genome.fa.s2.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  132  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44211604--44211640	15	2.5	15	100	0	74	24	13	24	37	1.91
44212462--44212568	56	1.9	55	90	1	169	39	7	12	41	1.71
44213568--44213600	13	2.4	14	90	5	50	57	0	0	42	0.98
44217226--44217283	29	2.0	30	82	3	73	41	8	6	43	1.62
44217723--44217762	21	1.9	21	85	10	55	40	20	0	40	1.52
44218855--44218879	13	1.9	13	100	0	50	0	12	0	88	0.53
44221830--44221874	23	2.0	23	95	0	81	35	13	4	46	1.63
44221828--44221883	23	2.4	23	84	3	67	42	12	3	41	1.60
44222397--44222446	21	2.4	22	80	10	59	46	0	2	52	1.12
44224369--44224941	4	143.2	4	100	0	1146	24	0	24	50	1.50
44225060--44225086	2	13.5	2	100	0	54	51	0	0	48	1.00
44244398--44244511	58	2.0	58	87	0	165	35	21	15	27	1.94
44246011--44246229	110	2.0	107	92	5	359	22	17	11	48	1.79
44248220--44248427	24	8.4	25	69	13	101	20	24	20	35	1.96
44248226--44248391	25	6.6	25	71	8	99	20	25	19	34	1.96
44248418--44248490	25	2.9	25	72	0	65	26	27	15	31	1.95
44253224--44253298	25	3.1	25	84	5	93	20	20	16	44	1.87
44256327--44256473	68	2.2	68	83	4	190	30	19	20	29	1.97
44257245--44257286	20	2.0	21	86	4	59	42	2	4	50	1.36
44257511--44257544	18	2.0	17	88	11	52	35	5	0	58	1.22
44258249--44258284	18	2.0	18	88	0	54	11	13	2	72	1.23
44258549--44258713	90	1.8	90	85	0	231	26	13	15	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44265463--44265536	38	1.9	38	100	0	148	50	21	2	25	1.62
44265611--44265646	3	12.0	3	100	0	72	66	0	0	33	0.92
44265852--44265976	54	2.3	55	88	4	182	44	16	6	32	1.73
44266868--44266898	7	4.4	7	100	0	62	29	0	0	70	0.87
44268854--44268958	53	2.0	54	90	7	171	47	7	9	35	1.65
44271841--44271919	24	3.2	24	77	16	81	34	0	1	64	1.02
44271842--44271908	23	2.7	24	84	11	91	34	0	1	64	1.03
44272238--44272322	20	4.0	21	69	16	68	42	10	1	45	1.46
44272221--44272311	45	2.0	45	97	0	173	42	13	2	41	1.56
44278511--44278569	23	2.4	25	72	16	61	32	1	0	66	1.02
44281771--44281856	11	8.2	11	68	24	53	0	23	1	75	0.87
44281768--44281849	15	5.4	14	75	13	65	0	20	1	78	0.83
44281773--44281852	4	20.5	4	75	16	71	0	22	1	76	0.86
44281760--44281838	33	2.4	33	83	8	99	1	18	1	78	0.89
44281809--44281858	7	7.0	7	81	4	55	0	28	0	72	0.86
44282408--44282539	30	4.4	30	73	12	103	40	3	21	34	1.71
44283825--44283884	21	2.9	20	78	7	66	41	25	6	26	1.80
44285259--44285285	2	13.5	2	100	0	54	48	0	0	51	1.00
44288095--44288194	38	2.6	37	79	4	110	43	14	7	36	1.72
44288139--44288866	18	39.6	18	70	17	315	41	11	13	33	1.80
44288264--44288309	21	2.1	21	84	11	58	32	8	8	50	1.64
44288373--44288417	22	2.0	22	91	0	72	35	8	11	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44288140--44288855	111	6.5	110	74	16	330	41	11	13	33	1.80
44288339--44288455	58	2.0	58	83	6	148	39	10	13	36	1.79
44288397--44288865	111	4.2	109	76	14	346	41	11	13	33	1.81
44288394--44288854	74	6.3	74	70	17	196	40	11	13	33	1.81
44288500--44288550	17	3.0	17	80	11	59	41	17	13	27	1.87
44288199--44288700	203	2.5	205	89	5	763	41	11	13	33	1.81
44288574--44288623	23	2.2	23	89	7	75	32	6	12	50	1.64
44288608--44288692	35	2.5	36	81	16	101	43	12	15	28	1.83
44288709--44288753	24	1.9	23	86	4	63	37	6	8	46	1.61
44288511--44288854	131	2.7	129	76	13	355	42	11	13	32	1.81
44289113--44289156	20	2.2	20	84	8	63	43	9	13	34	1.76
44289114--44289156	19	2.2	19	88	12	61	44	9	13	32	1.76
44289318--44289365	5	9.0	5	90	4	60	64	0	0	35	0.94
44289325--44289366	6	7.5	6	94	5	63	66	0	0	33	0.92
44289318--44289366	10	4.5	11	87	12	75	65	0	0	34	0.93
44289318--44289374	28	2.0	28	86	6	80	64	0	0	35	0.93
