genome.fa.s2.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  20  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6360156--6360211	20	2.7	20	83	10	69	80	1	3	14	0.93
6360162--6360212	6	8.0	6	80	10	57	78	1	3	15	0.99
6367067--6367158	45	2.0	45	97	0	175	47	33	9	8	1.67
6373123--6373244	61	2.1	59	87	10	178	43	9	11	36	1.72
6373748--6373816	31	2.2	30	82	12	86	46	8	13	31	1.73
6374944--6375016	38	1.9	38	86	5	103	43	9	9	36	1.70
6377929--6377964	15	2.4	15	90	0	54	33	36	2	27	1.72
6377940--6378020	21	3.8	21	76	16	87	38	34	1	25	1.64
6377987--6378051	14	4.5	15	78	16	57	36	38	0	24	1.56
6378691--6379007	41	7.8	40	81	6	309	29	30	18	20	1.97
6379064--6379142	40	2.0	40	82	0	95	24	24	18	32	1.97
6386108--6386417	152	2.0	152	95	0	557	36	24	11	27	1.90
6395194--6395442	44	5.7	44	85	2	340	21	26	20	31	1.98
6395193--6395442	131	1.9	132	88	2	378	21	26	21	31	1.98
6395171--6395445	87	3.1	88	90	3	412	20	25	21	31	1.98
6398383--6398479	27	3.6	26	75	5	77	26	15	3	54	1.56
6398402--6398479	26	3.0	26	77	3	75	23	17	2	56	1.53
6398383--6398480	26	3.7	26	74	9	72	26	15	3	55	1.55
6407646--6407884	50	4.7	50	78	5	196	23	28	20	27	1.99
6422591--6422792	28	7.2	28	75	7	167	25	18	4	51	1.65
6422605--6422763	84	1.9	84	84	2	212	24	18	5	51	1.67
6427915--6427975	25	2.4	25	88	0	86	59	4	0	36	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6427910--6427989	25	3.2	24	75	8	79	57	5	1	36	1.28
6429835--6429982	28	5.4	28	73	11	108	25	15	4	54	1.60
6429835--6429899	27	2.4	27	87	7	87	27	16	4	50	1.65
6451463--6451496	17	1.9	18	94	5	61	26	5	14	52	1.64
6453920--6453981	20	3.1	19	73	17	63	45	20	24	9	1.81
6455171--6455230	29	2.1	29	100	0	120	26	16	10	46	1.78
6455197--6455291	50	1.9	50	95	0	172	23	14	9	52	1.71
6457267--6457311	20	2.3	19	85	11	56	33	6	13	46	1.69
6458160--6458244	38	2.2	38	79	8	93	47	18	7	27	1.75
6458680--6458729	20	2.4	21	83	6	57	42	2	2	54	1.23
6459755--6459869	51	2.3	51	96	0	212	27	30	0	41	1.56
6459871--6459935	31	2.1	32	94	5	116	35	0	0	64	0.94
6460964--6460988	7	3.6	7	100	0	50	28	0	12	60	1.32
6462118--6462151	18	1.9	18	94	5	52	52	23	0	23	1.47
6463435--6463478	13	3.5	13	84	6	54	52	9	2	36	1.46
6463435--6463484	25	2.0	26	84	11	68	54	8	4	34	1.49
6466734--6466773	21	1.9	21	89	0	62	37	5	0	57	1.21
6467039--6467157	55	2.2	55	89	0	184	46	10	10	33	1.71
6469876--6469942	32	2.1	31	86	8	91	56	0	5	37	1.24
6471423--6471476	27	2.0	27	92	0	90	27	1	20	50	1.59
6471635--6471720	35	2.5	35	83	3	104	40	3	10	45	1.55
6472234--6472340	17	6.2	17	77	4	79	26	8	17	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6475024--6475357	27	12.4	27	84	0	400	45	21	14	18	1.85
6475024--6475368	81	4.3	81	84	1	442	44	22	14	18	1.86
6477377--6477405	12	2.3	13	94	5	51	24	0	3	72	1.00
6479117--6479172	19	3.0	18	82	12	60	35	0	0	64	0.94
6479133--6479599	233	2.0	234	99	0	927	38	8	8	44	1.67
6486144--6486180	9	4.1	9	85	0	56	29	10	16	43	1.82
6498793--6499059	107	2.5	107	82	1	302	31	24	18	25	1.98
6500179--6500428	124	2.0	125	99	0	493	26	28	5	38	1.79
6510752--6510791	19	2.1	19	100	0	80	52	17	10	20	1.72
6512044--6512175	66	2.0	66	100	0	264	37	13	16	31	1.88
6524879--6524937	29	2.0	29	100	0	118	33	11	23	30	1.91
6528934--6528973	16	2.5	16	87	0	62	42	5	30	22	1.75
6528950--6529047	44	2.2	47	83	9	132	33	4	25	36	1.75
6529253--6529292	20	2.0	21	85	5	55	60	5	0	35	1.19
6529263--6529444	64	3.1	59	70	20	173	54	3	0	41	1.21
