genome.fa.s2.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  141  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46818640--46818699	30	2.0	30	96	0	111	31	13	25	30	1.93
46820770--46820849	40	2.1	39	88	4	117	47	15	1	36	1.53
46820917--46820969	14	3.9	13	78	7	52	26	1	22	49	1.60
46821148--46821196	22	2.2	23	82	10	57	55	6	0	38	1.25
46824135--46824444	9	35.7	9	67	18	63	61	0	5	32	1.23
46824161--46824415	60	4.2	60	100	0	510	60	0	5	34	1.19
46824378--46824424	22	2.1	23	84	4	60	65	2	8	23	1.31
46824892--46825444	186	3.0	186	92	2	915	45	13	14	26	1.83
46826190--46827617	333	4.3	335	82	4	1674	26	15	24	33	1.95
46831875--46831911	2	18.5	2	94	0	56	51	5	0	43	1.24
46837304--46837354	24	2.2	23	82	10	59	64	5	1	27	1.27
46837526--46837562	19	1.9	19	88	0	56	75	5	2	16	1.10
46841994--46842116	47	2.6	47	87	5	185	42	19	18	19	1.90
46852173--46852212	20	2.0	20	90	0	62	12	2	42	42	1.56
46855995--46856118	23	5.2	22	70	19	63	51	2	0	45	1.20
46856058--46856116	18	3.0	20	80	9	68	52	1	0	45	1.10
46857020--46857054	17	2.1	17	100	0	70	68	5	0	25	1.11
46858012--46858102	38	2.4	38	92	0	146	32	19	20	26	1.97
46866965--46867027	27	2.2	29	77	5	67	11	9	28	50	1.69
46867880--46867921	21	2.0	21	85	0	57	11	33	4	50	1.60
46868446--46868496	17	3.1	16	77	8	50	35	0	1	62	1.06
46883728--46883779	23	2.3	23	100	0	104	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46889868--46889902	17	2.1	17	94	0	61	20	45	17	17	1.85
46897876--46897982	53	2.0	53	100	0	214	36	16	16	29	1.92
46904547--46904586	5	8.0	5	100	0	80	40	0	0	60	0.97
46905389--46905584	97	2.0	98	98	1	385	45	10	4	39	1.57
46912420--46912458	4	9.2	4	94	5	60	76	0	0	23	0.78
46913487--46913519	16	2.0	17	88	5	50	63	0	0	36	0.95
46927378--46927437	22	2.8	21	77	5	66	35	18	25	21	1.96
46928099--46928318	114	1.9	114	95	0	395	32	20	14	32	1.93
46928668--46928721	25	2.2	25	100	0	108	35	3	7	53	1.47
46930092--46930132	15	2.7	16	75	24	52	53	2	2	41	1.27
46930116--46930182	23	3.0	22	72	12	73	49	2	2	44	1.32
46939654--46939710	16	3.4	16	77	20	62	63	5	8	22	1.44
46939654--46939710	18	3.4	17	79	15	64	63	5	8	22	1.44
46941643--46941684	21	2.0	21	100	0	84	14	19	14	52	1.75
46941788--46941857	34	2.1	33	89	7	106	27	5	11	55	1.57
46965977--46966044	29	2.3	30	87	2	102	45	7	14	32	1.73
46975517--46975597	38	2.1	38	93	0	135	32	20	6	40	1.77
46977567--46977611	19	2.4	19	89	10	67	62	0	0	37	0.96
46977567--46977611	18	2.4	18	89	10	65	62	0	0	37	0.96
46978007--46978031	7	3.6	7	100	0	50	0	12	0	88	0.53
46983197--46983261	31	2.1	30	83	8	78	46	6	1	46	1.37
46990499--46990572	37	2.0	37	94	0	130	31	17	27	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46991057--46991117	30	2.0	30	100	0	122	24	16	22	36	1.94
46991950--46991983	17	2.0	17	100	0	68	47	5	11	35	1.65
47016819--47016844	7	3.7	7	100	0	52	11	0	0	88	0.52
47016805--47016867	33	1.9	33	83	0	81	26	1	4	66	1.20
47026262--47026498	115	2.0	116	98	1	458	39	7	9	43	1.65
47026366--47026414	23	2.2	21	82	7	53	53	2	4	40	1.32
47034697--47034775	26	3.2	26	64	20	69	37	10	7	44	1.67
47034687--47034787	48	2.2	44	78	14	121	41	9	6	41	1.65
47041943--47041975	17	1.9	17	88	11	50	54	0	0	45	0.99
47041945--47042020	27	2.8	26	76	11	82	56	0	2	40	1.13
47043398--47043447	24	2.1	24	88	0	73	50	2	10	38	1.48
47046449--47046493	3	15.0	3	85	0	63	62	2	0	35	1.08
47054107--47054144	13	2.7	14	88	8	51	34	0	0	65	0.93
47054107--47054135	15	2.0	15	93	6	51	31	0	0	68	0.89
47054181--47054211	14	2.2	14	94	0	53	77	3	0	19	0.90
47054354--47054391	13	2.7	14	88	8	51	34	0	0	65	0.93
