genome.fa.s2.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  54  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17602525--17602590	33	2.0	33	100	0	132	21	15	18	45	1.85
17605121--17605182	31	2.0	32	90	9	101	46	19	9	24	1.79
17611079--17611198	9	13.0	9	72	11	82	30	1	2	65	1.16
17611075--17611164	17	5.1	17	75	11	74	34	2	1	62	1.15
17611087--17611182	36	2.6	36	83	5	111	32	2	2	63	1.18
17611079--17611198	19	6.5	18	75	14	84	30	1	2	65	1.16
17611124--17611193	29	2.4	29	77	11	81	30	0	2	67	1.05
17617702--17617772	31	2.3	30	72	11	72	71	0	22	5	1.06
17631950--17631987	19	2.0	19	90	10	60	13	42	31	13	1.82
17631967--17632049	33	2.5	33	90	1	132	13	38	28	19	1.89
17635248--17635344	34	2.8	36	78	9	114	19	20	28	30	1.97
17635332--17635370	13	3.0	13	78	14	53	17	28	33	20	1.96
17638127--17638221	29	3.4	27	76	17	79	61	5	2	31	1.30
17638127--17638221	9	10.2	9	74	15	86	61	5	2	31	1.30
17638761--17638799	20	2.1	19	85	9	53	38	2	2	56	1.27
17638775--17638849	29	2.8	28	78	11	77	33	1	1	64	1.11
17638804--17638845	17	2.5	17	82	14	52	28	0	2	69	1.01
17655998--17656043	24	2.0	23	83	12	58	30	0	17	52	1.45
17663802--17664042	120	2.0	121	99	0	475	38	11	11	38	1.78
17664379--17664424	20	2.3	20	88	3	67	58	2	2	36	1.22
17674650--17674693	3	15.0	3	81	13	56	63	2	0	34	1.07
17674649--17674693	18	2.4	18	88	7	63	62	2	0	35	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17674649--17674696	11	4.5	11	76	23	57	62	2	0	35	1.07
17674653--17674693	14	2.9	14	89	10	57	63	2	0	34	1.08
17675885--17676168	44	6.5	44	70	8	161	28	23	19	28	1.98
17676210--17676602	50	7.7	50	65	8	182	23	26	21	28	1.99
17676186--17676596	100	4.0	100	84	8	497	24	25	21	28	1.99
17676186--17676596	208	2.0	200	82	7	497	24	25	21	28	1.99
17676377--17676587	108	1.9	109	83	6	277	24	25	20	29	1.99
17677488--17677520	16	2.1	16	100	0	66	18	24	6	51	1.68
17678190--17678239	23	2.2	23	89	7	75	12	2	12	74	1.17
17679014--17679079	25	2.6	25	83	9	71	59	6	15	19	1.57
17683027--17683070	3	15.0	3	81	13	56	63	2	0	34	1.07
17683026--17683070	18	2.4	18	88	7	63	62	2	0	35	1.08
17683026--17683073	11	4.5	11	76	23	57	62	2	0	35	1.07
17683030--17683070	14	2.9	14	89	10	57	63	2	0	34	1.08
17683744--17683771	1	28.0	1	100	0	56	0	100	0	0	0.00
17687514--17687550	11	3.2	12	85	11	51	67	0	2	29	1.04
17687692--17687732	22	1.9	22	85	5	57	56	4	2	36	1.34
17687664--17687773	17	5.9	17	70	22	62	64	3	2	29	1.24
17708467--17708645	89	2.0	90	95	1	324	39	8	15	36	1.78
17710203--17710314	41	2.7	41	86	2	136	27	18	23	30	1.98
17710438--17710657	63	3.2	67	84	9	277	30	10	16	42	1.82
17710478--17710583	31	3.4	30	69	18	90	29	10	16	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17714465--17714520	17	3.2	17	76	2	58	33	1	0	64	1.04
17714499--17714546	18	2.7	18	66	0	51	25	4	2	68	1.18
17714578--17714618	19	2.1	20	90	4	66	29	4	2	63	1.28
17715399--17715885	169	2.9	169	86	1	688	26	26	18	27	1.98
17716116--17716256	45	3.1	45	72	9	126	29	24	15	31	1.96
17717530--17717560	6	5.2	6	100	0	62	16	16	0	67	1.23
17720142--17720176	16	2.2	16	89	0	52	42	22	17	17	1.88
17721662--17721706	23	2.0	23	90	0	72	57	4	6	31	1.44
17723561--17723617	20	2.8	20	74	10	53	43	10	12	33	1.76
17723776--17723822	21	2.2	22	78	17	55	17	0	17	65	1.27
17730556--17730645	32	2.8	32	96	0	162	54	16	3	25	1.57
17730553--17730658	32	3.5	30	89	6	128	52	17	2	26	1.58
17730618--17730672	27	2.0	27	86	6	76	50	18	3	27	1.63
17730551--17730690	59	2.3	62	80	8	162	52	17	2	26	1.58
17733886--17733938	17	3.4	17	67	20	51	54	16	11	16	1.70
17734440--17734569	56	2.3	55	82	5	163	65	4	3	26	1.27
