genome.fa.s2.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  124  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41449411--41449471	30	2.0	31	87	3	88	27	24	18	29	1.98
41457909--41457967	20	3.0	20	68	9	57	32	10	32	25	1.89
41457826--41458171	40	8.7	40	84	0	415	36	17	27	17	1.93
41458029--41458171	20	7.2	20	66	6	83	34	20	28	16	1.94
41464463--41464546	36	2.4	36	93	2	143	38	3	0	58	1.16
41468545--41468595	15	3.4	15	72	8	50	33	5	1	58	1.33
41469259--41469296	20	1.9	20	88	0	58	73	10	0	15	1.09
41470604--41470682	27	2.9	27	75	7	88	22	25	12	39	1.89
41470835--41471038	45	4.5	45	89	0	309	22	21	12	44	1.85
41475009--41475062	16	3.4	16	80	10	56	55	3	24	16	1.57
41480673--41480739	34	2.0	34	87	0	98	29	4	22	43	1.73
41485141--41485289	27	5.5	26	78	10	115	34	14	24	26	1.93
41485164--41485289	54	2.3	54	80	12	127	35	14	25	24	1.93
41490741--41490861	50	2.4	50	83	0	143	28	23	27	20	1.99
41491392--41491436	22	2.0	22	83	8	56	15	26	20	37	1.92
41491547--41491749	42	4.8	42	87	1	282	21	21	22	34	1.97
41491880--41491920	19	2.2	19	86	8	57	68	2	2	26	1.15
41492067--41492137	21	3.4	21	88	0	106	4	46	18	30	1.68
41494186--41494250	12	5.5	12	75	10	62	38	1	10	49	1.47
41494184--41494255	36	2.0	36	86	5	101	37	1	12	48	1.50
41494233--41494275	21	2.0	21	86	8	61	34	0	16	48	1.46
41494204--41494273	12	6.1	12	75	18	51	35	1	14	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41495052--41495641	23	25.7	23	100	0	1180	38	0	17	43	1.49
41495626--41495657	16	2.0	16	100	0	64	31	0	25	43	1.55
41496951--41497002	14	3.4	14	76	23	59	36	19	13	30	1.90
41497471--41497753	148	1.9	148	85	1	388	36	22	16	23	1.94
41498224--41498256	16	2.1	16	88	5	50	33	0	6	60	1.21
41498298--41498340	15	2.8	15	78	3	50	46	32	0	20	1.51
41498431--41498483	21	2.5	20	79	8	52	45	32	3	18	1.68
41498616--41498672	20	2.8	20	81	7	71	47	36	0	15	1.46
41498833--41498906	21	3.7	21	77	14	93	37	44	2	14	1.60
41498828--41498906	38	2.1	37	92	2	131	39	41	2	16	1.62
41498873--41498933	21	2.9	21	79	16	63	40	39	1	18	1.60
41499143--41499377	117	2.0	114	86	4	328	26	28	20	25	1.99
41499274--41499521	73	3.4	73	85	1	311	25	27	22	24	2.00
41500877--41501002	62	2.1	57	84	7	153	50	5	3	41	1.42
41500937--41501011	36	2.1	35	83	11	91	54	4	2	38	1.33
41507233--41507281	19	2.9	16	77	16	62	38	18	12	30	1.87
41508048--41508109	15	4.1	15	72	4	52	38	37	3	20	1.69
41508049--41508107	31	1.9	30	86	3	82	40	33	3	22	1.70
41508899--41509829	229	4.1	230	80	4	942	27	22	19	30	1.98
41508899--41509832	115	8.2	114	78	5	908	27	22	19	30	1.98
41515737--41515792	27	2.1	26	90	3	85	17	32	21	28	1.96
41515743--41515801	27	2.2	27	84	0	73	15	28	27	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41515849--41515911	29	2.3	27	91	5	99	53	0	4	41	1.22
41517784--41517822	19	2.1	19	85	9	53	5	2	12	79	1.00
41517815--41517877	29	2.2	28	91	5	101	53	0	4	41	1.22
41521763--41521798	17	2.1	17	89	5	54	19	2	11	66	1.35
41521889--41521978	47	1.9	47	95	0	162	38	5	7	47	1.56
41522478--41522568	45	2.0	44	85	6	121	38	23	3	35	1.71
41522550--41522580	16	1.9	16	93	0	53	25	25	6	41	1.79
41522817--41522921	40	2.7	38	82	8	120	41	6	4	46	1.51
41524159--41524199	21	2.0	21	85	0	55	56	2	2	39	1.26
41524194--41524269	24	3.3	21	72	24	55	43	1	3	51	1.28
41524516--41524567	16	3.4	15	76	10	52	57	3	1	36	1.28
41529896--41529944	19	2.5	19	80	12	64	53	4	0	42	1.20
41530082--41530172	29	3.1	29	98	0	173	56	6	16	20	1.63
41531051--41531091	17	2.4	17	83	0	55	26	19	14	39	1.90
41531243--41531301	27	2.2	26	84	3	73	23	30	16	28	1.97
41531223--41531328	14	7.9	12	71	21	61	21	27	17	33	1.96