47054354--47054382	15	2.0	15	93	6	51	31	0	0	68	0.89
47054428--47054458	14	2.2	14	94	0	53	77	3	0	19	0.90
47054061--47054555	247	2.0	248	99	0	983	41	9	11	37	1.74
47059108--47059153	21	2.2	22	92	7	78	23	10	8	56	1.61
47070017--47070047	4	7.8	4	100	0	62	0	22	0	77	0.77
47075341--47075939	301	2.0	302	98	0	1164	42	19	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47078825--47078850	5	5.2	5	100	0	52	19	0	0	80	0.71
47079480--47079526	15	3.1	14	87	6	58	17	2	2	78	0.94
47081637--47081944	151	2.0	151	98	0	589	32	9	12	46	1.73
47084182--47084221	17	2.4	17	82	0	53	40	0	2	57	1.12
47094245--47094284	17	2.4	17	82	0	53	40	0	2	57	1.12
47097082--47097142	29	2.2	28	82	5	70	22	9	18	49	1.77
47098035--47098090	29	1.9	29	89	7	87	41	19	16	23	1.90
47098208--47098265	26	2.2	28	81	9	68	22	1	10	65	1.32
47098625--47098766	56	2.5	56	84	6	171	54	9	11	25	1.65
47098683--47098767	25	3.2	25	66	16	62	56	7	10	25	1.58
47099116--47099144	15	1.9	15	100	0	58	41	10	13	34	1.79
47111715--47111740	3	8.7	3	100	0	52	65	0	34	0	0.93
47114529--47114631	9	11.4	9	86	4	145	40	23	11	24	1.87
47114529--47114631	27	3.8	27	94	0	170	40	23	11	24	1.87
47123185--47123218	17	2.0	17	100	0	68	29	5	5	58	1.45
47128846--47128875	16	1.9	15	93	6	51	46	0	0	53	1.00
47130902--47130951	18	2.9	17	77	13	50	60	6	0	34	1.21
47130915--47130951	15	2.2	18	86	13	53	64	8	0	27	1.21
47133088--47133201	58	1.9	59	85	8	158	54	9	13	22	1.67
47133116--47133201	28	2.9	29	76	15	95	54	9	11	24	1.65
47135231--47135265	17	2.1	17	88	0	52	40	0	0	60	0.97
47136066--47136113	13	3.6	14	81	13	57	14	4	0	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47139129--47139236	54	2.0	54	100	0	216	42	9	0	48	1.35
47140230--47140305	20	3.8	20	75	13	50	15	7	2	73	1.17
47140231--47140302	19	3.8	20	76	7	60	15	8	2	73	1.18
47140301--47140334	9	3.8	9	85	14	52	17	0	2	79	0.86
47147309--47147385	38	2.0	38	94	0	136	33	12	11	41	1.80
47150793--47150818	13	2.0	13	100	0	52	61	7	7	23	1.49
47152630--47152659	16	1.9	15	93	6	51	46	0	0	53	1.00
47157137--47157201	12	5.4	12	94	0	112	0	30	1	67	1.00
47163801--47163844	21	2.1	21	87	8	63	36	11	15	36	1.84
47169452--47169490	17	2.2	17	86	4	51	15	7	7	69	1.35
47175566--47175606	14	2.9	14	81	0	55	36	0	17	46	1.48
47181051--47181184	10	14.4	9	69	19	55	63	1	4	30	1.23
47181051--47181145	29	3.3	29	72	16	81	62	2	4	31	1.26
47181051--47181162	10	11.5	10	71	10	63	63	1	5	29	1.27
47181406--47181493	37	2.4	36	80	14	108	31	3	1	63	1.18
47181448--47181521	27	2.6	28	81	14	89	37	2	0	59	1.12
47181428--47181506	37	2.1	38	81	11	92	40	3	0	55	1.18
47181414--47181532	19	6.4	19	72	7	75	33	3	1	61	1.22
47181406--47181543	9	15.2	9	70	15	79	32	2	1	63	1.18
47181635--47181946	101	3.3	100	73	11	303	37	9	16	36	1.81
47181639--47182031	188	2.1	182	85	6	511	37	10	15	37	1.81
47182463--47182500	19	2.1	19	90	5	60	55	2	0	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47182492--47182534	13	3.5	12	79	14	52	67	2	4	25	1.22
47185029--47185060	2	16.5	2	93	6	57	50	0	0	50	1.00
47190621--47190655	18	1.9	18	88	0	52	28	5	11	54	1.59
47190908--47190948	18	2.3	18	87	8	57	56	0	0	43	0.99
47197175--47197203	7	4.1	7	100	0	58	27	0	0	72	0.85
47198705--47198735	14	2.2	14	94	0	53	35	6	16	41	1.74
47202293--47202323	16	2.0	16	93	6	55	61	0	0	38	0.96
47207278--47207316	6	6.5	6	90	0	60	38	15	0	46	1.46
47207819--47207849	4	7.8	4	92	0	53	25	45	0	29	1.54
47221739--47221769	13	2.4	13	94	0	53	54	12	0	32	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145