genome.fa.s2.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  109  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36624751--36624891	41	3.4	41	88	1	210	29	32	18	19	1.96
36629483--36629524	3	14.0	3	100	0	84	33	0	0	66	0.92
36629861--36630280	147	2.8	149	88	5	602	41	3	10	44	1.56
36630232--36630294	31	2.1	31	84	3	83	31	3	9	55	1.48
36629871--36630345	147	3.2	150	86	6	555	41	3	10	44	1.56
36630812--36630858	24	1.9	24	83	12	60	31	6	6	55	1.51
36631417--36631454	3	12.7	3	100	0	76	68	0	0	31	0.90
36633599--36633693	48	2.0	48	87	4	138	44	21	14	20	1.87
36634632--36634702	30	2.4	29	92	2	115	22	8	18	50	1.73
36634633--36634702	29	2.4	30	92	2	115	22	8	18	50	1.74
36638136--36638231	21	4.6	21	78	0	102	45	15	20	17	1.85
36642918--36642954	18	2.1	18	90	10	58	62	5	0	32	1.18
36644459--36645148	100	6.9	99	84	5	691	23	19	24	33	1.97
36644459--36645114	200	3.3	199	83	6	776	23	19	23	33	1.97
36644553--36645151	50	12.0	50	69	8	288	23	19	24	32	1.98
36646450--36646501	7	7.4	7	80	8	61	11	15	3	69	1.32
36651977--36652007	15	2.1	14	94	5	53	61	6	0	32	1.21
36653190--36653248	21	2.9	21	80	9	61	15	1	5	77	1.01
36654026--36654144	40	3.0	40	100	0	238	30	25	22	21	1.99
36654639--36654684	18	2.7	17	93	6	76	67	0	6	26	1.15
36654814--36655005	23	8.2	23	75	14	90	57	4	6	31	1.42
36654826--36655005	24	7.6	23	76	14	152	58	4	5	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36654882--36655029	46	3.2	45	80	7	145	58	3	4	34	1.34
36654829--36655003	70	2.4	73	79	8	191	57	4	5	32	1.41
36654944--36655032	23	3.9	22	78	10	90	57	1	3	38	1.23
36654968--36655070	24	4.3	24	71	18	72	58	2	3	34	1.31
36658587--36658871	142	2.0	142	94	1	500	31	12	16	39	1.86
36663954--36664008	21	2.6	21	91	0	92	21	9	40	29	1.84
36667107--36667295	94	2.0	92	82	2	225	36	9	22	31	1.86
36668599--36668642	21	2.1	21	95	0	79	9	13	31	45	1.75
36670932--36671050	18	6.5	18	82	3	67	36	15	18	30	1.91
36670938--36670978	20	2.0	20	90	0	64	39	12	17	31	1.86
36670924--36671050	36	3.5	36	78	2	128	33	15	20	29	1.94
36671175--36671272	50	2.0	49	89	2	151	37	35	8	18	1.81
36673071--36673152	30	3.0	28	74	10	71	63	1	3	31	1.19
36673789--36673830	21	2.0	21	86	4	59	57	7	2	33	1.39
36674607--36674640	17	1.9	18	94	5	61	32	0	0	67	0.91
36675089--36675139	25	2.0	25	96	0	93	25	3	9	60	1.45
36677898--36677940	18	2.5	17	85	7	52	62	6	0	30	1.21
36680495--36680980	99	4.9	98	75	12	433	28	16	14	41	1.87
36688056--36688100	3	15.0	3	100	0	90	33	0	0	66	0.92
36689028--36689058	1	31.0	1	100	0	62	100	0	0	0	0.00
36689261--36689289	4	7.2	4	100	0	58	24	0	24	51	1.48
36695521--36695557	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36696194--36696219	5	5.2	5	100	0	52	23	19	19	38	1.93
36696909--36697099	95	2.0	96	98	1	375	45	17	6	30	1.74
36701235--36701261	7	3.9	7	100	0	54	44	14	0	40	1.46
36714114--36714614	30	16.6	30	87	0	633	30	11	17	40	1.84
36720508--36721190	228	3.0	227	80	2	731	28	25	24	20	1.99
36724227--36724366	50	2.8	50	81	1	181	22	28	24	24	1.99
36728443--36728538	48	2.0	48	95	0	174	30	30	12	27	1.93
36730655--36730793	50	2.8	50	82	1	179	21	27	25	25	1.99
36730892--36730921	13	2.3	13	94	0	51	50	13	3	33	1.58
36750975--36751003	10	3.0	10	95	5	51	51	0	10	37	1.36
36752159--36752221	30	2.1	30	81	0	72	31	20	17	30	1.96
36755767--36755862	41	2.3	42	85	5	124	25	23	32	18	1.97
36760099--36760347	129	1.9	129	85	1	347	31	27	16	24	1.96
36760107--36760371	43	6.2	43	82	3	291	30	27	16	25	1.96
36764087--36764141	26	2.1	27	96	3	103	29	18	7	45	1.76
36775775--36775913	44	3.1	44	75	2	152	30	20	23	25	1.99