6529204--6529464	118	2.2	116	88	9	420	52	3	1	42	1.27
6529392--6529432	13	3.2	12	80	12	55	58	0	0	41	0.98
6529705--6529754	24	2.1	24	96	0	91	26	14	20	40	1.90
6530764--6530811	24	2.0	24	95	0	87	52	18	8	20	1.71
6534062--6534122	24	2.7	23	78	12	63	31	6	0	62	1.21
6536549--6536582	18	2.0	16	88	11	50	32	8	0	58	1.29
6538990--6539019	2	15.0	2	92	0	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6539252--6539293	19	2.2	20	82	4	50	30	7	11	50	1.66
6543013--6543058	24	1.9	24	86	0	65	45	15	26	13	1.82
6551060--6551215	84	1.8	85	81	9	194	28	18	24	28	1.98
6551141--6551613	45	10.8	45	66	16	194	29	18	24	28	1.98
6551141--6551642	89	5.7	88	71	13	392	29	18	23	28	1.98
6551141--6551730	174	3.3	174	89	3	817	28	19	22	28	1.98
6553094--6553155	12	5.4	11	83	12	72	16	3	1	79	0.95
6553094--6553155	23	2.7	23	83	14	74	16	3	1	79	0.95
6553085--6553162	8	9.8	8	69	14	54	15	3	1	79	0.94
6556250--6556281	16	1.9	17	93	6	57	53	0	6	40	1.26
6558410--6558435	13	2.0	13	100	0	52	46	0	7	46	1.31
6573849--6573883	14	2.5	14	95	0	61	28	14	0	57	1.38
6581494--6581702	92	2.3	91	85	5	269	45	3	4	46	1.41
6581630--6581677	26	1.9	25	84	16	64	45	0	2	52	1.12
6581821--6581855	18	2.0	17	88	5	52	45	0	0	54	0.99
6582091--6582142	16	3.2	16	100	0	104	38	36	0	25	1.56
6583549--6583594	19	2.3	20	78	14	51	43	2	15	39	1.59
6583929--6583961	15	2.2	15	89	10	50	27	0	3	69	1.03
6593959--6594037	11	7.2	11	78	8	63	25	24	3	46	1.69
6595187--6595211	7	3.6	7	100	0	50	28	0	12	60	1.32
6595862--6595897	18	2.0	18	94	0	63	25	27	8	38	1.84
6615413--6615476	27	2.4	27	100	0	128	67	0	3	29	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6622302--6622326	12	2.1	12	100	0	50	40	8	16	36	1.77
6628383--6628412	11	2.6	11	94	5	51	60	0	3	36	1.14
6631205--6631270	26	2.5	26	90	0	96	24	27	25	22	2.00
6640808--6640874	33	2.0	33	85	5	91	34	7	23	34	1.83
6646012--6646144	70	1.9	70	98	0	257	29	18	13	38	1.89
6646321--6646375	27	2.0	28	96	3	103	56	0	0	43	0.99
6648720--6649012	6	49.0	6	85	2	275	55	1	43	0	1.08
6648720--6649012	9	32.7	9	82	2	275	55	1	43	0	1.08
6648720--6649012	15	19.6	15	85	2	275	55	1	43	0	1.08
6654590--6654650	20	3.0	20	76	18	54	62	3	8	26	1.39
6658545--6658585	20	2.1	19	86	4	55	36	7	9	46	1.65
6661136--6661183	20	2.6	18	78	12	51	58	4	4	33	1.36
6661142--6661186	19	2.3	20	88	3	65	57	2	4	35	1.31
6661156--6661198	19	2.3	19	87	0	59	60	2	0	37	1.10
6661188--6661241	18	3.0	18	72	0	54	53	5	0	40	1.24
6666326--6666404	34	2.3	34	82	0	86	36	12	16	34	1.87
6667167--6667215	20	2.3	22	79	10	57	53	6	18	22	1.66
6669197--6669369	39	4.4	39	88	0	256	15	32	19	32	1.93
6669238--6669341	20	5.3	20	68	13	81	14	35	20	29	1.92
6669258--6669360	19	5.3	19	66	13	66	13	33	20	33	1.91
6680818--6680853	11	3.3	11	88	0	54	80	5	0	13	0.88
6693470--6693564	44	2.1	46	82	7	115	55	12	6	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6695003--6695045	18	2.4	18	88	0	59	41	44	2	11	1.53
6695155--6695239	9	9.4	9	80	5	91	24	8	22	44	1.80
6696805--6696847	22	2.0	21	81	4	50	18	16	27	37	1.92
6702942--6702972	4	7.8	4	100	0	62	51	22	0	25	1.48
6702962--6703054	33	2.8	34	85	9	122	55	6	5	32	1.48
6703046--6703094	20	2.4	21	89	3	73	67	6	0	26	1.14
6703041--6703094	21	2.6	20	85	5	72	64	5	0	29	1.16
6703185--6703228	20	2.1	21	83	4	54	68	4	2	25	1.20
6703949--6704003	28	2.0	28	85	7	76	56	9	10	23	1.62
6704597--6705137	44	12.5	43	72	13	240	28	23	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145