genome.fa.s2.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  103  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34446290--34446321	16	2.1	16	94	5	57	68	0	31	0	0.90
34453060--34453101	15	2.5	17	82	14	52	57	7	2	33	1.39
34455918--34455952	18	1.9	18	88	11	54	40	0	8	51	1.33
34459679--34459746	22	3.1	21	71	19	66	32	16	16	35	1.91
34459880--34459920	22	1.9	21	85	5	55	58	0	2	39	1.11
34462576--34462613	19	2.0	19	94	0	67	31	13	26	28	1.93
34467243--34467293	19	2.7	19	84	0	66	37	29	5	27	1.80
34468561--34468677	38	3.1	38	83	0	153	35	31	18	13	1.90
34470306--34470366	18	3.3	18	78	15	63	73	0	22	3	0.97
34470718--34470761	20	2.2	21	88	8	65	18	6	4	70	1.27
34471435--34471463	12	2.4	12	100	0	58	37	6	0	55	1.27
34476938--34476993	20	2.7	21	81	13	53	69	7	12	10	1.36
34476949--34476993	21	2.1	23	88	12	69	68	8	8	13	1.38
34479555--34479750	35	5.7	34	85	2	257	38	18	22	19	1.93
34479542--34479754	69	3.1	69	92	0	345	40	17	22	19	1.91
34480012--34480050	15	2.8	13	82	14	51	38	12	5	43	1.65
34485917--34485954	20	1.9	20	88	0	58	42	10	7	39	1.69
34486298--34486328	14	2.1	15	94	5	55	54	9	0	35	1.33
34493651--34493722	25	2.8	25	83	8	76	33	22	26	18	1.96
34493676--34493876	25	7.8	26	70	13	89	34	20	25	19	1.96
34505212--34505269	25	2.3	24	82	8	71	29	22	25	22	1.99
34505309--34505366	25	2.3	25	87	0	89	37	18	27	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34505351--34505424	25	2.9	27	75	15	75	33	18	24	22	1.97
34511079--34511140	33	1.9	32	90	3	97	30	19	4	45	1.71
34511452--34511507	24	2.5	23	80	11	62	58	7	5	28	1.46
34521068--34521097	12	2.5	12	94	0	51	16	30	30	23	1.96
34522322--34522414	25	3.7	25	75	5	80	25	19	26	27	1.99
34526272--34526318	17	2.7	18	77	9	53	40	2	2	55	1.24
34537894--34537996	51	2.1	50	90	3	163	47	11	9	31	1.72
34539999--34540041	18	2.6	16	85	7	59	62	0	2	34	1.08
34539999--34540041	17	2.6	15	82	17	50	62	0	2	34	1.08
34554956--34554998	21	2.0	22	86	8	63	58	0	0	41	0.98
34554991--34555039	19	2.7	19	81	9	57	59	2	2	36	1.21
34555005--34555250	121	2.0	122	99	0	485	46	8	5	39	1.56
34555053--34555303	121	2.1	118	83	8	301	49	9	6	34	1.60
34557451--34557494	23	1.9	23	85	0	61	27	6	11	54	1.61
34562124--34563085	325	3.0	323	86	3	1358	33	12	16	38	1.86
34569635--34569694	32	1.9	32	93	3	104	46	13	6	33	1.69
34571739--34571788	20	2.5	19	80	6	55	38	0	8	54	1.30
34571739--34571790	19	2.7	19	84	3	59	38	0	7	53	1.30
34579323--34579649	163	2.0	164	99	0	647	43	14	11	29	1.81
34591698--34591765	35	2.0	34	94	2	118	60	19	2	17	1.49
34593599--34593633	18	1.9	18	88	0	52	62	2	0	34	1.10
34596450--34596487	12	3.0	13	84	7	60	18	28	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34596879--34596929	21	2.7	19	76	11	52	39	15	11	33	1.84
34597170--34597258	34	2.6	34	75	7	81	26	17	24	30	1.98
34599224--34599261	16	2.4	16	86	4	51	15	2	2	78	0.97
34608164--34608431	123	2.2	125	79	9	282	42	9	8	39	1.68
34611644--34611694	24	2.2	24	77	22	56	33	0	5	60	1.21
34611911--34611942	3	10.7	3	100	0	64	68	0	0	31	0.90
34612262--34612300	14	2.6	14	88	8	51	38	17	10	33	1.84
34617276--34617306	9	3.4	9	90	0	53	25	12	22	38	1.90
34621947--34622131	85	2.2	85	92	0	298	27	16	16	39	1.90
34631202--34631247	23	2.0	23	95	0	83	34	15	13	36	1.86
34631617--34631664	23	2.1	23	96	0	87	31	8	25	35	1.85
34638453--34638508	5	10.6	5	92	7	85	17	1	0	80	0.80
34639838--34639870	17	1.9	17	88	11	50	18	39	18	24	1.92
34650166--34650294	14	9.2	14	71	15	79	31	0	5	62	1.24
34651419--34651447	8	3.6	8	100	0	58	65	0	0	34	0.93
34657288--34657805	27	19.2	27	81	6	516	43	17	16	22	1.88
