genome.fa.s2.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  77  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25538529--25538572	23	1.9	22	82	17	54	36	25	0	38	1.56
25538620--25538705	45	1.9	45	90	0	136	34	23	13	27	1.93
25542341--25542421	39	2.1	39	95	0	144	39	11	18	30	1.86
25544574--25544620	23	2.0	24	91	4	78	25	27	21	25	1.99
25550966--25551146	41	4.5	41	86	2	240	28	19	22	29	1.98
25550959--25551146	81	2.3	82	88	3	274	28	19	22	30	1.98
25558187--25558410	113	2.0	113	97	0	421	39	5	15	39	1.71
25558858--25558991	23	6.0	23	81	6	159	18	19	23	38	1.93
25558870--25558987	46	2.6	46	89	9	190	16	20	23	38	1.92
25559714--25559834	47	2.6	47	77	5	120	26	16	27	29	1.97
25562556--25562601	23	2.0	22	84	16	58	45	2	26	26	1.65
25562563--25562611	23	2.0	25	84	7	66	46	4	24	24	1.69
25563663--25563702	20	2.0	21	85	5	55	32	40	10	17	1.83
25568198--25568255	18	3.1	18	79	15	64	58	0	1	39	1.08
25568209--25568251	10	4.3	10	82	8	52	65	0	2	32	1.06
25568353--25568423	10	7.2	10	75	13	51	35	1	4	59	1.26
25568361--25568404	11	4.2	11	85	5	56	34	0	4	61	1.16
25586373--25586566	92	2.1	93	99	0	381	43	6	6	43	1.54
25592937--25593352	207	2.0	207	100	0	832	31	32	11	24	1.90
25598659--25598689	12	2.6	12	89	0	53	29	0	0	70	0.87
25601430--25601461	3	10.7	3	100	0	64	68	0	0	31	0.90
25616693--25617066	90	4.1	90	91	1	597	31	22	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25616693--25617007	43	7.0	43	67	12	159	29	23	25	22	1.99
25636820--25636902	37	2.2	37	87	4	114	42	30	10	16	1.83
25649874--25649963	39	2.3	39	88	0	135	27	45	7	18	1.77
25653110--25653155	22	2.1	21	84	11	58	34	23	13	28	1.92
25657573--25657604	15	2.1	15	94	0	55	65	0	18	15	1.27
25658814--25658845	6	5.3	6	100	0	64	0	31	0	68	0.90
25673267--25673331	20	3.3	20	68	12	53	41	20	29	9	1.83
25673305--25673371	20	3.3	20	71	8	55	43	14	28	13	1.84
25673262--25673371	39	2.8	40	83	2	132	42	15	28	13	1.85
25677418--25677465	22	2.2	22	100	0	96	29	18	4	47	1.67
25684300--25684354	28	2.0	27	82	6	67	54	1	1	41	1.21
25685832--25685861	13	2.3	13	94	0	51	30	6	6	56	1.51
25691998--25692031	16	2.2	15	89	5	50	41	0	2	55	1.15
25696733--25696762	13	2.3	13	94	0	51	30	6	6	56	1.51
25697943--25697986	22	2.0	22	86	8	63	54	9	4	31	1.52
25699809--25699911	41	2.5	41	80	0	116	27	19	24	29	1.98
25699993--25700043	25	2.0	26	84	3	68	60	5	7	25	1.47
25700295--25700327	14	2.3	15	94	5	59	30	0	33	36	1.58
25700430--25700471	21	2.0	21	90	0	66	23	0	57	19	1.41
25700534--25700585	7	7.4	7	75	0	50	19	0	44	36	1.51
25700698--25700747	7	7.1	7	81	0	55	26	0	46	28	1.53
25705219--25705406	43	4.4	43	86	3	247	22	16	28	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25708299--25708332	17	2.0	17	88	0	50	55	5	17	20	1.62
25734985--25735011	5	5.4	5	100	0	54	18	0	0	81	0.69
25744141--25744241	49	2.1	49	86	3	141	44	10	7	36	1.69
25751308--25751677	187	2.0	186	88	1	553	42	13	17	26	1.86
25754436--25754508	28	2.6	29	74	10	78	32	20	17	28	1.96
25774295--25774324	13	2.3	13	94	0	51	36	26	26	10	1.88
25777320--25777494	27	6.5	26	73	9	95	29	25	13	32	1.94
25777320--25777495	54	3.3	54	78	7	180	28	25	13	31	1.94
25777369--25777498	27	4.8	27	86	3	190	30	25	11	32	1.91
25782186--25782422	27	8.8	27	79	9	178	32	21	8	37	1.85
25782189--25782422	54	4.3	54	79	7	233	31	21	8	37	1.85
25782189--25782422	81	2.9	82	82	6	273	31	21	8	37	1.85
25785194--25785238	22	2.0	22	91	8	74	22	13	22	42	1.88
25790396--25790741	172	2.0	172	97	0	656	30	10	23	35	1.89
25795005--25795110	17	5.9	17	70	18	63	28	1	2	66	1.16
25795571--25795646	22	3.4	21	84	10	82	21	28	1	48	1.58
