genome.fa.s2.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  116  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38887622--38887659	3	12.7	3	100	0	76	68	0	0	31	0.90
38887922--38888153	49	4.7	48	83	5	216	21	29	22	25	1.99
38887922--38888164	50	4.9	50	82	5	253	21	30	22	26	1.99
38887924--38888151	99	2.3	99	81	3	262	21	30	22	25	1.99
38887924--38888200	50	5.5	50	83	4	236	22	29	22	25	1.99
38889623--38889804	51	3.6	51	83	3	206	28	18	26	27	1.98
38892692--38892778	25	3.5	25	95	0	156	28	18	31	21	1.97
38892698--38892806	50	2.2	50	83	3	130	30	18	27	23	1.98
38897271--38897302	2	17.0	2	87	12	50	50	0	0	50	1.00
38907434--38907608	87	2.0	88	98	1	343	50	5	3	40	1.43
38915522--38915560	19	2.1	19	100	0	78	25	15	0	58	1.37
38918372--38918405	10	3.5	10	84	8	52	67	0	0	32	0.91
38922923--38922987	23	2.8	23	95	0	112	33	24	21	20	1.97
38922976--38923000	13	1.9	13	100	0	50	32	16	32	20	1.94
38925126--38925196	24	2.9	23	81	8	70	26	4	1	67	1.17
38935582--38935728	58	2.5	58	78	0	159	38	12	27	21	1.90
38935778--38935839	32	1.9	32	93	0	106	41	17	24	16	1.89
38937319--38937362	22	2.0	22	82	8	54	45	9	20	25	1.80
38943023--38943047	13	1.9	13	100	0	50	68	0	0	32	0.90
38954412--38954479	27	2.5	27	80	4	93	17	22	38	22	1.93
38954533--38954584	18	2.7	18	85	8	59	67	3	26	1	1.18
38954529--38954585	20	2.8	19	77	15	60	68	3	26	1	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38957931--38957962	6	5.3	6	96	0	55	3	34	31	31	1.73
38959866--38960013	21	7.2	21	74	16	116	58	11	0	29	1.38
38959866--38960015	19	7.4	19	73	20	110	58	11	0	30	1.38
38959866--38960015	41	3.7	41	68	20	125	58	11	0	30	1.38
38959866--38960049	102	1.8	101	88	4	280	57	12	1	29	1.43
38960150--38960201	3	18.3	3	84	11	74	0	36	0	63	0.95
38960154--38960198	11	4.1	11	83	16	58	0	37	0	62	0.96
38960146--38960201	14	4.1	14	95	2	96	0	35	0	64	0.94
38960146--38960198	17	3.2	17	82	15	67	0	35	0	64	0.94
38960145--38960213	14	4.6	16	87	10	60	0	36	0	63	0.94
38960151--38960210	14	4.2	14	95	2	93	0	38	0	61	0.96
38961351--38961411	26	2.3	26	77	0	68	44	13	3	39	1.60
38974781--38974819	13	3.0	13	82	14	53	0	7	7	84	0.77
38978650--38978732	33	2.5	31	75	11	76	42	13	9	34	1.77
38978879--38979050	91	1.9	88	83	3	218	39	20	8	31	1.82
38979525--38979715	89	2.2	87	85	8	253	33	7	17	41	1.77
38979525--38979737	89	2.4	85	80	13	232	33	7	16	42	1.76
38988439--38988724	30	9.3	30	83	4	320	43	17	8	30	1.78
38993324--38993383	30	2.0	30	96	0	111	25	3	15	56	1.54
39002888--39002915	13	2.2	13	100	0	56	64	35	0	0	0.94
39003158--39003185	13	2.2	13	100	0	56	64	35	0	0	0.94
39002754--39003294	270	2.0	271	98	1	1059	39	18	17	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39020013--39020076	1	64.0	1	85	0	83	1	4	1	92	0.50
39020000--39020073	10	7.0	10	83	13	78	1	8	2	87	0.68
39020001--39020072	34	2.2	33	90	7	112	1	6	2	88	0.65
39025136--39025180	23	2.0	23	81	0	54	55	22	0	22	1.44
39030014--39030038	2	12.5	2	100	0	50	52	48	0	0	1.00
39031280--39031387	9	11.7	9	74	14	87	66	1	0	30	1.08
39031281--39031355	17	4.9	15	69	26	59	69	1	1	28	1.05
39031305--39031407	20	5.2	20	75	15	72	66	2	1	29	1.17
39031291--39031408	30	3.9	29	77	13	98	65	2	2	29	1.19
39031317--39031378	10	6.0	11	76	14	60	66	1	0	32	1.02
39031324--39031408	21	4.3	19	77	15	84	65	3	2	28	1.21
39031296--39031398	28	3.5	31	81	9	92	65	1	1	31	1.15
39031329--39031406	40	2.0	40	84	5	104	64	3	2	29	1.25
39031837--39031871	17	2.1	17	89	5	54	34	17	8	40	1.80
39038572--39038711	41	3.4	41	91	1	210	40	13	22	24	1.90
39042232--39042739	265	1.9	265	93	0	874	38	15	12	32	1.85