34657999--34658105	52	2.1	52	92	3	180	18	23	24	33	1.97
34658000--34658102	26	4.0	26	85	2	145	16	24	25	33	1.96
34658208--34658284	28	2.7	29	84	10	95	24	18	20	36	1.95
34665798--34666182	81	4.8	80	87	3	483	18	17	20	44	1.87
34665798--34666182	27	14.4	27	82	8	369	18	17	20	44	1.87
34665798--34666184	54	7.2	53	82	6	442	18	17	20	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34673744--34673774	16	2.0	15	93	6	53	77	0	22	0	0.77
34680437--34680481	18	2.4	19	78	14	58	24	4	6	64	1.37
34714951--34714978	13	2.2	13	100	0	56	0	25	14	60	1.34
34721337--34721375	19	2.2	17	86	9	51	10	10	2	76	1.10
34739236--34739280	14	3.2	15	78	15	60	0	28	0	71	0.87
34739230--34739290	25	2.4	27	81	8	65	0	24	3	72	1.00
34748159--34748318	83	1.9	83	94	0	284	44	11	8	35	1.71
34748296--34748324	15	1.9	15	100	0	58	44	6	6	41	1.58
34751442--34751641	45	4.5	45	76	5	138	33	25	14	26	1.94
34751565--34751660	45	2.1	45	80	3	104	30	23	13	32	1.93
34756608--34756644	14	2.5	15	91	8	58	56	0	8	35	1.29
34757590--34757634	17	2.6	17	79	6	56	75	8	13	2	1.13
34758520--34759057	44	11.5	44	67	18	227	27	21	19	31	1.97
34758558--34759057	98	5.3	93	69	19	288	26	22	19	31	1.98
34758504--34759073	142	4.0	142	100	0	1140	26	21	19	32	1.97
34758980--34759082	44	2.3	44	89	0	161	24	25	20	30	1.99
34777426--34777498	29	2.6	28	89	8	98	50	9	17	21	1.74
34777441--34777498	29	2.0	29	100	0	116	51	10	17	20	1.74
34782240--34782936	347	2.0	347	100	0	1394	28	15	12	43	1.83
34792232--34792262	16	1.9	16	100	0	62	19	12	16	51	1.76
34797874--34797913	15	2.7	15	88	0	53	30	0	20	50	1.49
34801538--34801581	17	2.6	17	92	0	70	54	15	15	13	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34801583--34801630	16	2.8	17	74	20	55	66	0	0	33	0.92
34801576--34801630	22	2.7	20	77	5	56	67	0	0	32	0.91
34801587--34801626	20	1.9	20	85	10	53	65	0	0	35	0.93
34802070--34802138	20	3.5	20	91	0	93	56	7	7	28	1.53
34806182--34806235	14	4.0	14	73	7	58	64	1	0	33	1.04
34806184--34806227	22	2.0	23	86	4	63	65	2	0	31	1.05
34806682--34806722	20	2.0	20	90	0	64	53	4	7	34	1.50
34807960--34807991	14	2.4	14	90	10	50	65	0	6	28	1.16
34808001--34808041	12	3.4	12	93	0	64	70	12	2	14	1.26
34807954--34808029	34	2.2	34	81	4	82	69	5	3	21	1.24
34808001--34808041	18	2.3	18	91	0	64	70	12	2	14	1.26
34809941--34810161	66	3.3	66	97	1	406	50	10	6	32	1.64
34818027--34818089	25	2.6	23	73	9	54	17	25	20	36	1.94
34818179--34818248	24	2.8	24	78	4	68	20	22	22	34	1.97
34825463--34825543	24	3.3	24	76	10	83	35	18	27	18	1.94
34825627--34825675	25	2.0	25	88	4	73	38	16	24	20	1.92
34864424--34864503	27	3.0	27	81	5	99	37	23	22	16	1.93
34864530--34864794	27	9.9	27	80	4	268	34	16	21	26	1.95
34864529--34864794	54	4.9	54	83	2	311	34	16	21	26	1.95
34864530--34864794	107	2.5	108	86	1	354	34	16	21	26	1.95
34864832--34864913	24	3.5	24	75	8	78	23	6	21	48	1.72
34865012--34865067	26	2.2	26	86	0	76	14	21	30	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34865058--34865278	32	6.9	32	78	4	185	19	22	21	36	1.95
34865057--34865278	96	2.3	96	79	6	243	19	22	21	36	1.96
34865298--34865350	26	2.0	26	88	0	79	20	28	18	32	1.97
34866527--34866651	34	3.7	34	86	1	171	22	13	29	34	1.92
34868521--34868656	23	5.9	23	77	5	132	36	23	17	22	1.95
34876110--34876238	40	3.2	40	83	4	154	40	31	15	12	1.84
34880696--34880757	4	15.0	4	93	6	106	0	25	0	74	0.82
34880787--34880854	25	3.0	23	81	14	70	29	7	0	63	1.21
34888634--34888694	17	3.8	17	68	12	56	55	1	6	36	1.36
34900019--34900058	19	2.2	18	86	4	53	42	0	7	50	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145