genome.fa.s2.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  47  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15215600--15215744	78	1.9	77	81	5	175	20	30	13	35	1.92
15217294--15217335	21	2.0	21	85	0	57	52	0	21	26	1.47
15219146--15219175	16	1.9	15	93	6	51	46	13	13	26	1.80
15223136--15223193	24	2.4	23	81	16	64	72	8	5	13	1.26
15225404--15225470	27	2.4	28	78	14	77	23	29	20	25	1.99
15225443--15225563	57	2.1	57	81	3	136	23	23	17	36	1.95
15226941--15227033	40	2.3	40	87	7	136	36	20	20	22	1.95
15227563--15227612	24	2.1	24	100	0	100	42	4	8	46	1.52
15227622--15227781	7	22.4	7	72	8	72	21	1	30	46	1.60
15227690--15227787	29	3.4	29	75	9	94	21	0	34	43	1.53
15227671--15227787	50	2.3	50	80	1	135	22	0	32	45	1.53
15227719--15227810	14	6.4	14	70	3	67	25	0	34	40	1.56
15227712--15227759	15	3.3	15	88	5	71	16	0	41	41	1.48
15227690--15227811	57	2.1	57	87	0	172	23	0	34	41	1.55
15231578--15231703	50	2.5	51	77	6	139	30	30	14	24	1.94
15235333--15235540	43	4.8	43	79	5	215	27	16	23	32	1.96
15236115--15236291	39	4.5	39	93	0	282	28	2	23	45	1.67
15237424--15237552	53	2.5	52	88	1	186	28	26	12	32	1.92
15237424--15237577	53	2.9	53	85	0	148	28	24	14	32	1.94
15243719--15243769	18	2.7	19	82	11	70	35	11	9	43	1.75
15252891--15252957	27	2.5	26	79	15	66	56	1	2	38	1.24
15261762--15261791	15	2.0	15	93	0	51	30	16	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15270320--15270387	34	2.0	34	94	0	118	30	27	10	30	1.90
15274256--15274372	37	3.2	37	66	19	91	30	4	4	60	1.35
15274241--15274400	74	2.2	74	86	2	214	36	3	3	56	1.33
15277781--15277847	33	2.0	33	91	0	107	38	4	43	13	1.64
15280812--15280857	17	2.8	17	96	3	85	21	34	19	23	1.96
15284542--15284586	12	3.6	12	82	11	54	53	11	2	33	1.49
15284608--15284644	13	2.8	13	87	4	56	54	13	0	32	1.40
15285735--15285835	27	3.7	26	83	7	121	37	13	23	24	1.92
15288839--15289035	50	3.9	50	91	0	286	20	30	23	25	1.98
15293271--15293320	24	2.1	24	96	0	91	28	28	4	40	1.74
15296198--15296268	29	2.4	29	83	0	79	35	28	18	18	1.94
15300451--15300632	91	2.0	91	94	0	319	31	20	3	44	1.69
15313408--15313437	15	2.0	15	100	0	60	60	0	40	0	0.97
15324060--15324306	50	4.8	50	79	4	219	23	27	20	28	1.99
15328984--15329021	17	2.2	17	100	0	76	31	15	5	47	1.68
15344920--15344960	12	3.4	12	86	0	55	9	14	39	36	1.79
15346130--15346225	25	3.8	25	76	2	86	27	21	21	29	1.99
15348165--15348216	21	2.5	21	84	9	63	7	13	7	71	1.31
15355703--15355762	23	2.6	23	74	10	68	23	18	16	41	1.90
15357080--15357108	15	1.9	15	100	0	58	27	13	13	44	1.82
15359183--15359313	67	2.0	67	96	0	244	20	16	34	29	1.94
15367554--15367602	24	2.0	26	88	8	75	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15369559--15369746	95	2.0	97	97	2	362	34	36	10	19	1.86
15371406--15371433	9	3.1	9	100	0	56	57	10	0	32	1.33
15371351--15371517	68	2.5	68	97	1	311	46	8	4	40	1.53
15371496--15371558	23	2.7	23	78	7	65	44	3	3	49	1.34
15374197--15374724	265	2.0	263	90	2	826	41	13	16	28	1.86
15378891--15378953	25	2.5	25	77	12	65	49	1	3	46	1.27
15379941--15379987	23	2.0	23	100	0	94	34	12	12	40	1.82
15385271--15385299	15	1.9	15	100	0	58	10	27	0	62	1.28
15385953--15386014	31	2.0	31	100	0	124	22	6	22	48	1.73
15386913--15386972	21	2.8	22	80	10	61	51	1	1	45	1.21
15386944--15387028	39	2.2	40	89	2	127	62	0	3	34	1.12
15388498--15388659	77	2.1	77	98	0	315	40	7	10	41	1.67
15388942--15388978	19	2.1	18	90	10	58	35	0	2	62	1.10
15388962--15389040	26	3.4	24	69	20	69	43	0	0	56	0.99
15388985--15389017	11	3.0	11	91	8	50	42	0	0	57	0.98
15389140--15389229	45	2.0	44	87	6	128	35	28	5	30	1.80
