genome.fa.s2.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  142  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47221982--47222039	30	1.9	30	89	0	89	31	24	3	41	1.71
47222091--47222660	285	2.0	284	96	0	1050	35	18	11	34	1.86
47223913--47223985	23	3.2	23	90	0	110	31	28	19	20	1.97
47224124--47224411	46	6.3	46	100	0	576	26	21	17	34	1.95
47232569--47232626	21	2.8	21	72	15	57	43	3	0	53	1.17
47232006--47232610	331	1.8	331	100	0	1210	32	16	19	32	1.94
47232588--47232621	17	2.0	17	100	0	68	41	5	0	52	1.25
47232591--47232628	17	2.2	17	90	0	58	47	5	0	47	1.24
47235371--47235567	98	2.0	98	92	2	324	37	24	11	26	1.89
47237200--47237232	14	2.4	14	94	0	57	18	15	30	36	1.91
47241050--47241080	13	2.4	13	100	0	62	22	6	16	54	1.64
47240998--47241233	83	2.8	83	99	0	463	27	21	17	33	1.96
47241133--47241163	13	2.4	13	100	0	62	22	6	16	54	1.64
47245942--47246000	31	1.9	31	86	6	84	33	5	11	49	1.62
47250176--47250207	2	16.0	2	100	0	64	50	0	0	50	1.00
47262735--47262767	9	3.7	9	91	0	57	45	0	3	51	1.16
47263916--47263948	9	3.7	9	91	0	57	45	0	3	51	1.16
47265863--47265907	21	2.1	21	87	0	63	55	2	2	40	1.24
47265869--47265934	20	3.3	20	75	16	66	48	4	3	43	1.38
47265960--47265991	16	1.9	17	93	6	57	65	6	0	28	1.16
47271810--47271847	19	2.0	19	94	0	67	39	10	5	44	1.61
47286741--47286802	31	2.0	31	96	0	115	25	14	12	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47287584--47287652	34	2.0	34	94	0	120	24	8	20	46	1.79
47289415--47289473	29	2.0	30	83	3	75	30	6	15	47	1.71
47289649--47289716	29	2.2	31	87	7	95	44	11	8	35	1.72
47289617--47289716	31	3.3	30	79	6	94	47	13	6	34	1.67
47290032--47290063	16	2.0	16	93	0	55	71	3	0	25	1.00
47304459--47304501	21	2.1	21	87	12	63	72	2	0	25	0.97
47304888--47304924	17	2.1	18	90	5	58	43	0	0	56	0.99
47306761--47306792	6	5.3	6	100	0	64	50	15	0	34	1.45
47337576--47337635	27	2.2	27	93	0	102	63	3	1	31	1.20
47337591--47337642	15	3.7	15	73	17	58	61	1	0	36	1.07
47344159--47344221	23	2.7	23	82	0	72	49	15	12	22	1.79
47347537--47347588	21	2.6	19	76	11	52	44	3	5	46	1.45
47349115--47349151	3	12.3	3	100	0	74	67	0	0	32	0.91
47370831--47370868	3	12.3	3	94	5	67	31	2	0	65	1.06
47371298--47371355	22	2.6	22	81	8	64	48	12	1	37	1.51
47371642--47371670	10	2.9	10	100	0	58	72	0	0	27	0.85
47371983--47372424	220	2.0	221	99	0	877	37	14	16	32	1.89
47373894--47373970	16	4.8	16	68	17	52	23	12	18	45	1.84
47373895--47373956	32	1.9	32	83	6	81	20	12	17	48	1.80
47377135--47377190	16	3.7	15	75	13	53	55	17	0	26	1.43
47380527--47380601	35	2.1	36	85	2	98	29	5	9	56	1.53
47381848--47381884	9	4.1	9	100	0	74	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47382617--47382642	5	5.2	5	100	0	52	23	19	19	38	1.93
47386245--47386312	30	2.3	30	86	0	100	25	7	39	27	1.82
47389597--47389669	31	2.4	31	81	6	78	47	1	5	45	1.34
47391692--47391727	16	2.2	16	90	0	54	44	11	5	38	1.63
47391717--47391758	6	7.0	6	100	0	84	33	0	16	50	1.46
47393623--47393709	42	2.0	43	97	2	167	28	18	25	27	1.98
47401858--47401882	13	1.9	13	100	0	50	68	0	0	32	0.90
47407246--47407331	44	1.9	44	85	4	118	36	23	6	33	1.82
47407317--47407372	16	3.5	16	82	0	67	28	23	8	39	1.85
47409204--47409239	16	2.2	16	90	0	54	44	11	5	38	1.63
47412698--47412762	24	2.7	23	71	15	60	49	7	0	43	1.31
47413664--47413909	122	2.0	123	99	0	485	48	8	13	29	1.72
47426776--47426818	17	2.3	19	88	11	63	60	4	11	23	1.50
47430294--47430378	43	2.0	42	97	2	161	55	7	4	32	1.48
47432613--47432666	18	3.0	18	75	5	56	0	42	0	57	0.98
47432599--47432666	15	4.5	15	84	0	82	1	39	1	57	1.17