36775798--36775926	44	2.9	46	73	6	156	30	21	22	25	1.99
36775750--36775926	89	2.0	89	93	2	302	31	19	23	26	1.98
36776082--36776369	44	6.5	44	75	5	274	29	19	24	25	1.98
36776457--36776647	44	4.3	44	68	12	140	28	20	24	26	1.99
36776356--36776648	132	2.2	132	95	1	518	28	20	24	26	1.99
36776660--36776765	45	2.4	44	82	7	117	26	17	31	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36776735--36776969	44	5.7	43	71	14	156	28	21	23	26	1.99
36781821--36782018	14	13.9	14	65	14	55	46	30	2	20	1.62
36781918--36781960	22	2.0	22	81	9	52	46	32	0	20	1.51
36782215--36782363	41	3.7	41	84	4	178	30	28	18	22	1.97
36782398--36782493	39	2.4	39	81	10	97	18	21	21	37	1.94
36782424--36782509	40	2.2	39	91	2	136	23	25	19	31	1.98
36783409--36783664	84	3.1	84	77	9	238	47	9	9	32	1.69
36783810--36783979	87	2.0	87	82	2	207	44	10	12	32	1.76
36783913--36784050	73	1.9	73	84	3	188	45	11	11	31	1.76
36787264--36787328	21	3.1	21	88	0	94	24	6	36	32	1.80
36794781--36794826	21	2.2	22	84	7	60	36	10	32	19	1.87
36796945--36797118	55	3.4	55	66	19	165	23	2	9	64	1.36
36796919--36797118	99	2.0	100	99	0	393	26	3	8	63	1.37
36796994--36797045	24	2.1	25	82	3	61	30	1	1	65	1.14
36805214--36805247	12	2.9	11	87	12	50	67	17	11	2	1.34
36805430--36805513	36	2.2	35	79	12	87	67	3	4	23	1.25
36805461--36805512	12	4.5	11	74	11	50	75	1	1	21	1.00
36805455--36805502	25	2.0	24	84	12	62	72	2	4	20	1.11
36805487--36805511	6	4.2	6	100	0	50	84	0	0	16	0.63
36807084--36807131	24	2.0	24	100	0	96	37	25	4	33	1.75
36812379--36812444	13	5.0	13	73	1	60	40	7	16	34	1.77
36820405--36820436	6	5.3	6	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36820679--36820766	39	2.3	39	88	4	124	37	2	6	53	1.40
36823827--36823875	20	2.4	21	83	10	57	24	20	4	51	1.65
36823835--36823875	22	2.0	20	85	9	55	26	24	4	43	1.74
36830177--36830256	41	2.0	40	88	7	119	35	26	6	32	1.81
36845350--36845414	31	2.1	31	100	0	130	16	24	32	26	1.96
36852352--36852730	142	2.7	142	96	0	695	39	18	23	18	1.92
36853595--36853631	17	2.2	17	90	0	56	24	18	8	48	1.75
36854588--36854717	66	2.0	66	84	0	170	27	20	20	31	1.97
36876553--36876599	25	1.9	24	82	4	58	38	10	10	40	1.75
36876804--36876856	20	2.8	19	81	18	67	52	1	1	43	1.23
36876813--36876860	25	1.9	25	83	8	62	52	2	2	43	1.24
36876771--36876915	68	2.1	71	82	7	172	52	2	3	41	1.33
36887208--36887253	7	6.7	7	85	5	67	32	26	13	28	1.93
36887658--36887703	23	2.0	23	100	0	92	30	0	21	47	1.51
36891045--36891155	31	3.7	30	73	8	82	38	13	12	35	1.83
36892890--36892964	31	2.4	31	82	4	80	41	2	5	50	1.39
36905690--36905736	16	2.9	16	84	6	51	48	2	2	46	1.25
36909661--36909698	20	2.1	18	85	14	51	28	0	13	57	1.36
36910419--36910495	20	3.8	19	70	20	59	9	33	23	33	1.86
36910420--36910505	20	4.2	20	69	10	57	11	32	22	33	1.90
36913121--36913285	29	5.8	28	79	10	156	35	20	15	28	1.93
36913124--36913321	57	3.4	56	79	11	165	36	20	13	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36913127--36913321	29	6.8	28	76	9	130	36	20	13	29	1.91
36916820--36916857	2	19.0	2	100	0	76	50	0	0	50	1.00
36927296--36927357	26	2.4	26	91	0	97	38	12	12	35	1.82
36927791--36927821	4	7.8	4	92	0	53	74	3	0	22	0.96
36934156--36934198	21	2.0	22	90	9	70	30	0	6	62	1.21
36940792--36940828	19	1.9	19	94	0	65	45	10	13	29	1.77
36942920--36942948	9	3.3	9	95	4	51	48	0	0	51	1.00
36951578--36951648	35	2.0	35	100	0	142	46	5	19	28	1.72
36960524--36960570	24	1.9	24	86	4	67	34	0	36	29	1.58
36960697--36960813	55	2.1	55	92	3	191	28	11	34	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145