genome.fa.s2.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  127  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42389449--42389961	54	9.6	52	80	8	523	41	20	17	20	1.90
42389449--42389948	215	2.3	215	85	2	648	41	20	17	20	1.90
42389449--42389945	242	2.1	242	87	1	728	42	20	17	20	1.90
42389449--42389947	81	6.2	80	81	9	536	41	20	17	20	1.90
42417669--42417734	30	2.2	30	88	0	96	15	28	33	22	1.94
42426226--42426271	23	2.0	23	100	0	92	47	17	13	21	1.81
42426230--42426282	23	2.3	23	86	3	70	49	18	11	20	1.78
42427710--42427760	23	2.2	23	85	3	66	41	17	21	19	1.91
42434199--42434535	167	2.0	167	86	0	467	29	17	24	28	1.97
42437936--42438036	48	2.1	49	98	1	195	28	11	15	43	1.83
42439581--42439676	3	30.7	3	91	6	147	63	1	4	31	1.20
42445384--42445419	14	2.6	14	91	4	56	27	8	0	63	1.23
42459417--42460056	44	13.7	43	67	20	227	31	19	22	26	1.98
42459407--42460112	142	5.0	142	95	0	1216	32	19	22	26	1.97
42459870--42460051	98	1.9	98	80	4	215	31	18	20	28	1.97
42459983--42460104	44	2.8	44	75	12	108	34	18	18	28	1.95
42463917--42464052	69	2.0	69	91	0	218	41	10	20	27	1.84
42465546--42465740	50	3.9	50	81	5	216	23	26	22	27	1.99
42468222--42468255	12	2.9	12	95	4	61	35	0	0	64	0.94
42471509--42471748	121	2.0	122	94	0	428	28	19	17	35	1.94
42472909--42472958	25	2.0	25	100	0	100	36	12	20	32	1.89
42477961--42478129	74	2.3	75	91	1	277	35	13	8	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42483498--42483753	136	1.9	136	80	4	302	30	25	21	21	1.99
42490287--42490376	46	2.0	46	90	0	144	23	6	11	58	1.55
42493074--42493106	16	2.1	16	88	5	50	48	0	6	45	1.27
42495544--42495619	27	2.8	27	92	4	118	30	27	22	19	1.98
42495544--42495636	27	3.5	27	86	5	111	31	25	22	20	1.98
42495600--42495701	25	4.1	25	76	7	91	34	20	23	21	1.97
42503014--42503080	25	2.7	25	81	2	73	32	20	25	20	1.97
42505814--42506075	136	1.9	136	99	0	515	39	16	11	32	1.85
42513111--42513161	21	2.4	21	90	0	75	19	15	31	33	1.93
42517632--42517693	28	2.2	28	85	5	81	45	9	14	30	1.77
42519624--42519677	24	2.3	23	78	12	56	11	16	3	68	1.33
42528031--42528075	20	2.2	20	84	0	54	33	13	26	26	1.93
42535445--42535860	27	15.4	28	79	7	375	42	20	20	17	1.90
42535445--42535860	54	7.7	54	81	3	419	42	20	20	17	1.90
42535449--42535860	81	5.1	81	81	6	421	42	20	19	16	1.89
42536212--42536265	28	1.9	28	88	0	81	22	20	24	33	1.97
42536202--42536296	33	3.0	33	74	13	92	22	21	24	32	1.98
42536459--42536487	6	5.0	6	95	4	51	31	0	0	68	0.89
42538990--42539067	30	2.7	29	77	13	81	35	6	20	37	1.78
42539405--42539641	56	4.9	49	76	18	226	25	22	29	22	1.99
42539405--42539641	50	4.8	50	75	18	228	25	22	29	22	1.99
42539466--42539641	89	1.9	92	87	7	261	26	23	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42541001--42541132	20	6.6	20	70	6	88	39	19	28	12	1.89
42541040--42541132	40	2.3	40	86	0	132	38	21	26	12	1.90
42548596--42548638	21	2.0	22	81	4	52	58	6	6	27	1.50
42549341--42549401	32	1.9	32	86	0	86	24	16	11	47	1.79
42555062--42555114	21	2.5	22	87	9	74	73	1	5	18	1.12
42555062--42555114	10	5.0	10	80	11	61	73	1	5	18	1.12
42555796--42556065	140	1.9	142	85	9	379	38	11	3	47	1.57
42556763--42557014	42	6.1	42	86	1	294	36	22	20	21	1.96
42564990--42565031	4	10.5	4	84	0	57	47	2	28	21	1.63
42569252--42569286	10	3.4	10	84	7	52	77	0	5	17	0.96
42571660--42571811	27	5.6	27	81	0	160	32	14	22	30	1.94
42579395--42579446	27	1.9	27	88	0	77	38	5	17	38	1.74
42579552--42579590	19	2.0	20	85	14	55	23	5	7	64	1.40
42582466--42582635	27	6.3	27	83	0	196	32	12	23	31	1.92
42583637--42583686	22	2.3	22	83	10	59	12	22	0	66	1.24
