genome.fa.s2.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  16  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5364911--5365086	64	2.9	56	77	14	149	32	12	19	35	1.90
5364961--5365116	64	2.5	64	86	5	201	26	8	21	42	1.82
5364961--5365140	64	2.9	63	84	5	195	30	10	20	39	1.85
5365226--5365260	14	2.4	15	90	4	54	71	0	22	5	1.07
5365347--5365406	28	2.1	28	85	11	79	38	20	1	40	1.62
5367998--5368030	17	2.0	17	88	5	50	0	24	0	75	0.80
5371339--5371388	11	4.5	11	90	7	66	4	18	0	78	0.91
5371339--5371389	23	2.2	23	89	6	77	3	17	0	78	0.90
5371530--5371612	35	2.4	35	82	6	98	21	10	54	13	1.69
5372452--5373044	76	7.8	76	91	0	848	29	21	19	29	1.98
5372452--5373044	153	3.9	153	90	1	870	29	21	19	29	1.98
5375100--5375133	17	2.0	17	100	0	68	29	17	23	29	1.97
5375830--5375863	17	2.0	17	100	0	68	29	17	23	29	1.97
5374671--5376134	730	2.0	731	98	0	2849	28	20	17	33	1.95
5385907--5385952	15	3.0	15	81	15	58	69	0	2	28	1.00
5386579--5386637	12	5.3	11	80	8	57	0	13	3	83	0.78
5386763--5386982	33	6.5	34	80	8	218	21	10	52	14	1.72
5386763--5386953	68	2.8	69	80	7	214	22	10	52	14	1.72
5386779--5386966	101	1.9	101	86	3	270	20	10	53	15	1.72
5387262--5387371	30	3.8	29	77	10	118	52	2	18	26	1.58
5387955--5388038	29	2.8	29	73	12	80	57	4	3	34	1.37
5388980--5389035	18	2.9	19	87	12	80	53	0	5	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5389812--5389856	22	2.0	22	87	8	65	44	2	0	53	1.13
5389851--5389883	15	2.1	16	88	5	50	66	3	0	30	1.06
5390693--5390730	19	2.0	19	100	0	76	31	10	10	47	1.72
5390806--5390848	18	2.4	18	96	0	77	46	2	0	51	1.13
5395065--5395220	77	2.0	78	98	1	305	51	5	6	36	1.50
5397095--5397140	23	2.0	24	86	4	67	52	0	2	45	1.13
5398485--5398740	109	2.4	108	88	3	367	29	19	13	36	1.91
5405489--5405518	15	2.0	15	100	0	60	40	0	20	40	1.52
5405867--5406359	259	1.9	257	84	4	652	34	12	11	41	1.80
5406986--5407031	11	4.2	11	86	8	58	23	28	0	47	1.52
5406986--5407028	10	4.0	10	82	11	50	23	30	0	46	1.52
5408865--5408908	18	2.4	18	88	0	61	22	25	6	45	1.77
5409329--5409449	49	2.5	49	95	0	215	44	3	7	44	1.48
5409813--5410226	125	3.3	125	91	1	650	29	19	17	33	1.95
5410412--5410444	6	5.3	6	96	3	57	39	45	0	15	1.46
5415241--5415278	3	12.7	3	100	0	76	31	0	0	68	0.90
5415444--5415481	3	12.7	3	94	0	67	28	0	2	68	1.03
5415852--5415970	44	2.7	44	76	5	116	29	18	19	32	1.96
5416257--5416285	11	2.6	11	100	0	58	27	6	24	41	1.80
5426573--5426617	21	2.1	21	88	8	65	62	0	6	31	1.21
5428982--5429278	43	6.8	43	89	2	459	24	28	18	27	1.98
5429625--5429695	21	3.4	21	84	0	88	7	42	15	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5429711--5429901	9	22.2	9	72	16	138	28	1	20	49	1.59
5429707--5429901	25	7.6	25	76	12	166	28	1	21	49	1.58
5429711--5429901	16	11.1	17	70	19	121	28	1	20	49	1.59
5429861--5429885	12	2.1	12	100	0	50	32	0	16	52	1.44
5429914--5429980	30	2.2	30	81	0	71	41	7	10	40	1.67
5430007--5430070	30	2.1	31	88	2	94	39	4	9	46	1.57
5430062--5430103	22	2.0	21	85	4	57	59	4	2	33	1.31
5430159--5430247	28	3.2	28	71	23	98	49	4	3	42	1.39
5430146--5430261	54	2.1	54	98	0	223	52	3	4	39	1.38
5432754--5433112	115	3.1	115	90	0	601	29	19	21	29	1.98
5434503--5434593	45	2.0	45	91	0	146	23	31	8	36	1.85
5435072--5435156	37	2.3	37	93	0	152	12	17	17	51	1.76
5447960--5448156	42	4.6	42	91	3	288	23	19	23	33	1.97
5447960--5448156	85	2.3	85	88	4	292	23	19	23	33	1.97
5448489--5448530	19	2.2	20	87	8	61	23	0	45	30	1.53
5449942--5450017	36	2.1	35	83	7	91	53	22	0	23	1.46
