genome.fa.s2.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  131  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43905306--43905388	19	4.0	22	77	14	61	38	4	16	39	1.70
43905572--43905616	23	2.0	23	81	0	54	20	2	15	62	1.43
43910538--43910563	7	3.7	7	100	0	52	42	42	0	15	1.47
43914024--43914087	21	3.2	21	63	24	57	35	3	15	45	1.62
43914028--43914105	38	2.1	38	97	0	147	37	3	14	44	1.63
43914032--43914098	21	3.4	21	68	16	70	35	4	13	46	1.63
43914044--43914104	19	3.2	19	67	17	54	37	4	13	44	1.65
43914152--43914203	24	2.2	24	85	0	68	15	19	5	59	1.56
43914172--43914273	41	2.5	39	81	10	116	20	24	6	48	1.74
43919861--43919908	13	4.1	13	75	25	61	56	0	18	25	1.42
43919853--43919903	21	2.4	21	96	3	93	56	0	13	29	1.38
43921696--43921742	20	2.3	21	78	10	53	57	8	0	34	1.29
43921727--43921785	10	6.1	10	82	11	52	49	3	1	45	1.28
43930696--43930745	25	2.0	25	92	0	82	30	18	8	44	1.78
43932504--43932574	28	2.3	31	88	11	103	63	1	2	32	1.18
43932531--43932633	40	2.7	39	72	15	115	62	0	2	34	1.11
43932517--43932603	28	3.1	27	80	11	88	66	1	2	29	1.11
43932584--43932624	11	3.8	11	83	6	57	53	0	2	43	1.13
43932584--43932624	21	1.9	20	85	14	55	53	0	2	43	1.13
43932532--43932633	39	2.6	40	74	10	122	61	0	2	35	1.11
43934876--43935080	89	2.3	90	83	5	245	20	27	13	39	1.90
43934876--43935109	30	7.9	30	76	9	178	19	27	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43934890--43935165	119	2.3	118	84	3	356	21	25	12	40	1.89
43934885--43935143	89	2.9	88	80	7	224	21	26	12	39	1.88
43934887--43935149	30	8.9	29	72	13	162	21	25	12	39	1.89
43936371--43936488	25	4.7	25	85	4	121	23	23	21	31	1.98
43937922--43937964	17	2.5	17	96	0	77	20	25	32	20	1.97
43940737--43940979	50	4.7	50	88	3	324	26	20	30	22	1.98
43946380--43946447	30	2.3	30	92	2	111	22	2	17	57	1.53
43950909--43950956	17	2.8	16	81	9	51	66	2	0	31	1.03
43951144--43951215	36	2.0	36	91	0	117	36	20	16	26	1.94
43955610--43955640	13	2.4	13	94	0	53	12	0	35	51	1.40
43958594--43958812	39	5.6	39	90	2	314	46	19	2	31	1.63
43960572--43961619	522	2.0	522	97	0	1999	32	22	13	30	1.93
43965730--43965814	19	4.3	19	72	18	75	58	0	4	36	1.19
43966093--43966134	19	2.3	18	83	4	57	19	4	2	73	1.12
43966028--43966237	103	2.0	105	98	1	406	25	4	8	61	1.45
43966196--43966247	19	2.8	19	88	2	79	19	3	1	75	1.06
43966452--43966615	84	1.9	85	83	8	210	42	4	10	42	1.60
43968328--43968362	2	17.5	2	100	0	70	48	0	0	51	1.00
43972790--43972837	18	2.7	18	83	3	62	75	2	0	22	0.91
43973483--43974991	754	2.0	754	100	0	3018	39	11	11	37	1.77
43981704--43981730	11	2.5	11	100	0	54	22	7	18	51	1.70
43981850--43982097	123	2.0	124	96	1	453	39	14	13	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43983912--43983946	18	2.0	17	88	5	52	45	0	0	54	0.99
43984107--43984200	45	2.1	44	84	5	118	38	26	3	31	1.72
43987618--43987714	29	3.3	29	78	5	106	41	25	13	19	1.88
43987598--43987710	58	1.9	61	85	12	164	39	26	13	20	1.89
43987839--43988037	54	3.7	54	89	1	319	25	23	15	36	1.93
43992758--43992810	19	2.7	20	78	18	58	37	7	0	54	1.29
43995253--43995289	19	1.9	19	88	0	56	59	8	2	29	1.40
43995684--43995718	16	2.1	17	89	5	54	60	2	0	37	1.12
43999420--43999606	24	7.6	25	68	11	73	16	22	20	39	1.92
44013414--44013455	19	2.2	19	95	0	75	23	11	16	47	1.80
44014272--44014390	60	2.0	60	100	0	238	31	13	23	31	1.93
44016828--44016868	5	8.2	5	89	10	50	36	0	0	63	0.95
44016828--44016868	21	2.1	19	86	9	55	36	0	0	63	0.95
44021879--44021911	13	2.5	14	90	9	52	9	15	12	63	1.51
44023257--44023295	20	2.0	20	89	0	60	51	0	2	46	1.14
