genome.fa.s2.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  144  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47952542--47952693	76	2.0	76	98	0	295	42	19	13	25	1.87
47963849--47963881	16	2.0	17	88	5	50	63	0	0	36	0.95
47964767--47964799	16	2.0	17	88	5	50	63	0	0	36	0.95
47965978--47966053	30	2.5	30	85	6	100	22	17	22	38	1.93
47970575--47970600	12	2.2	12	100	0	52	34	23	15	26	1.94
47970601--47970631	2	15.5	2	100	0	62	51	0	0	48	1.00
47970906--47970943	20	2.0	20	89	5	60	26	0	2	71	1.00
47973882--47973934	13	4.1	13	78	9	63	37	22	7	32	1.82
47974073--47974103	10	3.2	10	90	9	55	19	0	0	80	0.71
47974073--47974108	9	4.0	9	92	7	56	19	0	0	80	0.71
47975208--47975265	30	1.9	31	85	3	82	41	10	8	39	1.70
47975208--47975273	30	2.2	31	83	2	80	40	10	9	39	1.71
47975581--47975645	31	2.1	31	82	5	78	43	7	9	40	1.65
47980899--47980931	7	4.7	7	100	0	66	87	0	0	12	0.53
47983239--47983272	18	1.9	18	88	5	52	29	0	5	64	1.17
47985005--47985131	40	3.2	39	72	11	116	33	24	17	25	1.96
47986435--47986468	9	3.7	9	88	7	50	32	0	0	67	0.91
47986427--47986469	19	2.4	17	88	7	59	30	0	0	69	0.88
47990244--47990277	14	2.3	15	95	5	61	2	0	14	82	0.79
48000532--48000616	27	3.2	27	91	1	127	17	27	30	24	1.97
48000654--48000722	27	2.6	27	83	0	93	49	0	11	39	1.39
48003985--48004097	60	1.9	60	88	0	172	30	15	15	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48007506--48007543	18	2.0	20	90	10	62	63	5	0	31	1.17
48007503--48007538	6	6.0	6	90	0	54	63	2	0	33	1.08
48010281--48010315	14	2.5	14	86	13	54	77	0	8	14	0.99
48011995--48012028	16	2.1	17	88	5	52	29	17	11	41	1.85
48013227--48013280	17	3.1	17	84	10	72	37	0	0	62	0.95
48013235--48013278	19	2.3	19	100	0	88	34	0	0	65	0.93
48013245--48013321	30	2.6	29	85	6	100	35	1	0	63	1.03
48014928--48014959	15	2.1	15	100	0	64	18	37	6	37	1.76
48021907--48022520	313	2.0	312	88	4	925	48	14	9	27	1.74
48023433--48023457	2	12.5	2	100	0	50	52	0	0	48	1.00
48038616--48038664	24	2.0	24	96	0	89	22	10	12	55	1.66
48039264--48039288	12	2.1	12	100	0	50	48	0	0	52	1.00
48039304--48039362	29	2.0	30	83	3	75	52	13	1	32	1.50
48047229--48047474	94	2.8	81	75	19	201	39	19	12	29	1.87
48047295--48047777	88	5.1	93	79	11	448	42	17	11	28	1.84
48047348--48047687	95	3.7	82	69	21	148	42	18	10	28	1.83
48050924--48050983	31	2.0	30	86	3	84	55	1	3	40	1.27
48051793--48052123	183	1.8	183	87	1	502	25	7	23	43	1.79
48051961--48052124	84	2.0	84	85	0	220	26	7	21	44	1.78
48057510--48057567	29	2.0	29	86	0	80	37	10	15	36	1.82
48062122--48062153	15	2.2	15	94	5	57	56	21	0	21	1.43
48063935--48063959	13	1.9	13	100	0	50	48	4	0	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48064707--48064735	2	14.5	2	100	0	58	51	0	0	48	1.00
48065202--48065262	30	2.0	30	100	0	122	50	13	3	32	1.57
48066716--48066754	20	1.9	20	84	5	51	30	7	15	46	1.74
48067007--48067648	192	3.5	185	89	6	996	29	9	13	47	1.74
48067548--48067770	121	1.8	122	97	0	421	33	9	15	40	1.81
48067356--48067955	306	1.9	310	91	5	982	30	9	14	45	1.77
48067669--48068075	181	2.2	180	91	4	647	28	9	14	47	1.74
48072551--48072583	15	2.1	16	88	5	50	72	0	0	27	0.85
48074227--48074331	41	2.5	41	93	3	174	20	10	12	57	1.64
48078350--48078498	54	2.8	55	79	10	157	32	20	18	27	1.96
48082584--48082630	3	15.7	3	100	0	94	65	0	0	34	0.93
48084536--48084590	26	2.0	28	89	6	87	14	10	12	61	1.56
48086436--48087586	174	6.6	174	97	0	2059	29	14	19	36	1.91
48097653--48097693	21	2.0	21	85	4	57	56	9	0	34	1.32
48097946--48097987	17	2.4	17	84	11	50	35	2	4	57	1.33
48097918--48097998	26	3.0	29	71	14	73	39	1	2	56	1.20