47435220--47435269	21	2.4	21	93	0	82	14	42	0	44	1.44
47437439--47437489	26	2.2	24	78	21	56	60	5	0	33	1.21
47440367--47440402	6	6.0	6	96	0	54	38	0	61	0	0.96
47440371--47440405	17	2.1	17	88	0	52	40	0	60	0	0.97
47440856--47440915	8	7.2	8	75	7	57	30	0	3	66	1.07
47448109--47448281	72	2.4	71	80	5	186	35	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47448186--47448292	25	4.3	24	73	10	74	32	23	27	16	1.96
47450747--47450807	15	4.1	14	72	16	52	50	4	3	40	1.40
47451119--47451337	109	2.0	110	99	0	431	33	13	14	38	1.86
47451811--47451845	2	17.5	2	100	0	70	51	0	48	0	1.00
47459066--47459116	25	2.0	26	84	3	68	58	0	0	41	0.98
47459888--47459931	6	7.3	6	84	0	52	13	68	11	6	1.39
47461863--47461921	28	2.1	28	96	0	109	55	18	1	23	1.51
47464745--47464789	23	2.0	22	82	4	54	22	4	35	37	1.74
47464862--47464903	19	2.2	19	83	8	50	38	9	4	47	1.57
47467063--47467094	3	10.7	3	100	0	64	0	34	0	65	0.93
47467524--47467553	15	1.9	16	93	6	53	26	13	20	40	1.89
47467997--47468109	56	2.0	56	100	0	226	46	14	10	29	1.78
47477267--47477305	16	2.3	17	82	13	53	76	7	2	12	1.09
47478006--47478031	11	2.4	11	100	0	52	84	7	0	7	0.77
47479187--47479221	16	2.2	16	90	5	54	20	5	17	57	1.60
47484208--47484239	2	16.0	2	100	0	64	50	0	0	50	1.00
47487115--47487152	7	5.4	7	100	0	76	13	0	44	42	1.43
47489649--47489735	20	4.3	20	80	10	88	57	5	0	36	1.23
47489699--47489745	23	2.0	24	95	4	87	51	4	0	44	1.21
47489662--47489755	20	4.7	19	73	21	77	53	6	0	40	1.27
47495777--47495827	24	2.2	24	89	3	77	78	1	13	5	1.02
47496247--47496286	7	5.9	7	97	2	73	90	0	10	0	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47499822--47499863	21	2.0	21	95	0	75	47	7	14	30	1.71
47506103--47506148	21	2.2	21	100	0	92	19	15	13	52	1.75
47507426--47507528	19	5.3	19	70	17	68	51	3	0	43	1.26
47507458--47507557	42	2.3	43	79	6	105	52	3	1	44	1.23
47511638--47511684	21	2.2	21	77	7	51	55	6	8	29	1.55
47527367--47527447	40	2.0	40	100	0	162	37	25	7	29	1.83
47547383--47547941	50	11.2	49	68	9	279	32	24	19	22	1.97
47547318--47547963	100	6.5	100	87	1	857	33	24	19	23	1.97
47548294--47548344	20	2.5	20	87	0	66	21	50	17	9	1.74
47549239--47549312	3	24.7	3	74	0	58	28	5	6	59	1.45
47550025--47550099	7	10.3	7	79	17	73	14	2	9	73	1.19
47550025--47550109	44	1.9	44	95	0	152	15	3	8	72	1.21
47550032--47550128	44	2.2	44	87	5	133	17	5	9	68	1.36
47555847--47556355	72	7.1	72	90	3	785	30	22	20	26	1.98
47558821--47558865	3	15.0	3	100	0	90	66	0	0	33	0.92
47560421--47560453	17	1.9	17	93	0	57	60	12	3	24	1.46
47561030--47561096	32	2.1	33	83	8	84	58	8	2	29	1.44
47563447--47563471	12	2.1	12	100	0	50	36	8	16	40	1.77
47564012--47564072	13	4.7	13	78	8	70	37	19	4	37	1.74
47571074--47571367	57	5.4	56	79	12	333	29	10	21	39	1.86
47571074--47571367	109	2.7	107	90	2	462	29	10	21	39	1.86
47571206--47571367	51	3.1	50	82	12	207	29	9	20	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47573579--47573793	72	3.0	72	88	5	310	27	25	19	27	1.99
47579950--47580005	29	1.9	29	92	0	94	37	1	23	37	1.65
47582880--47583100	72	3.1	71	90	2	318	30	22	19	27	1.98
47588698--47588763	24	2.7	25	88	9	100	33	6	4	56	1.44
47588887--47588957	16	4.3	15	71	16	52	40	2	1	54	1.23
47588903--47588943	15	2.4	19	84	15	54	41	4	0	53	1.22
47591101--47591152	16	3.2	16	80	0	59	42	3	21	32	1.71
47592452--47592636	36	5.1	36	60	14	94	31	20	21	26	1.98
47592452--47592707	36	7.1	36	59	16	91	31	21	20	26	1.98
47592452--47592979	72	7.3	72	93	0	867	31	22	18	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145