genome.fa.s2.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  143  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47599828--47599853	2	13.0	2	100	0	52	50	0	0	50	1.00
47601684--47601785	48	2.1	49	90	1	161	39	18	1	40	1.62
47604353--47604386	16	2.1	17	88	5	52	52	0	2	44	1.16
47604348--47604385	15	2.6	14	84	15	51	55	0	2	42	1.14
47606237--47606392	77	2.0	77	94	0	276	41	19	14	23	1.89
47623112--47623259	73	2.0	74	98	1	289	41	8	9	40	1.67
47624811--47625172	72	5.0	72	92	1	609	31	23	18	26	1.97
47633346--47633388	23	1.9	22	85	4	59	32	0	6	60	1.23
47633765--47633815	15	3.2	17	83	13	72	56	0	1	41	1.10
47635103--47635400	148	2.0	149	99	0	589	42	9	13	34	1.76
47635155--47635447	148	2.0	146	85	4	394	44	8	12	34	1.74
47638298--47638440	72	2.0	72	91	2	234	30	20	20	27	1.98
47644225--47644294	36	1.9	36	85	0	95	27	7	28	37	1.83
47644236--47644306	36	2.0	36	85	0	97	26	9	25	38	1.87
47645222--47645261	21	1.9	21	90	10	64	60	2	2	35	1.24
47645452--47645499	14	3.4	14	73	0	51	37	8	2	52	1.44
47647472--47647620	72	2.1	72	85	2	201	30	22	18	28	1.97
47653867--47653914	14	3.4	14	79	0	60	39	8	0	52	1.32
47662618--47662804	72	2.6	72	90	0	302	29	22	19	27	1.98
47662618--47662838	72	3.1	72	83	8	290	31	20	20	27	1.98
47665590--47665681	46	2.1	43	90	8	141	32	8	10	47	1.69
47666977--47667007	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47668375--47668404	5	6.0	5	100	0	60	20	20	20	40	1.92
47668978--47669055	30	2.6	30	84	6	97	41	28	21	8	1.83
47672053--47672084	16	2.0	16	100	0	64	62	0	6	31	1.20
47674812--47674854	21	2.0	22	81	4	52	32	0	4	62	1.15
47677461--47677499	6	6.7	6	82	5	53	12	2	2	82	0.89
47677461--47677499	17	2.2	18	86	4	53	12	2	2	82	0.89
47678348--47678384	17	2.1	18	90	5	58	43	5	5	45	1.49
47678932--47679142	106	2.0	104	88	3	316	31	16	17	34	1.92
47679709--47679748	19	2.1	19	100	0	80	20	10	10	60	1.57
47683392--47684536	89	12.9	89	89	0	1574	28	25	22	22	1.99
47684655--47685225	132	4.4	132	88	5	862	28	18	24	29	1.98
47684635--47685000	44	8.3	44	69	17	224	30	16	24	28	1.96
47684961--47685199	119	2.0	119	93	0	406	27	18	25	28	1.98
47685207--47685243	18	2.1	18	100	0	74	10	32	16	40	1.83
47685942--47685974	17	1.9	17	93	0	57	9	0	6	84	0.76
47686312--47686336	5	5.0	5	100	0	50	20	60	20	0	1.37
47687254--47687304	23	2.2	23	78	0	57	31	13	1	52	1.51
47689270--47689315	24	1.9	24	82	8	58	43	21	0	34	1.53
47691372--47691409	18	2.2	17	90	4	58	26	2	5	65	1.27
47693169--47693199	8	3.9	8	91	0	53	83	0	0	16	0.64
47695466--47695675	109	1.9	110	85	0	287	31	12	17	38	1.88
47699593--47699627	17	2.0	18	94	5	63	37	5	0	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47699734--47699772	19	2.1	18	85	4	51	48	2	2	46	1.29
47715605--47715679	31	2.4	29	82	14	87	50	8	4	37	1.50
47717050--47717981	89	10.4	89	88	2	1183	26	24	18	30	1.98
47717050--47717981	181	5.2	178	88	2	1226	26	24	18	30	1.98
47717050--47717981	270	3.5	267	87	3	1203	26	24	18	30	1.98
47717966--47717995	14	2.1	14	100	0	60	43	6	36	13	1.70
47717928--47718040	59	1.9	59	92	0	190	28	22	23	25	1.99
47717839--47718132	148	2.0	150	91	2	484	26	23	21	28	1.99
47717750--47718221	240	2.0	237	93	1	809	25	23	21	29	1.99
47717987--47718321	89	3.7	89	95	3	591	25	25	20	28	1.99
47717987--47718322	45	7.5	43	73	8	240	25	25	20	28	1.99
47722959--47722989	16	1.9	16	93	0	53	32	22	19	25	1.97
47724832--47724858	10	2.7	10	100	0	54	70	0	0	29	0.88
47725365--47725414	25	2.0	24	84	3	64	78	2	12	8	1.05
47728450--47728480	3	10.3	3	100	0	62	32	0	0	67	0.91
