genome.fa.s2.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  32  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10302744--10302778	17	2.1	16	89	5	52	51	14	14	20	1.76
10304977--10305007	6	5.2	6	100	0	62	83	16	0	0	0.64
10319887--10320088	28	7.2	28	91	2	318	29	25	23	22	1.99
10320116--10320246	58	2.3	58	94	0	226	35	40	12	11	1.79
10320248--10320312	26	2.5	26	78	9	71	35	24	21	18	1.96
10320551--10320622	27	2.7	26	79	12	92	22	15	18	44	1.86
10325785--10325837	21	2.5	21	73	14	54	30	20	30	18	1.97
10327343--10327405	20	3.1	20	86	2	81	46	22	22	9	1.80
10327398--10327458	22	2.8	22	89	0	95	49	19	16	14	1.80
10335389--10335428	18	2.2	18	86	8	55	45	0	0	55	0.99
10337408--10337440	3	11.0	3	100	0	66	33	33	0	33	1.58
10340396--10340464	6	11.5	6	100	0	138	50	15	0	33	1.45
10348032--10348276	40	6.1	40	86	0	328	34	17	28	18	1.94
10349682--10349732	13	3.9	13	77	10	59	33	5	23	37	1.79
10354842--10354871	12	2.5	12	94	0	51	20	43	30	6	1.77
10360278--10360320	15	2.9	14	80	13	50	18	2	9	69	1.26
10368791--10368829	20	2.0	20	89	0	60	7	28	17	46	1.76
10371779--10372111	139	2.4	137	83	6	409	27	19	17	34	1.95
10373186--10373227	7	6.1	7	80	5	50	14	50	0	35	1.43
10374467--10374582	13	8.8	13	81	4	126	34	5	6	53	1.50
10374472--10374584	27	4.3	27	78	4	115	35	5	7	52	1.52
10374472--10374584	53	2.2	52	90	1	172	35	5	7	52	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10374472--10374580	40	2.8	40	80	5	62	35	4	7	52	1.50
10375855--10376011	43	3.7	41	78	8	156	24	18	28	29	1.98
10376172--10376203	16	1.9	17	93	6	57	40	0	21	37	1.54
10383328--10383484	43	3.7	41	78	11	176	22	17	29	29	1.97
10383329--10383484	84	1.9	84	84	10	212	23	17	29	30	1.97
10385963--10386001	13	3.0	13	85	7	53	38	7	7	46	1.61
10386018--10386084	35	1.9	35	90	0	107	38	4	8	47	1.55
10387312--10387359	21	2.3	21	78	7	53	58	16	0	25	1.38
10390579--10390653	26	2.9	26	93	0	123	37	21	24	17	1.94
10390817--10391105	27	10.7	27	82	5	307	19	20	19	40	1.91
10392032--10392129	44	2.3	42	82	8	117	32	25	17	24	1.97
10406409--10406517	45	2.4	45	92	0	191	32	18	11	38	1.86
10406471--10406546	34	2.3	34	93	2	127	34	17	7	40	1.78
10408978--10409036	26	2.2	28	85	8	79	57	8	3	30	1.45
10408987--10409036	12	3.9	12	79	20	57	58	10	2	30	1.42
10409423--10409532	32	3.1	35	82	8	109	30	26	4	39	1.76
10409474--10409537	32	2.0	32	96	0	119	35	31	1	31	1.67
10409945--10409986	19	2.2	19	83	8	50	7	11	7	73	1.23
10418473--10418517	22	2.0	22	100	0	90	13	22	17	46	1.83
10424826--10424882	17	3.5	17	69	13	57	24	3	24	47	1.68
10424821--10424885	31	2.1	31	100	0	130	21	3	27	47	1.65
10431804--10431836	15	2.2	15	94	0	57	51	0	6	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10431796--10431837	21	2.0	21	81	9	50	52	0	4	42	1.22
10432616--10432664	25	2.0	25	87	0	71	42	0	12	44	1.41
10433061--10433145	43	2.0	43	88	4	127	50	1	24	23	1.56
10462972--10463169	67	2.9	68	80	6	233	20	15	30	33	1.94
10463133--10463309	69	2.6	69	83	1	212	23	13	28	33	1.93
10477594--10477729	50	2.7	50	83	0	173	20	29	22	27	1.99
10480083--10480123	21	1.9	22	85	5	57	43	17	14	24	1.86
10486227--10486313	33	2.7	33	83	1	113	18	36	4	40	1.71
10495993--10496051	21	2.8	21	78	14	68	32	13	18	35	1.90
10497927--10498067	39	3.6	39	87	0	183	31	4	19	43	1.73
10501033--10501077	21	2.1	21	83	0	54	53	2	4	40	1.33
10502625--10502659	17	2.1	17	89	10	54	28	28	5	37	1.80
10505442--10505474	15	2.1	17	88	11	52	24	0	3	72	0.98
10507674--10507741	34	2.0	34	100	0	136	50	23	0	26	1.50
10507681--10507739	17	3.5	16	69	26	50	50	23	0	25	1.49