41531207--41531313	27	4.0	26	71	23	71	22	27	17	32	1.96
41533200--41533340	50	2.8	50	80	0	138	27	21	29	21	1.99
41540071--41540105	18	2.0	17	88	5	52	45	0	0	54	0.99
41540253--41540357	44	2.5	40	76	15	113	31	29	4	34	1.78
41540251--41540360	45	2.6	44	81	8	131	31	29	5	33	1.80
41540339--41540376	16	2.4	16	90	0	58	34	34	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41541333--41541398	27	2.5	26	85	11	89	21	24	18	36	1.95
41545133--41545201	34	2.0	35	97	2	131	8	2	28	59	1.42
41546167--41546502	137	2.4	138	89	2	498	38	9	7	44	1.64
41549601--41549638	19	2.0	19	85	10	51	21	42	0	36	1.53
41555885--41555968	43	2.0	43	95	0	150	50	10	20	19	1.77
41559918--41559974	23	2.4	25	80	14	66	26	5	12	56	1.57
41562108--41562145	19	2.0	19	85	10	51	21	39	0	39	1.53
41565658--41565740	43	1.9	43	95	0	148	31	22	21	24	1.98
41583891--41583921	5	6.4	5	92	7	55	0	0	16	83	0.64
41585146--41585288	27	5.3	27	81	9	109	38	19	20	21	1.94
41585169--41585339	54	3.2	53	86	3	209	35	18	22	23	1.96
41585146--41585354	81	2.6	81	80	9	230	36	19	20	23	1.95
41585196--41585339	27	5.3	27	88	5	193	34	17	23	25	1.96
41585361--41585427	23	2.8	24	81	2	82	23	4	22	49	1.68
41585361--41585443	24	3.5	23	80	1	85	25	4	21	48	1.70
41585506--41585571	27	2.5	27	79	13	75	24	24	18	33	1.97
41585559--41585624	26	2.5	26	85	0	78	18	21	27	33	1.96
41585615--41585817	32	6.4	32	83	2	248	19	21	21	37	1.94
41585615--41585817	96	2.1	95	91	0	325	19	21	21	37	1.94
41585809--41585855	22	2.1	22	84	0	58	19	17	17	46	1.84
41587941--41587975	3	11.7	3	93	0	61	0	0	28	71	0.86
41593902--41594018	28	4.2	28	81	1	128	33	22	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41594374--41594471	27	3.6	27	76	4	83	23	15	22	38	1.92
41601066--41601294	114	2.0	115	99	0	451	42	18	12	26	1.85
41603602--41603723	23	5.3	23	78	3	147	32	24	20	22	1.98
41603602--41603723	46	2.7	46	86	0	172	32	24	20	22	1.98
41604993--41605031	18	2.2	17	86	13	53	46	20	0	33	1.51
41614097--41614237	39	3.6	39	92	3	230	44	19	4	31	1.70
41620770--41621104	51	6.6	50	80	3	341	29	25	15	28	1.96
41620764--41621104	102	3.4	101	87	2	445	29	25	15	29	1.96
41623618--41623726	50	2.2	51	91	3	184	25	24	5	44	1.75
41634954--41635499	275	2.0	275	94	0	950	33	23	17	25	1.96
41651747--41652022	68	4.1	68	87	2	362	38	18	20	23	1.94
41652088--41652120	11	3.1	11	91	4	50	12	0	9	78	0.95
41652088--41652129	21	2.0	21	86	13	61	11	0	9	78	0.96
41652903--41653153	118	2.1	118	100	0	502	32	13	31	22	1.93
41657811--41657863	20	2.8	20	85	5	65	54	3	1	39	1.29
41657878--41657915	18	2.1	19	90	5	60	55	0	0	44	0.99
41658231--41658270	21	1.9	21	90	10	64	55	12	10	22	1.67
41658426--41658477	26	2.0	26	100	0	104	26	11	15	46	1.80
41660853--41660912	28	2.1	28	90	6	95	38	3	8	50	1.49
41675105--41675168	27	2.4	27	81	5	76	20	20	18	40	1.91
41683860--41683955	25	3.8	25	76	4	95	30	20	21	27	1.98
41687036--41687136	52	1.9	52	89	0	157	27	18	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41696542--41696577	18	2.1	18	89	5	56	52	0	25	22	1.47
41700209--41700262	24	2.3	23	78	9	63	18	12	18	50	1.78
41700257--41700328	20	3.5	20	72	7	63	12	20	23	43	1.86
41700244--41700357	42	2.7	42	86	6	158	15	17	21	45	1.85
41700244--41700372	42	3.0	41	84	3	141	16	17	20	45	1.85
41714247--41714302	28	2.0	28	82	6	69	46	1	5	46	1.36
41715191--41715307	41	2.8	43	80	3	139	26	18	26	28	1.98
41715529--41715752	43	5.2	42	87	4	279	25	24	19	30	1.98
41715515--41715752	86	2.7	87	85	5	311	25	23	18	31	1.98
41715529--41715799	86	3.1	85	78	8	255	25	24	18	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145