47730617--47730655	21	1.9	20	84	5	51	48	5	5	41	1.47
47733006--47733035	9	3.2	9	95	4	51	73	0	0	26	0.84
47746483--47746553	29	2.4	29	93	4	117	76	2	5	15	1.10
47746516--47746553	20	1.9	20	88	0	58	76	2	2	18	1.02
47746979--47747022	20	2.2	20	100	0	88	56	0	20	22	1.42
47748532--47748568	18	2.1	18	90	5	58	70	0	0	29	0.88
47754738--47754893	40	3.5	42	77	18	145	60	0	3	35	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47754798--47754848	24	2.3	22	86	10	68	64	0	1	33	1.05
47754750--47754883	51	2.6	51	89	3	189	61	0	2	35	1.11
47754762--47754866	10	10.4	10	66	24	60	64	0	1	33	1.04
47759898--47759998	50	2.0	50	94	0	175	37	10	18	32	1.86
47761414--47761457	20	2.2	20	100	0	88	22	4	4	68	1.27
47764391--47764416	13	2.0	13	100	0	52	30	23	23	23	1.99
47781815--47781884	36	1.9	36	88	8	106	38	1	2	57	1.23
47781821--47781885	9	7.1	9	75	18	55	41	1	3	53	1.25
47784109--47784137	14	2.1	14	100	0	58	31	0	6	62	1.22
47784967--47785014	20	2.3	20	78	3	51	37	2	0	60	1.09
47787913--47788044	65	2.0	66	98	1	257	13	25	22	37	1.91
47788374--47788412	20	2.0	20	94	0	69	25	23	17	33	1.96
47797952--47797993	2	21.0	2	100	0	84	50	0	0	50	1.00
47802547--47802579	16	2.0	17	88	5	50	6	27	3	63	1.32
47802675--47802708	14	2.5	14	95	4	61	50	35	0	14	1.44
47806954--47807033	31	2.7	30	78	16	78	45	10	8	36	1.69
47813860--47813912	24	2.3	24	80	6	65	26	9	7	56	1.57
47815916--47815953	19	2.0	19	85	10	51	34	5	2	57	1.35
47816497--47816705	105	2.0	105	87	0	301	31	21	10	36	1.87
47818846--47819021	87	2.0	88	98	1	345	40	13	5	40	1.67
47821576--47821624	27	1.9	26	84	12	66	22	10	8	59	1.56
47823247--47823280	11	2.8	12	91	8	52	20	0	5	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47827720--47827754	7	5.0	7	96	0	61	82	2	0	14	0.77
47830720--47830757	15	2.5	15	87	12	51	28	2	2	65	1.19
47831759--47832248	94	5.3	92	73	8	429	39	7	19	34	1.80
47838938--47838994	30	2.1	26	81	15	62	49	7	1	42	1.40
47861807--47861847	18	2.3	18	83	8	57	19	4	0	75	0.98
47862940--47863116	88	2.0	89	98	1	347	50	8	5	35	1.56
47864238--47864308	31	2.3	31	87	0	106	45	8	11	35	1.70
47864324--47864348	10	2.5	10	100	0	50	0	8	0	92	0.40
47867682--47867723	22	1.9	22	85	9	59	59	0	2	38	1.10
47871716--47871765	15	3.3	15	88	0	73	20	38	0	42	1.52
47874728--47874803	31	2.4	32	86	6	86	53	9	14	22	1.68
47874739--47874803	31	2.1	31	94	0	112	52	10	15	21	1.73
47878150--47878203	24	2.2	24	93	0	90	46	5	25	22	1.73
47885669--47885694	5	5.2	5	100	0	52	42	19	19	19	1.90
47886741--47886777	9	4.1	9	92	0	65	29	10	13	45	1.77
47891873--47891935	27	2.3	27	81	10	67	33	9	0	57	1.31
47893530--47893591	31	2.0	31	84	6	81	56	6	3	33	1.41
47898098--47898274	60	3.0	60	100	0	354	27	11	24	35	1.91
47898136--47898237	31	3.4	31	71	5	109	26	10	27	35	1.90
47898107--47898266	29	5.4	29	69	5	131	28	11	24	35	1.91
47899402--47899532	60	2.2	58	80	13	133	33	15	9	41	1.80
47900707--47900752	9	5.1	9	94	0	74	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47901590--47901622	17	1.9	17	88	11	50	81	3	12	3	0.91
47907264--47907304	15	2.7	15	92	0	64	43	0	39	17	1.49
47910597--47910631	18	1.9	18	88	0	52	37	5	25	31	1.80
47919092--47919130	12	3.2	12	92	0	60	41	25	0	33	1.56
47919092--47919130	18	2.2	18	90	0	60	41	25	0	33	1.56
47920003--47920029	10	2.7	10	100	0	54	40	0	11	48	1.39
47920306--47920349	2	23.0	2	90	9	74	47	0	0	52	1.00
47922918--47922942	2	12.5	2	100	0	50	48	0	0	52	1.00
47935574--47935637	31	2.1	31	88	5	94	31	17	9	42	1.81
47952395--47952493	43	2.3	43	92	3	173	48	9	30	12	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145