genome.fa.s2.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  71  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23635615--23635774	53	3.0	53	82	5	198	18	18	21	41	1.90
23635620--23635774	80	1.9	81	89	1	240	18	17	21	42	1.89
23635619--23635774	27	5.8	27	85	1	197	18	17	21	42	1.89
23640491--23640561	35	2.0	35	94	0	124	49	8	0	42	1.33
23643795--23644007	50	4.3	50	80	4	209	23	28	21	27	1.99
23643927--23644088	81	2.0	81	92	0	270	20	32	20	25	1.97
23644008--23644218	50	4.2	50	95	0	377	20	32	20	25	1.97
23643882--23644138	131	2.0	131	91	1	417	19	32	21	25	1.97
23643843--23644188	181	1.9	181	89	0	539	20	31	21	26	1.98
23648078--23648105	12	2.3	12	100	0	56	78	0	0	21	0.75
23648394--23648434	21	2.0	21	85	9	57	17	4	41	36	1.71
23658092--23658214	63	2.0	63	95	3	221	36	8	13	40	1.76
23658741--23658816	35	2.2	35	82	0	89	36	19	19	23	1.95
23659232--23659275	22	2.0	22	90	4	70	20	0	4	75	0.98
23659237--23659279	19	2.3	19	84	8	52	18	0	4	76	0.95
23662851--23662879	14	2.0	15	93	6	51	13	0	6	79	0.93
23663169--23663216	20	2.3	20	85	3	60	14	10	27	47	1.76
23663424--23663594	91	1.9	91	90	0	270	21	15	29	33	1.94
23666822--23666882	24	2.5	24	81	0	68	54	21	6	18	1.66
23670870--23670945	39	1.9	39	94	0	134	19	17	17	46	1.85
23672186--23672226	21	1.9	22	85	5	57	43	26	2	26	1.67
23674344--23674394	25	2.0	25	92	0	84	39	5	19	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23676348--23676374	12	2.2	12	100	0	54	29	51	7	11	1.64
23682711--23683004	146	2.0	147	99	0	581	34	17	19	28	1.94
23692266--23692363	42	2.3	43	85	1	126	35	26	13	24	1.92
23710549--23710585	9	4.2	9	83	16	51	83	0	16	0	0.64
23710552--23710585	16	2.1	17	94	5	61	85	0	14	0	0.60
23725847--23725906	29	2.1	29	100	0	120	30	15	31	23	1.95
23728175--23728221	22	2.1	23	84	11	62	8	17	0	74	1.05
23743785--23743867	28	2.9	27	81	11	103	27	27	22	21	1.99
23743789--23743866	30	2.7	29	83	11	97	25	28	23	23	1.99
23743960--23744035	26	2.9	26	82	0	89	36	21	23	18	1.95
23744208--23744434	27	8.4	27	80	5	226	19	18	18	43	1.89
23744208--23744434	81	2.8	81	84	3	269	19	18	18	43	1.89
23748071--23748114	23	1.9	23	95	0	79	38	25	11	25	1.89
23748073--23748122	23	2.2	23	88	0	73	42	22	12	24	1.87
23750755--23750814	20	2.9	20	80	14	61	48	15	21	15	1.81
23750787--23750854	20	3.4	20	80	6	75	44	16	23	16	1.86
23758190--23758214	12	2.1	12	100	0	50	32	16	32	20	1.94
23763158--23763200	22	2.0	22	100	0	86	23	9	23	44	1.82
23769804--23769865	25	2.5	25	83	0	88	33	25	19	20	1.96
23773974--23774096	40	3.1	40	87	0	165	35	22	27	13	1.92
23774008--23774069	20	3.1	20	75	9	72	37	24	29	9	1.87
23785578--23785878	152	2.0	152	92	1	496	34	15	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23792107--23792227	27	4.4	27	79	9	113	47	16	0	35	1.47
23792296--23792426	47	2.7	47	87	4	174	48	19	0	31	1.55
23792350--23792428	29	2.7	29	76	5	88	49	20	0	30	1.49
23792274--23792705	165	2.6	163	88	5	626	45	18	1	34	1.58
23792150--23792694	9	59.1	9	69	15	219	46	17	1	34	1.59
23792409--23792589	47	3.7	47	80	8	179	43	20	2	33	1.64
23795338--23795447	21	5.2	21	85	0	139	38	15	42	3	1.64
23795338--23795447	42	2.6	42	92	0	175	38	15	42	3	1.64
23795749--23796031	42	6.7	43	86	2	349	24	18	24	32	1.97
23795724--23796031	85	3.7	84	84	3	361	24	17	24	33	1.96
23795749--23796015	127	2.1	127	85	1	347	25	18	23	32	1.97
23796511--23796629	9	13.2	9	81	7	134	30	10	18	40	1.85
23802567--23802591	7	3.6	7	100	0	50	60	0	0	40	0.97
23804079--23804134	3	18.3	3	88	3	85	32	1	1	64	1.14
23804290--23804325	16	2.2	16	95	0	63	41	2	5	50	1.40
23808315--23808374	6	10.3	6	82	12	63	85	10	0	5	0.75