15389209--15389277	16	4.3	16	90	0	111	21	33	4	40	1.73
15392622--15392651	16	1.9	15	93	6	51	60	0	0	40	0.97
15393586--15393699	52	2.2	52	82	0	129	33	21	21	22	1.97
15400210--15400329	36	3.2	37	75	8	109	8	27	14	50	1.71
15400234--15400329	36	2.6	36	81	3	111	7	28	14	50	1.70
15405263--15405572	154	2.0	154	94	1	550	34	7	19	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15414689--15415052	80	4.6	80	81	2	376	36	26	17	19	1.94
15414748--15415032	40	7.2	40	74	4	236	36	27	16	18	1.93
15414957--15415058	40	2.5	40	79	3	107	37	23	17	21	1.94
15418115--15418161	24	2.0	24	91	0	76	17	36	21	25	1.94
15418120--15418171	24	2.2	24	82	0	59	19	36	19	25	1.95
15419836--15419910	24	3.1	24	86	0	105	17	30	24	28	1.97
15420107--15420150	15	2.9	15	93	0	79	25	6	4	63	1.38
15426110--15426184	37	2.0	37	100	0	150	26	33	10	29	1.90
15426445--15426498	3	18.0	3	92	7	92	35	0	33	31	1.58
15427289--15427400	57	2.0	56	96	1	206	40	16	11	32	1.84
15430588--15430645	19	3.2	20	75	22	65	50	0	0	50	1.00
15435730--15435894	81	2.0	81	92	0	276	35	18	3	43	1.65
15437477--15437557	37	2.2	37	83	14	107	55	2	1	40	1.21
15444944--15445060	62	1.9	61	84	5	157	48	4	5	41	1.45
15447981--15448034	11	4.8	11	79	2	54	27	48	14	9	1.75
15452610--15452699	45	2.0	45	93	0	153	23	20	14	42	1.88
15454774--15454807	3	11.3	3	87	12	52	64	0	0	35	0.94
15455178--15455255	21	3.7	21	96	0	138	37	11	10	41	1.75
15455786--15456062	132	2.1	131	90	2	430	25	24	18	32	1.97
15456498--15456794	132	2.2	132	90	0	477	23	24	22	30	1.99
15458008--15458060	22	2.5	22	87	9	74	0	16	0	83	0.66
15458000--15458047	15	3.0	16	87	6	62	0	20	2	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15458010--15458054	15	2.9	15	81	15	56	0	20	0	80	0.72
15458008--15458057	19	2.5	19	87	12	66	0	18	0	82	0.68
15462265--15462364	52	1.9	51	82	9	123	55	8	7	30	1.56
15462632--15462671	3	13.3	3	84	10	55	67	0	0	32	0.91
15462634--15462685	12	4.1	12	81	16	52	69	1	0	28	0.99
15463041--15463095	19	2.7	21	83	11	87	41	10	5	41	1.63
15463032--15463083	21	2.5	20	79	20	61	38	15	3	42	1.65
15468082--15468112	9	3.4	9	90	0	53	41	0	35	22	1.54
15468788--15468861	21	3.6	21	87	1	105	28	6	6	58	1.50
15469359--15469400	17	2.5	17	80	7	50	42	0	0	57	0.99
15469580--15469839	130	2.0	130	98	1	504	47	4	3	44	1.42
15470858--15470895	7	5.4	7	100	0	76	13	44	13	28	1.81
15470980--15471010	15	2.1	15	93	0	53	32	9	6	51	1.60
15471390--15471423	17	2.0	17	94	0	59	35	8	11	44	1.72
15473368--15473411	23	1.9	23	90	0	70	13	27	22	36	1.92
15475252--15475345	24	4.1	23	71	15	77	46	22	6	24	1.75
15476090--15476197	41	2.6	42	89	5	175	32	25	18	24	1.97
15480031--15480075	14	3.1	15	78	15	58	62	0	2	35	1.08
15486229--15486274	9	5.1	9	91	0	65	34	13	39	13	1.83
15486316--15486380	22	3.2	22	70	20	77	30	3	16	49	1.61
15486327--15486388	19	3.2	19	70	20	65	35	1	12	50	1.51
15486310--15486403	39	2.4	39	98	0	179	35	3	17	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15486310--15486422	39	2.9	38	88	5	111	35	2	16	45	1.62
15500011--15500052	21	2.0	22	85	4	59	40	0	19	40	1.51
15501448--15501540	31	3.0	31	100	0	186	32	9	16	41	1.80
15509086--15509117	3	10.7	3	100	0	64	31	0	0	68	0.90
15509124--15509189	33	2.0	34	96	3	125	18	9	6	66	1.40
15509628--15509717	38	2.5	36	84	10	121	52	1	7	38	1.38
15509628--15509717	36	2.5	34	86	10	126	52	1	7	38	1.38
15510683--15510719	19	2.0	18	89	5	56	72	2	5	18	1.15
15514342--15514374	7	4.9	7	96	3	59	0	15	0	84	0.61
15514387--15514432	17	2.6	17	89	3	65	13	2	4	80	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145