genome.fa.s2.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  52  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16992271--16992380	50	2.2	50	83	0	130	26	21	31	20	1.98
16997941--16998586	126	5.1	126	87	2	888	27	17	17	37	1.92
16998651--16998759	34	3.3	34	76	11	100	46	14	0	38	1.45
16998865--16998903	15	2.6	15	87	0	51	56	33	0	10	1.33
16998795--16998885	42	2.1	42	84	6	121	46	28	1	24	1.60
17000476--17000518	2	21.0	2	85	4	59	46	0	0	46	1.03
17007466--17007538	30	2.4	30	93	0	128	49	13	8	28	1.71
17029632--17029670	6	6.5	6	87	0	60	35	0	64	0	0.94
17029636--17029672	12	3.1	12	100	0	74	43	0	56	0	0.99
17035542--17035595	19	2.8	19	94	0	99	37	16	9	37	1.81
17035519--17035595	38	1.9	40	87	10	113	38	16	7	36	1.78
17036144--17036272	45	2.9	45	88	2	179	24	24	23	27	2.00
17036356--17036620	44	6.1	45	68	15	144	26	23	19	29	1.98
17036919--17037038	44	2.7	44	80	10	147	31	26	15	25	1.96
17037051--17038057	88	11.4	88	90	0	1512	20	23	26	28	1.99
17037078--17037392	44	7.2	44	62	9	131	21	23	26	28	1.99
17037210--17037788	44	13.2	43	59	6	129	20	24	26	28	1.99
17039383--17039415	14	2.3	15	89	5	50	27	33	12	27	1.92
17044308--17044345	3	12.7	3	100	0	76	65	0	0	34	0.93
17044565--17044604	15	2.7	15	96	0	71	62	15	0	22	1.32
17044580--17044624	23	2.0	23	86	0	63	62	13	0	24	1.31
17044833--17044881	19	2.6	19	86	0	80	36	14	12	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17047361--17047418	26	2.2	26	84	3	71	43	25	6	24	1.79
17048082--17048148	33	2.0	33	100	0	134	52	8	11	26	1.68
17049264--17049334	32	2.3	31	85	7	90	22	21	22	33	1.97
17051116--17051162	24	2.0	24	91	0	76	40	8	4	46	1.54
17051382--17051425	3	14.7	3	100	0	88	68	0	0	31	0.90
17056758--17056788	2	15.5	2	93	0	53	48	0	48	3	1.17
17058163--17058222	30	2.0	29	87	12	86	30	3	15	51	1.59
17058164--17058230	30	2.2	30	84	10	84	31	2	11	53	1.52
17058414--17058474	31	2.0	30	87	6	88	44	11	8	36	1.71
17069580--17069809	116	2.0	113	91	2	370	35	12	18	33	1.88
17073617--17073749	39	3.4	38	81	4	149	30	15	19	34	1.92
17073617--17073776	78	2.1	78	82	4	189	28	15	20	35	1.93
17075578--17075617	20	2.0	20	90	4	64	37	10	35	17	1.83
17082520--17082698	89	2.0	89	97	0	340	45	16	7	30	1.76
17083559--17083628	35	2.0	35	94	0	122	47	11	5	35	1.64
17087178--17087207	12	2.5	12	100	0	60	20	0	63	16	1.31
17087391--17087431	21	2.0	21	85	9	57	43	0	34	21	1.53
17087469--17087505	9	4.1	9	89	0	56	29	8	13	48	1.71
17087557--17087587	9	3.4	9	90	0	53	38	22	12	25	1.90
17089147--17089199	20	2.7	21	82	8	58	33	1	1	62	1.17
17090691--17090922	9	25.1	9	65	20	70	30	3	4	61	1.31
17090894--17090933	19	2.1	19	85	4	53	27	5	7	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17091320--17091354	3	11.7	3	100	0	70	0	31	0	68	0.90
17097035--17097108	39	1.9	39	91	2	123	60	0	1	37	1.05
17108332--17108380	23	2.1	22	79	17	55	34	8	6	51	1.57
17109769--17109801	2	16.5	2	93	0	57	48	0	3	48	1.17
17110846--17110870	6	4.2	6	100	0	50	16	32	0	52	1.44
17117004--17117061	30	1.9	30	86	6	82	18	36	0	44	1.50
17119121--17119155	18	1.9	18	88	0	52	34	0	0	65	0.93
17120400--17120434	18	1.9	18	88	0	52	34	0	0	65	0.93
17121231--17121280	22	2.3	22	82	6	57	36	4	10	50	1.55
17136784--17136899	38	3.1	38	81	1	144	35	30	18	15	1.92
17143383--17143629	50	4.8	50	77	7	178	28	20	26	23	1.99
17154575--17154648	25	3.0	25	79	0	76	33	21	22	21	1.97
17158708--17158746	19	2.1	19	100	0	78	56	15	7	20	1.63
17161916--17162098	61	3.0	61	76	7	149	41	16	5	36	1.72
17162463--17162598	60	2.2	60	77	2	139	33	5	16	45	1.69
17165381--17165463	3	30.0	3	76	13	72	2	28	1	67	1.11