23808315--23808374	24	2.6	22	87	10	84	85	10	0	5	0.75
23810376--23810836	44	10.7	44	72	11	260	30	21	20	27	1.98
23810327--23810786	174	2.7	169	90	3	706	30	20	20	28	1.97
23810501--23811339	214	3.9	216	83	7	843	30	20	20	27	1.98
23810764--23811008	80	2.8	89	76	17	289	29	20	22	27	1.98
23810632--23811333	219	3.2	219	83	6	879	30	20	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23810905--23811317	44	9.4	44	72	11	247	31	19	20	27	1.97
23815908--23815938	4	7.8	4	92	0	53	25	3	0	70	1.02
23815945--23816192	3	82.7	3	100	0	496	33	0	0	66	0.92
23817366--23817420	27	2.0	27	92	0	92	40	7	14	38	1.74
23818919--23818984	33	2.0	33	82	11	82	57	1	3	37	1.23
23819581--23819665	27	3.2	25	75	21	84	56	1	2	40	1.20
23819554--23819661	9	11.4	9	66	18	51	57	0	4	37	1.26
23819795--23819830	17	2.1	18	89	5	56	66	2	0	30	1.06
23820161--23820200	19	2.1	19	85	0	53	47	0	12	40	1.41
23822308--23822370	24	2.5	25	82	7	65	23	6	7	61	1.46
23823224--23823249	10	2.6	10	100	0	52	23	30	0	46	1.53
23823828--23823858	3	10.3	3	92	0	53	35	3	32	29	1.73
23831343--23831416	37	2.0	37	97	0	139	25	13	31	29	1.94
23838179--23838207	14	2.0	15	93	6	51	20	0	3	75	0.94
23847022--23847063	20	2.1	20	100	0	84	30	14	19	35	1.91
23849264--23849302	18	2.2	17	86	13	53	33	0	20	46	1.51
23849528--23849718	23	8.3	23	82	0	238	23	19	24	32	1.97
23849529--23849718	46	4.1	46	93	2	310	23	19	24	32	1.97
23851477--23851683	42	4.9	43	81	3	233	28	25	17	28	1.97
23851477--23851677	85	2.4	85	82	5	246	28	24	17	28	1.97
23855315--23855356	3	14.0	3	100	0	84	33	0	0	66	0.92
23857978--23858006	4	7.2	4	100	0	58	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23858798--23858993	14	13.8	14	73	9	128	46	31	1	21	1.58
23858769--23858988	7	30.9	7	71	8	95	44	32	0	21	1.59
23859124--23859172	7	6.7	7	88	6	71	53	28	2	16	1.54
23859543--23859777	41	5.7	41	78	5	242	29	27	20	22	1.99
23859794--23859877	40	2.1	40	82	4	98	20	21	19	39	1.93
23859814--23859929	39	2.9	39	85	8	155	23	19	18	37	1.94
23878467--23878498	16	2.0	16	93	0	55	62	0	3	34	1.11
23885562--23885681	39	3.1	39	92	0	195	32	33	19	15	1.92
23890228--23890296	27	2.6	26	75	13	68	39	2	23	34	1.70
23895013--23895072	27	2.2	27	96	0	111	13	8	35	43	1.74
23900685--23900921	43	5.5	43	89	0	357	24	21	22	31	1.98
23900685--23900938	129	2.0	128	92	0	427	25	21	21	31	1.98
23900685--23900968	129	2.2	129	89	3	392	25	22	21	30	1.99
23913953--23914473	84	6.2	83	80	3	524	35	17	17	30	1.93
23915243--23915303	19	3.1	19	66	25	54	27	14	19	37	1.91
23915214--23915323	40	2.7	41	84	5	143	27	20	21	30	1.98
23915380--23915495	40	2.9	39	84	2	151	27	23	20	28	1.99
23917856--23917906	12	4.4	11	78	11	57	45	7	19	27	1.78
23917850--23917907	24	2.4	24	80	5	73	44	6	18	29	1.76
23917913--23917938	12	2.2	12	100	0	52	38	7	15	38	1.76
23918438--23918494	26	2.1	27	83	3	71	29	1	5	63	1.27
23920948--23921103	81	1.9	80	84	7	208	28	0	15	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23920862--23921421	198	3.0	181	84	8	641	30	0	15	53	1.48
23921029--23921567	100	5.3	96	78	11	469	31	0	14	53	1.48
23921019--23921569	198	2.7	204	84	6	663	31	0	15	52	1.48
23926656--23926787	41	3.2	41	90	2	219	20	25	26	27	1.99
23926659--23926787	42	3.1	42	90	1	215	20	25	25	27	1.99
23927409--23927438	14	2.1	15	93	6	53	13	6	53	26	1.64
23928436--23928468	12	2.9	12	86	13	52	51	0	6	42	1.26
23928431--23928501	29	2.4	29	83	6	90	49	1	4	45	1.30
23928437--23928495	10	5.8	10	80	11	59	52	0	5	42	1.23
23930019--23930135	57	2.0	58	98	1	227	20	19	10	49	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145