39045514--39045561	23	2.1	23	92	0	78	29	8	14	47	1.73
39053213--39053239	13	2.1	13	100	0	54	44	7	14	33	1.73
39053384--39053434	21	2.5	20	87	6	68	25	17	23	33	1.96
39054524--39054572	21	2.3	21	89	0	71	24	10	36	28	1.88
39062128--39062217	46	2.0	46	93	0	153	35	12	23	28	1.91
39064472--39064527	25	2.2	25	87	6	78	25	17	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39075308--39075456	41	3.6	40	81	3	118	30	20	20	28	1.97
39075328--39075472	41	3.5	41	88	0	191	31	20	19	28	1.97
39081977--39082005	4	7.2	4	100	0	58	24	0	24	51	1.48
39087466--39087511	22	2.0	22	83	12	56	43	13	0	43	1.43
39088642--39088695	24	2.2	24	86	6	72	70	3	20	5	1.23
39089737--39090268	17	32.1	17	68	15	211	47	11	11	29	1.75
39089847--39090107	131	2.0	128	81	8	305	46	11	11	30	1.75
39090065--39090096	16	2.0	16	100	0	64	43	6	6	43	1.54
39090075--39090128	18	2.8	20	88	8	76	38	9	9	42	1.69
39089719--39090211	148	3.3	148	99	0	968	46	11	11	30	1.75
39090467--39090657	95	2.0	95	95	0	346	34	17	15	33	1.91
39091030--39091078	18	2.7	18	80	0	62	2	10	12	75	1.13
39091178--39091242	11	6.1	11	80	8	64	0	27	0	72	0.85
39091191--39091239	19	2.5	19	83	9	55	0	30	0	69	0.89
39091797--39091985	30	6.4	29	74	7	125	37	5	25	31	1.78
39094355--39094424	20	3.5	20	71	9	70	31	4	7	57	1.45
39097370--39097414	23	2.0	23	91	4	74	37	6	13	42	1.70
39103414--39103837	125	3.4	125	84	2	591	29	17	22	30	1.97
39105789--39105836	21	2.3	21	81	0	51	4	25	35	35	1.75
39106091--39106130	18	2.2	18	90	0	62	42	7	27	22	1.80
39109623--39109754	33	3.7	34	72	22	108	31	25	20	22	1.98
39109704--39109962	33	7.6	33	66	26	130	33	27	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39109656--39109967	103	3.0	103	90	0	500	32	27	18	21	1.97
39111465--39111494	14	2.2	13	94	5	51	76	0	23	0	0.78
39115185--39115419	62	3.8	61	93	0	407	34	6	11	47	1.64
39115295--39115323	14	2.1	14	100	0	58	51	6	0	41	1.28
39115356--39115384	14	2.1	14	100	0	58	51	6	0	41	1.28
39115185--39115413	123	1.9	124	95	0	415	34	6	10	47	1.65
39115400--39115427	8	3.5	8	100	0	56	28	0	21	50	1.49
39117231--39117291	4	15.2	4	96	0	113	49	0	24	26	1.51
39117289--39117330	3	14.0	3	100	0	84	66	0	0	33	0.92
39118826--39118882	18	3.2	18	79	0	69	3	29	38	28	1.73
39119499--39119528	14	2.1	14	93	0	51	43	6	10	40	1.64
39122651--39123040	194	2.0	194	99	0	771	52	2	7	37	1.44
39125826--39125852	3	9.0	3	100	0	54	66	0	0	33	0.92
39127115--39127209	25	3.8	25	73	5	68	21	28	17	32	1.96
39131133--39131195	27	2.4	27	89	2	92	36	0	1	61	1.05
39140257--39140296	16	2.5	16	88	8	55	70	2	0	27	1.01
39141348--39141398	15	3.5	15	78	10	61	17	9	37	35	1.83
39154279--39154348	15	4.8	15	84	7	90	35	40	8	15	1.78
39154279--39154348	28	2.4	30	80	4	90	35	40	8	15	1.78
39164481--39164521	19	2.2	19	95	0	73	43	12	4	39	1.63
39165214--39165245	3	10.7	3	100	0	64	68	0	0	31	0.90
39170464--39170489	10	2.6	10	100	0	52	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39170585--39170615	12	2.7	11	90	9	53	29	0	0	70	0.87
39171414--39171481	24	3.1	22	68	24	54	47	1	5	45	1.36
39171414--39171502	42	2.1	42	83	8	110	47	3	4	44	1.40
39171990--39172025	17	2.1	17	100	0	72	27	0	13	58	1.36
39176004--39176051	22	2.2	20	80	20	53	62	10	2	25	1.38
39176009--39176052	19	2.2	19	88	8	61	59	11	2	27	1.44
39179278--39179329	21	2.5	21	84	3	70	36	1	40	21	1.64
39183149--39183334	45	4.2	45	82	6	209	34	25	16	23	1.95
39183155--39183334	90	2.0	88	87	4	254	34	26	16	23	1.95
39189591--39189633	21	2.0	21	100	0	86	41	23	4	30	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145