17165378--17165463	8	10.5	8	74	17	70	2	29	1	67	1.10
17165376--17165463	14	6.1	14	73	19	65	2	28	1	68	1.09
17165381--17165449	11	6.1	11	79	12	77	2	28	0	68	1.04
17167992--17168021	1	30.0	1	100	0	60	0	0	0	100	0.00
17168547--17168666	59	2.0	59	93	0	204	26	21	11	40	1.88
17169545--17169577	16	2.1	16	100	0	66	24	12	6	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17170381--17170595	42	5.1	42	80	3	200	24	19	16	39	1.91
17179018--17179078	19	3.2	18	84	11	77	59	0	1	39	1.08
17179039--17179095	26	2.1	27	87	9	80	59	0	0	40	0.97
17178987--17179093	10	11.4	10	67	13	57	60	0	1	37	1.07
17179009--17179102	46	2.1	44	84	11	120	57	0	1	41	1.06
17179142--17179264	48	2.5	48	73	16	110	34	1	2	60	1.19
17179231--17179280	22	2.4	21	80	6	57	30	2	0	68	1.01
17179291--17179460	89	1.9	89	85	2	234	35	7	17	39	1.78
17179290--17179483	89	2.2	88	80	2	217	36	7	15	40	1.77
17180673--17181308	241	2.6	241	82	8	735	28	11	14	46	1.78
17192712--17193262	276	2.0	276	96	0	1021	27	16	16	38	1.91
17193364--17193427	31	2.1	31	84	0	83	43	7	7	40	1.62
17200179--17200224	4	11.5	4	95	0	83	52	21	0	26	1.47
17203329--17203360	16	2.0	16	100	0	64	43	6	18	31	1.75
17205785--17205838	24	2.3	24	78	12	58	51	7	3	37	1.48
17206894--17207259	183	2.0	183	88	0	543	20	15	25	38	1.92
17221918--17221970	16	3.2	16	94	5	97	37	37	0	24	1.56
17222199--17222247	20	2.5	20	83	9	57	36	14	6	42	1.70
17222649--17222673	5	5.0	5	100	0	50	0	60	40	0	0.97
17222694--17222813	11	11.5	11	72	19	71	54	0	3	41	1.23
17222693--17222800	41	2.7	40	86	2	155	56	0	2	39	1.20
17222728--17222829	52	1.9	53	88	5	154	57	0	3	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17227286--17227320	2	17.5	2	100	0	70	51	0	48	0	1.00
17227721--17227745	7	3.6	7	100	0	50	44	0	56	0	0.99
17239887--17239952	21	3.0	23	77	22	79	25	4	0	69	1.07
17239889--17239963	23	3.2	24	73	24	72	26	5	1	66	1.21
17240056--17240119	23	2.9	22	73	17	60	14	6	1	78	1.02
17244884--17245022	40	3.5	40	73	8	133	31	25	17	25	1.97
17245446--17245491	23	2.0	23	95	4	83	0	26	0	73	0.83
17245443--17245517	4	18.2	4	74	15	55	2	24	1	72	1.06
17246502--17246530	15	1.9	15	100	0	58	55	0	10	34	1.34
17251177--17251202	7	3.7	7	100	0	52	26	0	0	73	0.84
17251210--17251270	26	2.3	26	86	5	79	37	0	1	60	1.07
17273003--17273071	27	2.6	27	93	4	113	40	10	1	47	1.46
17273128--17273194	27	2.5	27	90	0	98	19	28	35	16	1.93
17273241--17273318	18	4.5	17	78	15	72	66	0	33	0	0.92
17273243--17273314	10	6.6	10	73	17	54	68	0	31	0	0.90
17273243--17273325	24	3.6	23	73	12	71	67	0	32	0	0.91
17273246--17273319	14	5.1	13	71	25	51	68	0	31	0	0.89
17273246--17273325	34	2.8	28	75	24	85	67	0	32	0	0.91
17273261--17273419	38	4.3	36	79	12	137	66	0	31	1	1.02
17273263--17273387	10	12.7	10	69	14	64	66	0	31	2	1.05
17273277--17273325	18	2.6	19	75	18	57	65	0	34	0	0.93
17274001--17274069	27	2.5	28	93	6	115	40	10	0	49	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17274071--17274114	9	4.8	9	85	2	52	86	4	4	4	0.79
17274071--17274114	18	2.4	19	92	3	72	86	4	4	4	0.79
17275294--17275330	17	2.2	17	100	0	74	29	16	8	45	1.76
17276285--17276313	14	2.1	14	100	0	58	37	6	0	55	1.27
17279393--17279542	38	4.3	32	74	23	92	0	33	0	66	0.97
17279454--17279564	18	6.1	18	73	15	86	0	32	0	65	1.05
17279485--17279564	34	2.8	28	73	24	76	0	32	1	66	1.00
17279443--17279533	38	2.4	38	96	0	164	1	36	0	62	1.02
17279525--17279567	22	1.9	23	85	4	61	0	30	2	67	1.03
17279487--17279568	28	2.7	30	73	19	80	0	32	1	65	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145