25795585--25795646	11	5.6	11	84	5	81	20	30	1	46	1.60
25796813--25796838	7	3.7	7	100	0	52	26	0	15	57	1.38
25799719--25800142	126	3.4	126	93	0	722	26	22	19	31	1.98
25800176--25800295	51	2.4	51	95	0	213	41	23	0	34	1.60
25800288--25800456	46	3.6	45	72	15	139	37	16	2	43	1.61
25800234--25800465	94	2.3	100	84	7	287	38	17	1	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25800316--25800449	51	2.8	52	74	20	155	37	17	1	43	1.59
25800316--25800486	94	1.8	94	83	5	229	40	15	2	41	1.60
25804289--25804348	17	3.5	17	97	0	111	18	21	36	23	1.95
25809063--25811025	979	2.0	979	98	0	3829	28	15	21	34	1.94
25810911--25811640	365	2.0	365	100	0	1460	27	16	22	33	1.95
25814776--25814810	18	1.9	18	88	11	54	37	0	0	62	0.95
25816021--25816057	13	2.8	13	91	0	56	40	21	2	35	1.68
25816202--25816226	7	3.6	7	100	0	50	32	12	12	44	1.78
25816237--25816271	18	1.9	18	88	0	52	40	8	14	37	1.76
25816317--25816363	9	5.2	9	100	0	94	46	10	10	31	1.73
25816373--25816425	27	2.0	27	92	0	88	37	13	0	49	1.42
25817800--25817838	19	2.1	19	100	0	78	35	10	12	41	1.77
25818673--25818710	19	2.0	19	89	0	58	18	2	21	57	1.52
25819055--25819099	23	2.0	23	86	4	65	33	0	4	62	1.15
25824280--25824308	4	7.5	4	92	7	51	75	24	0	0	0.80
25825115--25825158	13	3.5	13	81	3	54	65	2	6	25	1.28
25828283--25828418	67	2.0	68	88	4	204	40	22	2	34	1.69
25842159--25842206	25	2.0	25	87	4	71	68	4	2	25	1.18
25842367--25842398	14	2.1	16	88	11	50	9	6	9	75	1.20
25847328--25847561	50	4.6	50	77	7	206	25	26	20	28	1.99
25847328--25847556	100	2.2	102	80	6	250	24	26	19	28	1.99
25849574--25849622	25	2.0	25	91	0	80	24	12	26	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25849571--25849630	25	2.4	25	85	0	75	30	13	23	33	1.93
25856917--25856950	16	2.2	16	89	5	52	26	5	17	50	1.69
25858145--25858319	45	3.9	45	79	1	199	23	21	12	42	1.87
25858153--25858320	89	1.9	89	86	0	237	23	21	11	42	1.86
25861160--25861188	13	2.2	13	100	0	58	41	17	20	20	1.90
25863822--25863873	20	2.6	20	87	0	77	25	23	0	51	1.48
25864847--25866090	415	3.0	414	91	3	2094	34	17	10	37	1.83
25869253--25869312	7	8.6	7	100	0	120	13	0	0	86	0.57
25869253--25869313	1	61.0	1	73	0	50	13	0	0	86	0.56
25875550--25875622	36	2.0	36	100	0	146	35	15	5	43	1.69
25878013--25878050	2	19.0	2	100	0	76	50	0	50	0	1.00
25879923--25880033	57	2.0	55	81	10	127	32	12	14	40	1.83
25884789--25884830	20	2.1	20	90	0	66	19	42	14	23	1.87
25886679--25886991	89	3.5	90	88	4	458	57	13	5	23	1.57
25886885--25886954	32	2.2	32	82	7	79	64	12	1	21	1.35
25887483--25887597	53	2.1	54	87	1	160	45	20	19	15	1.86
25887483--25887615	53	2.5	53	78	8	144	44	21	18	15	1.87
25888232--25888399	10	16.2	10	71	13	92	70	0	27	1	0.94
25888226--25888396	31	5.6	30	75	15	97	69	0	29	1	0.96
25888731--25889200	158	3.0	152	79	12	567	50	6	11	31	1.63
25895522--25895557	10	3.5	10	88	3	54	0	27	0	72	0.85
25895517--25895559	11	3.8	11	80	17	52	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25895579--25895603	3	8.3	3	100	0	50	0	32	0	68	0.90
25895825--25895861	11	2.9	14	76	23	53	24	0	16	59	1.37
25896053--25896091	20	2.1	18	85	9	51	33	10	17	38	1.84
25897837--25897906	27	2.5	27	80	15	79	35	1	0	62	1.04
25899794--25899862	34	2.0	34	97	0	129	28	8	13	49	1.71
25902164--25902227	16	4.0	16	95	0	119	25	32	4	37	1.77
25902157--25902226	32	2.2	32	97	0	131	25	32	4	37	1.76
25908442--25908474	17	1.9	17	100	0	66	24	6	0	69	1.10
25909370--25909403	16	2.1	16	100	0	68	41	23	11	23	1.87
25909571--25909678	56	1.9	55	96	1	198	37	8	12	40	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145