10508462--10508487	13	2.0	13	100	0	52	53	0	0	46	1.00
10519863--10519905	19	2.2	20	83	8	52	32	20	16	30	1.95
10522043--10522113	24	2.9	24	74	17	74	15	25	23	35	1.94
10522050--10522113	25	2.6	24	80	2	83	15	26	21	35	1.94
10522755--10522792	18	2.1	18	85	9	51	21	2	21	55	1.56
10533412--10533544	57	2.3	57	89	0	194	27	9	15	47	1.76
10538647--10538701	21	2.6	21	88	0	83	12	25	34	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10541331--10541441	13	8.2	14	68	20	60	53	1	13	31	1.50
10541391--10541450	27	2.2	27	96	0	111	48	0	15	36	1.45
10541406--10541481	40	1.9	39	82	12	93	43	1	18	36	1.59
10548380--10548414	6	5.8	6	100	0	70	34	0	65	0	0.93
10549588--10549639	24	2.2	24	82	0	59	34	5	9	50	1.59
10550338--10550394	29	1.9	30	85	3	80	52	3	3	40	1.35
10550850--10550878	3	9.7	3	100	0	58	0	31	0	68	0.89
10556097--10556133	18	2.0	19	85	15	51	32	18	5	43	1.73
10561856--10561957	19	5.3	19	92	4	177	36	15	10	37	1.83
10561847--10561957	40	2.9	40	93	5	185	36	14	10	37	1.81
10572753--10572805	25	2.2	25	80	6	74	62	5	1	30	1.29
10573351--10573463	19	5.8	19	89	4	181	36	15	10	38	1.82
10573328--10573463	38	3.4	38	87	8	173	38	14	9	37	1.79
10573351--10573462	59	1.9	59	94	0	197	36	14	10	38	1.81
10581812--10581958	55	2.7	54	86	2	195	35	17	22	25	1.95
10581797--10581964	82	2.1	81	86	3	230	34	19	20	25	1.96
10581797--10581971	27	6.4	27	83	3	181	33	20	21	25	1.97
10581978--10582042	24	2.7	24	83	11	71	26	10	20	43	1.84
10582778--10582810	14	2.3	15	84	10	50	30	6	15	48	1.69
10584982--10585035	23	2.4	22	81	9	63	31	22	14	31	1.94
10585098--10585176	23	3.4	23	78	0	86	25	26	13	34	1.94
10587352--10587378	14	1.9	14	100	0	54	37	33	14	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10596515--10596588	8	9.4	8	89	2	78	27	2	0	70	1.01
10596511--10596588	24	3.3	23	85	7	104	26	2	0	70	1.00
10596523--10596645	8	14.8	8	77	9	113	25	4	0	70	1.04
10596537--10596649	4	27.8	4	67	25	51	25	3	0	70	1.03
10596597--10596656	28	2.1	29	84	9	79	23	10	0	66	1.21
10596869--10596952	6	13.7	6	81	9	89	14	1	4	79	0.95
10596862--10596930	12	6.4	11	77	12	72	13	1	4	81	0.91
10596861--10596930	23	3.2	22	81	13	74	14	1	4	80	0.94
10596862--10596937	29	2.9	24	77	22	82	13	1	5	80	0.95
10599871--10599943	16	4.6	16	81	10	87	17	43	10	27	1.83
10599871--10599943	32	2.3	32	85	4	103	17	43	10	27	1.83
10599965--10600035	33	2.2	33	89	0	106	32	14	28	25	1.94
10606584--10606626	17	2.5	17	88	11	61	23	0	2	74	0.93
10606594--10606632	17	2.2	18	86	4	53	25	0	2	71	0.98
10629910--10630014	20	4.9	21	69	21	74	44	3	2	48	1.35
10629868--10630069	68	3.0	68	99	0	395	42	3	3	50	1.38
10632985--10633017	11	3.1	11	86	4	50	69	18	0	12	1.18
10655203--10655243	20	2.0	20	85	0	55	51	2	7	39	1.43
10665247--10665283	15	2.5	15	80	20	51	59	0	0	40	0.97
10665247--10665282	16	2.2	16	90	9	56	61	0	0	38	0.96
10678479--10678566	44	2.0	44	84	8	115	31	5	25	37	1.79
10678731--10678765	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10680731--10680931	49	4.1	49	94	0	330	50	11	6	30	1.66
10685815--10685885	27	2.5	28	77	20	69	45	2	5	46	1.41
10688635--10688665	15	2.1	14	94	5	53	70	0	9	19	1.14
10693126--10693184	11	5.5	10	83	15	73	22	30	0	47	1.51
10694351--10694407	7	8.1	7	100	0	114	28	0	14	57	1.37
10694403--10694427	7	3.6	7	100	0	50	28	0	16	56	1.41
10698767--10699060	126	2.4	125	87	1	437	26	20	20	32	1.97
10699097--10699394	96	3.1	95	85	4	386	40	16	3	40	1.65
10701293--10701488	100	2.0	101	88	1	295	32	17	16	33	1.93
10704879--10704926	23	2.1	23	84	7	62	47	8	4	39	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145