48106222--48106259	19	2.1	19	90	5	60	57	0	0	42	0.98
48106222--48106299	19	4.2	19	73	18	58	56	0	1	42	1.07
48106223--48106288	27	2.4	28	87	5	100	54	0	0	45	0.99
48110841--48111393	81	6.9	79	81	7	596	42	9	17	30	1.81
48114859--48114899	2	20.5	2	94	0	73	51	0	0	48	1.00
48117490--48117588	31	3.2	30	76	11	101	37	13	5	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48122004--48122141	68	2.0	68	100	0	276	31	10	23	34	1.88
48122865--48122938	37	2.0	37	89	0	112	43	12	9	35	1.74
48123521--48123560	16	2.5	16	95	0	71	37	40	20	2	1.66
48123712--48123768	24	2.5	23	86	8	80	5	10	29	54	1.56
48123725--48123773	24	2.0	24	100	0	98	4	14	28	53	1.59
48127782--48127821	21	1.9	21	100	0	80	35	7	12	45	1.70
48127810--48127843	2	17.0	2	100	0	68	50	0	0	50	1.00
48128899--48128975	37	2.1	38	87	2	111	35	7	28	28	1.85
48133398--48133455	11	5.4	11	78	15	59	37	5	0	56	1.21
48133420--48133504	10	8.4	10	74	17	59	30	1	0	68	0.97
48133409--48133517	30	3.6	30	88	7	148	33	1	0	64	1.05
48149531--48149556	11	2.4	11	100	0	52	38	0	0	61	0.96
48149539--48149576	18	2.1	18	90	5	58	36	0	0	63	0.95
48149744--48149770	12	2.2	12	100	0	54	40	25	7	25	1.82
48155299--48155345	24	2.0	24	100	0	94	8	21	17	53	1.70
48160982--48161026	22	2.0	22	91	8	74	40	0	0	60	0.97
48164272--48164300	6	4.8	6	100	0	58	0	31	34	34	1.58
48165239--48165277	2	19.5	2	100	0	78	51	0	0	48	1.00
48170980--48171012	15	2.2	15	94	0	57	42	15	0	42	1.46
48172031--48172059	2	14.5	2	100	0	58	48	0	0	51	1.00
48173708--48173775	31	2.2	31	91	0	109	32	14	11	41	1.82
48177046--48177086	4	10.2	4	94	0	73	26	2	24	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48180486--48180535	19	2.6	19	81	6	57	64	2	0	34	1.05
48180764--48180804	21	2.0	21	85	0	55	36	0	2	60	1.10
48181409--48181577	87	1.9	87	98	0	329	23	30	18	28	1.97
48182995--48183059	34	1.9	34	87	6	96	41	0	12	46	1.41
48183143--48183771	126	5.0	126	91	0	1010	37	17	18	27	1.93
48186744--48186800	24	2.3	24	77	11	62	54	5	1	38	1.33
48188836--48188875	11	3.6	11	86	6	55	52	0	25	22	1.47
48192669--48192728	27	2.2	26	82	8	75	31	20	31	16	1.95
48192678--48192734	27	2.1	27	93	0	96	33	22	28	15	1.95
48193280--48193314	17	2.0	17	88	5	52	48	0	17	34	1.47
48193653--48193709	27	2.1	27	93	0	96	14	28	26	31	1.94
48193653--48193718	27	2.4	27	87	5	80	15	30	25	28	1.96
48193776--48193837	28	2.2	28	85	2	81	50	1	9	38	1.45
48213231--48213310	40	2.0	40	100	0	160	25	10	37	27	1.88
48218062--48218139	39	2.0	39	100	0	156	46	7	28	17	1.76
48223651--48223708	30	1.9	31	86	10	84	24	3	17	55	1.57
48223803--48223859	29	2.0	29	89	0	87	40	12	7	40	1.70
48224033--48224108	38	2.0	38	92	0	125	52	6	10	30	1.61
48226406--48226614	100	2.1	100	97	1	395	56	9	5	28	1.54
48229577--48229639	23	2.8	23	82	2	83	50	1	1	46	1.20
48229615--48229654	16	2.5	16	91	0	62	47	2	7	42	1.45
48232907--48233057	76	2.0	76	97	0	284	16	5	52	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48233470--48233517	24	2.0	24	88	8	71	20	2	62	14	1.42
48233627--48233655	6	4.8	6	100	0	58	31	0	51	17	1.45
48234145--48234175	2	15.5	2	100	0	62	51	0	0	48	1.00
48250378--48250606	114	2.0	115	99	0	451	41	9	16	31	1.81
48266949--48267019	20	3.5	20	73	21	65	33	0	8	57	1.29
48266949--48266998	20	2.5	20	87	12	68	36	0	8	56	1.29
48270592--48270650	26	2.3	26	93	0	109	30	18	15	35	1.92
48281171--48281231	31	2.0	31	90	0	95	49	8	13	29	1.70
48281567--48281627	31	2.0	31	90	0	95	49	8	13	29	1.70
48281112--48281909	396	2.0	397	99	0	1589	38	15	13	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145