17734440--17734582	10	16.0	8	68	23	65	65	4	2	27	1.25
17734522--17734582	19	3.6	17	75	20	56	70	3	0	26	1.02
17739234--17739283	21	2.4	21	75	0	55	28	34	10	28	1.89
17739756--17739804	18	2.5	19	87	12	73	30	0	8	61	1.25
17739756--17739804	9	5.1	9	78	11	53	30	0	8	61	1.25
17739751--17739868	18	6.2	19	69	16	66	36	1	4	57	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17758404--17758447	19	2.3	19	80	0	52	6	31	2	59	1.36
17759289--17759313	13	1.9	13	100	0	50	28	8	8	56	1.57
17763848--17763897	25	2.0	25	100	0	100	40	8	16	36	1.77
17766598--17766636	21	1.9	20	89	5	60	28	23	23	25	1.99
17767434--17767546	30	4.2	27	76	12	99	48	16	14	20	1.80
17767434--17767546	28	4.2	28	78	10	103	48	16	14	20	1.80
17770263--17770292	15	1.9	16	93	6	53	46	0	0	53	1.00
17773217--17773253	4	9.2	4	93	0	65	72	0	27	0	0.84
17773786--17774007	111	2.0	111	99	0	435	29	13	18	38	1.89
17774017--17774069	28	1.9	28	84	3	72	43	7	1	47	1.42
17777114--17777157	18	2.4	18	78	10	54	40	15	2	40	1.60
17777672--17777716	23	1.9	24	81	4	56	24	51	2	22	1.60
17779653--17779716	33	1.9	33	83	0	83	29	26	21	21	1.99
17779681--17779738	28	2.1	27	87	3	80	31	25	22	20	1.98
17780069--17780258	27	7.2	26	77	11	165	22	13	19	44	1.86
17780069--17780260	79	2.4	80	83	8	250	22	13	19	44	1.86
17789971--17790030	30	2.0	30	96	0	111	45	13	20	21	1.85
17791384--17791414	16	1.9	16	93	0	53	41	3	16	38	1.64
17795491--17795605	43	2.7	43	83	4	153	23	18	26	32	1.97
17802456--17802480	13	1.9	13	100	0	50	32	4	24	40	1.73
17803598--17803720	43	2.9	42	82	2	147	27	15	23	33	1.95
17810088--17810259	27	6.4	27	86	4	186	22	16	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17810085--17810259	81	2.2	81	83	2	217	22	17	18	41	1.90
17811382--17811410	13	2.1	14	93	6	51	27	41	0	31	1.56
17813321--17813362	21	2.0	21	95	0	75	16	23	16	42	1.88
17813303--17813496	27	7.4	26	81	11	236	18	17	20	43	1.88
17819027--17819166	41	3.4	41	90	3	219	25	19	24	30	1.98
17819336--17819370	2	17.5	2	93	0	61	45	0	0	54	0.99
17820165--17820260	48	2.0	48	100	0	192	35	2	14	47	1.56
17822297--17822376	41	2.0	40	87	7	117	20	20	7	52	1.70
17825548--17825630	37	2.2	37	93	0	139	18	12	31	38	1.87
17825916--17825953	12	3.2	12	100	0	76	7	15	31	44	1.75
17825942--17826053	39	2.8	39	78	9	120	39	21	18	20	1.93
17826103--17826303	41	4.9	41	94	0	348	18	23	29	28	1.98
17826569--17826684	41	2.8	41	84	2	135	23	22	25	29	1.99
17827371--17827399	15	1.9	15	100	0	58	20	0	34	44	1.52
17827460--17827531	33	2.2	33	90	5	110	19	5	43	31	1.74
17828491--17828732	130	1.8	130	91	3	396	41	14	11	32	1.82
17834947--17835176	43	5.4	42	87	2	307	20	16	33	29	1.95
17834968--17835176	85	2.4	86	91	0	330	22	16	33	28	1.95
17836771--17836800	2	15.0	2	100	0	60	0	0	50	50	1.00
17838693--17838761	36	1.9	36	96	0	129	26	10	23	40	1.86
17841577--17841621	22	2.0	22	100	0	90	55	26	4	13	1.57
17845463--17845503	19	2.2	18	87	12	57	24	17	9	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17846042--17846364	160	2.0	161	99	0	639	33	23	11	30	1.91
17848508--17848562	26	2.3	23	78	9	56	41	7	1	49	1.41
17849645--17849679	18	1.9	18	88	11	54	54	34	2	8	1.46
17849966--17850261	100	3.0	99	85	2	389	31	20	20	27	1.98
17849977--17850260	50	5.7	50	66	5	144	31	21	20	27	1.97
17849968--17850326	100	3.6	100	83	3	384	31	20	21	26	1.98
17850726--17850760	18	1.9	18	88	11	54	54	34	2	8	1.46
17859514--17859555	20	2.1	20	95	0	75	47	0	7	45	1.30
17859582--17859633	3	17.0	3	76	11	52	30	5	1	61	1.30
17861008--17861059	26	2.0	26	100	0	104	42	11	7	38	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145