genome.fa.s2.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  120  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40097642--40097706	17	3.6	17	73	17	60	76	6	9	7	1.14
40097557--40097733	96	1.9	94	83	8	234	76	5	9	8	1.14
40099072--40099125	22	2.4	22	81	3	63	53	0	1	44	1.11
40099070--40099122	23	2.3	23	80	3	63	52	0	1	45	1.11
40099102--40099140	16	2.4	16	95	0	69	48	0	7	43	1.31
40099129--40099271	68	2.1	67	93	2	252	41	4	9	44	1.57
40099213--40099240	9	3.1	9	100	0	56	32	0	10	57	1.33
40099335--40099380	23	2.0	23	88	12	69	56	2	0	41	1.11
40102191--40102258	22	3.1	22	95	0	127	29	29	0	41	1.57
40102230--40102288	30	2.0	30	89	0	91	32	33	0	33	1.58
40102208--40102307	52	1.9	52	89	4	157	30	32	0	38	1.58
40102260--40102312	22	2.4	22	84	6	72	35	30	0	33	1.58
40102345--40102409	31	2.1	31	91	5	105	35	0	1	63	1.04
40102358--40102401	21	2.2	20	87	4	61	34	0	0	65	0.93
40105164--40105225	23	2.7	23	80	11	65	41	20	1	35	1.62
40105219--40105399	56	3.2	56	94	1	301	36	11	8	44	1.70
40116656--40116722	33	2.0	33	97	0	125	17	14	25	41	1.88
40128070--40128107	16	2.4	16	90	0	58	34	34	0	31	1.58
40131854--40132232	188	2.0	189	99	0	751	42	7	13	36	1.74
40132337--40132361	7	3.6	7	100	0	50	40	0	0	60	0.97
40132438--40132550	55	2.0	56	98	1	219	52	8	7	31	1.60
40132441--40132563	55	2.2	54	91	4	174	52	8	6	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40151751--40151936	51	3.7	49	81	3	219	23	17	27	30	1.97
40151860--40151940	26	3.2	26	66	22	71	22	14	28	34	1.94
40151948--40152159	43	5.0	43	79	9	256	24	18	24	33	1.97
40151948--40152159	85	2.5	85	94	0	372	24	18	24	33	1.97
40172434--40172463	5	6.0	5	100	0	60	20	0	0	80	0.72
40172653--40172782	30	4.4	29	75	13	113	30	22	6	40	1.80
40173505--40173546	13	3.2	13	86	3	57	76	0	23	0	0.79
40173499--40173548	10	5.1	10	77	20	52	76	0	24	0	0.80
40173499--40173548	9	5.2	9	79	13	55	76	0	24	0	0.80
40173657--40173685	15	2.0	15	93	6	51	75	13	10	0	1.04
40174468--40174648	17	10.3	17	79	7	148	33	10	11	44	1.74
40174468--40174648	35	5.1	35	78	9	172	33	10	11	44	1.74
40174471--40174613	52	2.7	53	85	3	189	29	12	11	46	1.76
40174581--40174665	18	4.8	18	81	9	95	40	5	12	41	1.68
40183026--40183935	76	11.8	76	81	9	897	29	17	19	34	1.94
40183026--40183935	154	5.9	154	79	11	886	29	17	19	34	1.94
40183026--40183935	228	3.9	226	80	11	1009	29	17	19	34	1.94
40184103--40184133	5	6.2	5	100	0	62	19	0	0	80	0.71
40184106--40184141	15	2.3	15	90	4	54	25	0	0	75	0.81
40184329--40184462	30	4.5	29	75	7	108	31	18	7	42	1.78
40184434--40184500	29	2.3	30	77	12	77	31	20	5	41	1.77
40184991--40185058	23	2.9	24	74	12	61	64	1	33	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40185016--40185072	9	6.0	10	84	13	59	71	1	26	0	0.95
40185029--40185072	19	2.4	19	88	3	63	77	2	20	0	0.88
40185457--40185488	15	2.1	15	94	0	55	84	3	12	0	0.74
40186062--40186200	17	7.9	18	78	10	144	28	12	12	46	1.79
40186064--40186206	52	2.7	52	81	6	171	30	12	12	44	1.79
40186060--40186243	18	10.4	18	73	6	101	34	10	11	42	1.76
40186148--40186258	18	6.1	18	79	10	93	38	7	13	40	1.72
40197759--40197799	6	6.8	6	82	0	55	31	31	31	4	1.79
40197759--40197804	18	2.6	18	85	0	56	32	30	30	6	1.83
40198196--40198304	48	2.3	48	85	6	141	45	11	9	33	1.73
40206763--40206801	18	2.2	18	85	0	51	30	28	23	17	1.97
40209653--40209714	29	2.1	29	90	0	97	33	17	29	19	1.95
40214914--40215166	126	2.0	127	96	0	472	40	13	13	33	1.83
40215372--40215439	34	2.0	34	94	0	118	42	17	8	30	1.80
40216248--40216306	10	6.2	9	73	22	50	33	1	1	62	1.15
40216393--40216421	5	5.8	5	100	0	58	20	0	0	79	0.74