5450572--5450663	46	2.0	47	97	2	177	34	31	15	18	1.92
5450434--5450715	80	3.4	81	75	13	302	31	28	17	21	1.96
5450399--5450715	41	7.7	41	77	9	281	32	27	18	21	1.96
5464260--5464486	44	5.2	44	87	1	305	29	13	23	33	1.93
5464640--5464990	44	7.9	44	84	6	395	31	13	23	32	1.93
5464640--5464991	132	2.6	133	85	4	444	31	13	23	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5466493--5466533	3	14.0	3	89	5	66	36	0	0	63	0.95
5467857--5467918	29	2.2	28	80	11	72	29	11	14	45	1.80
5468120--5468175	22	2.5	22	91	2	85	26	28	1	42	1.65
5468150--5468208	30	2.0	30	89	0	91	28	32	1	37	1.67
5468128--5468227	52	1.9	52	85	0	137	29	30	1	40	1.63
5469226--5469264	7	5.6	7	100	0	78	28	0	12	58	1.34
5470428--5470943	29	17.9	29	84	4	618	43	20	1	33	1.62
5470428--5470943	87	6.0	87	92	2	733	43	20	1	33	1.62
5470732--5470776	24	1.9	23	95	4	81	44	22	0	33	1.53
5471138--5471305	29	5.9	28	84	4	203	45	20	1	32	1.59
5471119--5471305	58	3.2	59	81	8	249	45	20	1	33	1.58
5471119--5471305	86	2.2	87	91	3	306	45	20	1	33	1.58
5474505--5474776	125	2.2	126	91	5	439	33	22	14	29	1.94
5484340--5484522	51	3.6	50	85	2	258	27	15	27	29	1.96
5484340--5484747	102	3.9	102	79	12	421	27	16	26	29	1.97
5484504--5484542	14	2.8	14	96	0	69	30	15	25	28	1.96
5484518--5484738	50	4.4	51	77	8	204	28	17	24	29	1.97
5484555--5484740	101	1.8	100	91	5	311	26	17	26	29	1.98
5484555--5484738	51	3.7	49	76	9	165	26	17	26	29	1.98
5484340--5484744	216	1.9	215	86	4	573	27	16	26	29	1.97
5484811--5484934	33	3.5	33	72	21	124	21	17	27	33	1.96
5484766--5484942	75	2.4	74	91	5	284	23	18	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5485777--5485926	49	3.0	49	87	4	192	24	14	30	32	1.94
5489494--5489545	24	2.2	24	85	0	68	53	9	3	32	1.51
5491421--5491486	31	2.1	31	100	0	132	27	12	25	34	1.91
5492354--5492621	132	2.0	132	99	0	527	41	17	15	25	1.89
5492870--5492967	47	2.0	48	86	9	137	45	6	24	23	1.75
5500348--5500383	18	2.0	18	100	0	72	38	11	22	27	1.88
5507983--5508025	19	2.2	20	83	4	52	34	0	2	62	1.08
5508339--5508396	23	2.6	22	81	5	55	10	18	37	32	1.85
5508351--5508396	22	2.1	22	88	8	67	8	19	41	30	1.82
5508734--5508878	35	4.2	35	76	5	125	24	11	49	14	1.76
5508735--5508868	68	2.0	68	84	0	178	25	11	49	14	1.76
5508735--5508838	33	3.1	33	79	8	102	24	9	50	15	1.73
5509163--5509274	29	3.8	29	87	8	156	50	4	22	23	1.67
5509163--5509275	59	1.9	59	87	8	167	49	4	23	23	1.68
5509314--5509339	13	2.0	13	100	0	52	84	15	0	0	0.62
5510892--5510947	18	2.9	19	87	12	80	53	0	5	41	1.24
5511135--5511405	124	2.2	125	86	5	370	28	14	24	33	1.94
5515851--5516269	28	15.8	28	79	12	429	31	0	21	46	1.56
5515850--5516269	136	3.2	133	86	5	559	31	0	20	46	1.56
5519100--5519133	15	2.3	15	90	5	52	67	5	0	26	1.13
5519330--5519371	22	1.9	22	90	0	66	33	0	33	33	1.58
5519343--5519401	30	2.0	30	89	0	91	35	0	33	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5519321--5519423	52	2.0	51	84	5	136	34	0	32	33	1.58
5519373--5519441	22	3.1	22	91	0	111	39	0	28	31	1.57
5520330--5520368	21	1.9	20	89	5	60	48	0	0	51	1.00
5520363--5520395	15	2.1	16	88	5	50	66	3	0	30	1.06
5523095--5523124	6	5.0	6	100	0	60	66	0	0	33	0.92
5525473--5525518	23	2.0	24	86	4	67	52	0	2	45	1.13
5531814--5531844	9	3.4	9	90	0	53	25	12	22	38	1.90
5532131--5532194	30	2.1	30	85	0	83	21	35	0	42	1.54
5532166--5532198	16	2.1	16	94	0	57	27	30	0	42	1.56
5532243--5532273	16	1.9	16	93	0	53	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145