42585169--42585223	9	6.2	9	76	16	53	40	1	3	54	1.28
42619864--42620000	42	3.5	41	70	17	137	21	16	27	33	1.95
42619829--42620002	75	2.3	75	93	0	303	20	18	28	32	1.96
42619979--42620056	27	2.9	27	92	0	138	17	24	29	28	1.98
42626540--42627235	348	2.0	348	99	0	1367	40	7	22	28	1.82
42627448--42627621	75	2.3	75	92	0	294	20	17	27	33	1.96
42627523--42627720	102	1.9	102	89	0	306	20	19	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42627418--42627756	177	1.9	177	88	1	518	21	19	26	32	1.97
42630682--42630712	4	8.0	4	92	7	55	74	0	0	25	0.82
42637930--42638151	31	7.1	31	94	3	390	45	13	9	31	1.76
42637930--42638148	63	3.5	63	100	0	438	44	14	9	31	1.77
42639049--42639105	20	3.1	19	80	9	64	59	7	5	28	1.45
42648694--42648729	18	1.9	19	94	5	65	19	27	2	50	1.62
42654340--42654539	87	2.3	88	85	6	264	37	23	10	29	1.88
42654767--42654828	9	6.5	10	81	7	67	27	1	0	70	0.96
42654777--42654827	9	5.6	9	84	13	68	21	1	0	76	0.88
42654777--42654836	19	3.3	19	83	6	79	25	1	0	73	0.93
42654775--42654838	8	7.4	8	80	13	56	28	1	0	70	0.97
42654766--42654841	9	8.3	9	80	15	50	30	1	0	68	0.98
42659284--42659341	24	2.4	25	82	2	64	17	27	20	34	1.95
42666716--42666760	23	2.0	23	86	4	65	40	4	2	53	1.33
42666798--42666826	12	2.3	13	94	5	51	58	3	0	37	1.15
42666926--42666960	17	2.0	18	88	5	54	60	2	5	31	1.35
42667680--42667740	30	2.0	30	90	0	95	36	1	42	19	1.61
42667878--42667908	9	3.4	9	90	0	53	38	22	12	25	1.90
42668959--42668983	2	12.5	2	100	0	50	52	0	0	48	1.00
42669570--42670166	199	3.0	199	96	1	1079	38	16	15	29	1.89
42676386--42676431	9	5.1	9	83	0	56	21	36	0	41	1.54
42676386--42676431	18	2.6	18	89	0	74	21	36	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42676643--42676668	10	2.6	10	100	0	52	38	0	0	61	0.96
42681357--42681389	12	2.8	12	90	0	57	39	36	9	15	1.79
42681585--42681631	6	7.8	6	85	0	67	42	0	40	17	1.49
42681561--42681631	36	2.0	36	88	5	108	40	2	40	15	1.62
42682722--42682746	8	3.1	8	100	0	50	24	0	0	76	0.80
42682958--42683008	26	2.0	25	81	14	59	21	9	7	60	1.53
42690037--42690087	21	2.4	21	83	0	66	52	15	21	9	1.71
42692590--42692634	14	3.0	14	76	17	54	31	13	8	46	1.74
42695876--42695915	20	2.0	20	85	0	53	27	27	0	45	1.54
42697672--42697715	18	2.4	18	92	0	79	45	11	11	31	1.76
42706135--42706314	50	3.5	50	80	4	171	26	22	26	24	2.00
42706577--42706626	20	2.5	20	81	15	68	56	4	24	16	1.57
42711465--42711490	11	2.4	11	100	0	52	53	0	26	19	1.45
42711628--42711662	17	2.1	17	89	5	54	77	14	0	8	0.99
42714228--42714480	46	5.5	45	84	4	301	18	20	14	46	1.84
42714217--42714523	92	3.4	93	81	3	311	18	20	15	45	1.86
42714314--42714666	45	7.8	45	77	6	134	20	19	16	44	1.87
42716300--42716333	15	2.4	14	90	5	50	76	5	2	14	1.09
42718525--42718581	27	2.1	27	100	0	114	28	19	14	38	1.90
42730792--42730822	16	1.9	16	100	0	62	32	6	32	29	1.83
42733121--42733216	28	3.4	28	81	2	113	34	21	20	22	1.97
42733324--42733397	26	2.8	26	91	0	121	37	22	22	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42733586--42733645	27	2.2	27	84	0	75	21	15	23	40	1.91
42733599--42733844	27	9.2	26	83	6	253	16	19	22	41	1.90
42733599--42733844	54	4.6	54	84	3	293	16	19	22	41	1.90
42733599--42733844	81	3.0	80	85	7	329	16	19	22	41	1.90
42744494--42744588	45	2.1	45	94	0	163	31	23	18	26	1.98
42744597--42744771	51	3.5	50	77	3	190	32	28	16	22	1.96
42746055--42746092	19	2.0	20	94	5	69	36	10	34	18	1.85
42748200--42748238	18	2.2	18	86	9	53	23	15	0	61	1.33
42748218--42748297	12	6.4	12	77	8	61	11	17	1	70	1.23
42748224--42748296	6	11.7	6	71	18	51	8	17	1	72	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145