40231454--40232029	50	11.5	50	68	5	295	22	20	22	34	1.97
40231447--40232040	100	5.9	100	76	7	524	22	20	22	33	1.97
40231467--40232043	200	2.9	199	82	3	712	22	20	22	34	1.97
40231886--40232052	50	3.4	50	75	0	147	21	19	26	32	1.97
40232163--40232401	44	5.2	44	71	13	131	25	23	18	32	1.97
40232106--40232391	142	2.0	142	92	0	473	28	20	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40233653--40233678	13	2.0	13	100	0	52	15	15	0	69	1.20
40234574--40234607	13	2.8	12	90	4	50	14	2	8	73	1.19
40234573--40234647	6	12.8	6	78	12	50	12	8	9	70	1.33
40234563--40234648	41	2.1	40	85	6	111	10	10	8	70	1.33
40234594--40234658	34	1.9	33	87	3	94	9	7	10	72	1.29
40234574--40234656	40	2.1	39	86	6	114	9	7	8	74	1.21
40234585--40234652	28	2.4	29	82	9	86	8	8	8	73	1.25
40236105--40236176	36	2.0	36	100	0	144	13	22	8	55	1.65
40239016--40239103	44	2.0	44	100	0	176	54	2	15	27	1.53
40243138--40243595	158	2.9	156	83	3	535	36	17	13	32	1.89
40243671--40243874	83	2.5	82	91	3	329	25	6	16	51	1.68
40246218--40246246	6	4.8	6	100	0	58	51	17	0	31	1.45
40250502--40250558	30	1.9	30	82	7	71	50	0	3	45	1.18
40253835--40253887	18	2.9	17	81	10	61	18	0	7	73	1.06
40270767--40270831	28	2.3	28	86	2	85	32	13	18	35	1.90
40272198--40272262	27	2.4	27	89	0	103	43	16	10	29	1.82
40272258--40272313	24	2.3	24	82	14	62	48	16	5	30	1.68
40275175--40275233	29	2.0	29	100	0	118	33	20	6	38	1.79
40284158--40284227	25	2.8	24	82	8	77	50	5	18	25	1.69
40286532--40286642	7	15.9	7	76	3	80	47	0	22	28	1.57
40286561--40286650	21	4.3	21	83	5	101	45	0	23	31	1.53
40287077--40287109	17	1.9	17	88	11	50	63	9	0	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40287391--40287432	22	1.9	22	85	0	57	35	7	0	57	1.26
40287674--40287729	3	18.7	3	100	0	112	67	0	0	32	0.91
40288257--40288285	6	5.0	6	95	4	51	17	0	34	48	1.47
40293169--40293210	15	2.7	16	82	14	52	45	0	2	52	1.13
40293160--40293201	15	2.9	15	82	10	52	47	0	0	52	1.00
40293424--40293476	16	3.3	16	86	0	70	32	28	0	39	1.57
40293432--40293493	16	3.9	16	82	0	70	29	32	1	37	1.67
40307476--40307583	53	2.0	53	94	0	189	38	13	10	37	1.79
40313668--40313721	27	2.0	27	92	0	90	46	12	3	37	1.60
40313775--40314009	117	2.0	118	88	2	348	25	13	16	44	1.85
40331086--40331194	42	2.6	42	92	0	182	24	24	30	20	1.99
40333979--40334005	14	1.9	14	100	0	54	22	7	29	40	1.81
40336297--40336343	24	2.0	23	88	12	69	42	6	8	42	1.60
40339230--40339276	24	2.0	23	88	12	69	42	6	8	42	1.60
40348392--40348505	62	1.9	59	87	5	165	42	3	3	50	1.36
40349286--40349341	20	2.6	22	83	13	80	32	16	8	42	1.79
40359518--40359564	17	2.9	16	82	14	53	76	2	4	17	1.04
40361231--40361267	15	2.2	18	86	13	53	21	24	0	54	1.45
40361722--40361746	2	12.5	2	100	0	50	52	0	0	48	1.00
40362687--40362927	43	5.6	43	88	2	333	33	29	17	19	1.95
40362687--40362927	128	1.9	128	86	1	349	33	29	17	19	1.95
40362687--40362956	43	6.3	42	85	4	317	34	29	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40364610--40364638	14	2.1	14	100	0	58	72	6	0	20	1.07
40364947--40365031	40	2.1	40	86	4	118	50	12	5	30	1.64
40364961--40365068	40	2.7	40	81	4	101	50	11	8	30	1.67
40365052--40365380	86	3.8	85	84	4	365	42	17	9	30	1.80
40365583--40365749	85	2.0	86	81	1	201	41	17	9	31	1.81
40366856--40366883	6	4.7	6	100	0	56	67	0	17	14	1.22
40368528--40368673	72	2.0	71	96	1	265	30	8	8	51	1.64
40369036--40369073	15	2.5	16	83	12	53	36	34	0	28	1.58
40369357--40369399	16	2.7	16	85	10	61	32	44	2	20	1.65
40369347--40369405	15	3.9	14	79	14	55	30	44	1	23	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145