44289516--44289636	10	11.9	10	80	13	124	0	20	0	79	0.73
44289516--44289635	39	3.0	38	79	16	129	0	20	0	80	0.72
44289740--44289781	17	2.3	19	88	8	61	0	16	4	78	0.91
44289744--44289781	20	1.9	19	89	5	58	0	15	2	81	0.80
44289743--44289782	12	3.2	12	82	6	53	0	15	2	82	0.77
44289919--44289956	13	2.9	13	88	0	58	0	28	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44289894--44289957	10	6.3	10	76	18	53	0	20	1	78	0.84
44290035--44290085	20	2.6	21	82	14	65	0	41	0	58	0.98
44290037--44290093	18	3.1	18	74	18	53	0	36	0	63	0.95
44290295--44290440	30	4.9	30	80	6	154	39	4	23	32	1.74
44290326--44290439	59	1.9	59	85	3	158	41	3	22	32	1.71
44290611--44291189	71	7.6	79	75	13	434	33	20	17	28	1.95
44290620--44291212	154	3.9	155	87	6	747	35	19	16	28	1.94
44292084--44292131	10	4.8	10	76	7	53	0	6	10	83	0.81
44292077--44292145	35	2.0	35	85	5	95	2	8	8	79	1.02
44303280--44303389	37	3.0	36	80	6	123	43	15	8	32	1.76
44303298--44303497	17	10.8	19	68	17	86	43	13	10	33	1.78
44303280--44303853	18	31.5	17	69	17	191	42	11	12	32	1.79
44303318--44303444	53	2.4	53	80	7	150	43	12	10	33	1.76
44303276--44303442	17	9.5	16	68	18	57	44	13	10	31	1.76
44303429--44303467	20	1.9	20	89	5	60	43	10	5	41	1.61
44303478--44303527	16	3.0	17	77	16	59	46	14	12	28	1.79
44303544--44303593	23	2.2	23	89	7	75	32	6	12	50	1.64
44303641--44303723	23	4.0	23	69	23	67	40	8	8	42	1.65
44303642--44303737	41	2.5	39	78	8	106	42	10	10	36	1.73
44303316--44303848	36	14.6	37	69	19	227	42	11	12	33	1.79
44303826--44303902	34	2.2	37	86	6	106	41	6	10	41	1.65
44304099--44304142	20	2.2	20	84	8	63	43	9	13	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44304100--44304142	19	2.2	19	88	12	61	44	9	13	32	1.76
44304310--44304346	6	6.5	6	93	6	60	67	0	0	32	0.91
44304304--44304346	22	2.0	22	90	9	70	67	0	0	32	0.91
44304303--44304345	10	4.0	11	88	11	63	65	0	0	34	0.93
44304303--44304345	5	8.0	5	89	5	50	65	0	0	34	0.93
44304304--44304354	23	2.2	24	82	10	70	66	0	0	33	0.92
44304494--44304581	10	8.9	10	80	16	78	0	20	1	78	0.82
44304514--44304607	10	9.0	10	75	13	91	0	19	0	80	0.70
44304514--44304602	21	4.2	22	81	16	100	0	19	0	80	0.70
44304519--44304606	33	2.7	33	89	3	133	0	20	0	79	0.73
44304516--44304607	12	8.2	12	75	17	83	0	19	0	80	0.71
44304715--44304745	16	1.9	16	93	0	53	0	12	6	80	0.89
44305245--44305381	29	4.6	30	76	12	131	38	3	24	32	1.73
44305245--44305381	59	2.3	59	80	5	152	38	3	24	32	1.73
44307848--44307913	26	2.5	26	78	4	71	33	19	9	37	1.84
44308479--44308534	16	3.8	16	68	18	57	41	3	7	48	1.48
44309289--44309330	16	2.4	17	80	11	50	35	0	0	64	0.94
44323153--44323202	3	16.7	3	100	0	100	32	0	0	68	0.90
44335157--44335572	213	2.0	210	80	6	473	35	17	20	26	1.95
44335157--44335572	106	3.9	105	76	8	405	35	17	20	26	1.95
44337801--44337834	17	2.0	17	88	0	50	23	0	26	50	1.50
44337759--44337998	108	2.2	108	95	2	430	32	2	16	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44337909--44337942	17	2.0	17	88	0	50	23	0	26	50	1.50
44350882--44351348	159	3.0	156	87	8	694	59	14	9	17	1.60
44351416--44351445	2	15.0	2	100	0	60	50	0	50	0	1.00
44354677--44354711	17	2.1	17	88	0	52	37	2	0	60	1.12
44354678--44354758	28	3.1	26	82	12	87	37	1	6	55	1.33
44354710--44354764	28	2.0	28	88	0	83	36	0	10	52	1.37
44356009--44356084	38	2.0	38	94	0	134	44	1	3	50	1.29
44358297--44358393	42	2.3	43	84	8	128	40	14	26	18	1.89
44358796--44358978	50	3.8	48	81	7	217	27	20	31	21	1.98
44358801--44358981	97	1.8	99	89	5	287	28	20	30	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145