44023335--44023369	17	2.1	17	100	0	70	54	11	0	34	1.37
44023396--44023434	14	2.7	14	84	4	51	33	10	10	46	1.72
44038926--44038969	23	1.9	24	90	9	74	43	0	2	54	1.12
44039361--44039403	22	1.9	23	95	4	79	41	0	2	55	1.12
44038920--44039788	434	2.0	435	99	0	1731	41	12	9	36	1.76
44047048--44047076	12	2.3	13	94	5	51	27	13	13	44	1.82
44049346--44049439	48	2.0	48	80	4	109	38	18	22	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44065659--44065717	29	2.0	30	90	3	93	49	15	6	28	1.70
44078438--44078479	22	2.0	21	85	4	57	40	0	0	59	0.97
44079207--44079244	19	2.0	20	89	5	60	42	5	2	50	1.39
44080976--44081040	32	2.0	33	96	3	123	18	12	12	56	1.66
44085837--44085895	28	2.1	29	83	3	75	67	10	1	20	1.28
44088803--44088847	22	2.0	24	82	8	58	22	2	22	53	1.57
44089271--44089319	21	2.3	21	79	6	55	48	2	2	46	1.25
44089418--44089461	16	2.6	16	89	7	61	34	0	6	59	1.24
44089407--44089460	25	2.2	25	93	0	90	37	0	3	59	1.15
44089410--44089461	9	6.0	9	91	8	72	34	0	5	59	1.21
44089407--44089467	25	2.4	25	88	0	77	36	1	4	57	1.30
44089631--44089671	20	2.0	20	95	0	73	43	12	9	34	1.75
44090525--44090556	15	2.1	15	94	0	55	12	31	18	37	1.88
44092681--44092724	21	2.0	21	82	8	52	50	0	0	50	1.00
44092981--44093052	22	3.2	22	66	11	65	44	8	4	43	1.53
44094930--44094954	13	1.9	13	100	0	50	32	40	8	20	1.81
44097055--44097826	302	2.6	301	89	3	1159	33	20	15	30	1.93
44098059--44098186	66	1.9	66	82	0	157	20	30	10	38	1.87
44101496--44101532	18	2.1	18	89	0	56	32	0	5	62	1.18
44102450--44102492	20	2.2	20	88	8	63	27	4	0	67	1.10
44104702--44104736	10	3.7	9	88	11	52	40	0	0	60	0.97
44105256--44105282	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44106112--44106161	25	2.0	25	100	0	100	48	8	8	36	1.62
44116505--44116569	16	4.1	16	71	9	62	40	6	24	29	1.79
44122048--44122488	147	3.0	147	85	1	589	25	26	14	34	1.94
44126329--44126369	2	20.5	2	100	0	82	0	48	0	51	1.00
44128923--44128956	3	11.3	3	87	12	52	35	35	0	29	1.58
44130379--44130424	18	2.4	20	75	20	53	34	0	6	58	1.24
44135491--44135527	13	2.8	14	84	12	51	56	0	27	16	1.40
44136629--44136670	18	2.3	18	87	0	57	26	2	7	64	1.32
44136647--44136693	17	2.7	18	80	9	53	36	0	4	59	1.17
44145047--44145123	13	5.9	13	90	0	118	40	25	7	25	1.83
44149512--44149542	3	10.3	3	100	0	62	32	0	0	67	0.91
44149626--44149665	20	2.0	20	90	5	62	45	2	0	52	1.14
44160236--44160357	63	1.9	63	85	3	165	23	25	28	22	1.99
44160859--44160918	29	2.0	30	90	6	95	20	41	0	38	1.52
44162044--44162086	17	2.5	17	84	0	50	83	2	13	0	0.74
44163291--44163566	139	2.0	139	94	0	482	32	20	18	27	1.96
44176785--44176837	3	17.3	3	81	11	63	58	1	1	37	1.20
44179998--44180107	40	2.8	40	76	13	102	33	6	1	58	1.34
44180057--44180102	20	2.3	20	81	3	58	34	4	0	60	1.16
44180090--44180139	8	6.1	8	81	4	64	36	0	0	64	0.94
44180083--44180132	25	2.0	25	100	0	100	36	0	0	64	0.94
44180561--44180607	17	2.8	17	83	9	60	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44180568--44180628	26	2.3	26	82	2	68	32	0	4	62	1.17
44180601--44180636	17	2.1	17	100	0	72	25	0	5	69	1.10
44180563--44180633	10	7.9	10	76	19	59	32	0	4	63	1.14
44184867--44184914	20	2.5	20	86	3	62	35	6	0	58	1.23
44184970--44185057	9	9.8	9	72	11	56	31	2	2	63	1.19
44184972--44185027	27	2.1	26	83	9	69	35	1	1	60	1.17
44187064--44187103	21	2.0	21	90	5	64	47	0	0	52	1.00
44196391--44196421	15	2.1	15	100	0	62	12	0	54	32	1.38
44196894--44196926	16	2.1	16	100	0	66	63	6	0	30	1.18
44204746--44204787	17	2.5	17	84	3	59	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145