genome.fa.s2.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  118  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39395218--39395270	27	2.0	27	88	0	79	43	13	15	28	1.84
39396175--39396199	12	2.1	12	100	0	50	52	0	24	24	1.48
39396712--39396752	21	2.0	21	90	0	64	53	2	14	29	1.54
39398241--39398277	14	2.6	14	95	0	65	40	0	40	18	1.51
39399810--39399990	75	2.4	75	93	5	303	25	7	2	64	1.31
39404337--39404404	20	3.3	20	81	2	73	36	10	8	44	1.70
39406491--39406544	19	2.8	20	88	2	74	29	11	12	46	1.77
39412860--39413291	215	2.0	216	99	0	857	39	10	8	41	1.70
39415010--39415064	18	3.1	18	79	10	69	52	0	3	43	1.18
39415010--39415067	21	3.1	21	70	25	58	53	0	3	43	1.17
39416186--39416309	50	2.5	49	84	3	151	32	12	11	44	1.77
39416203--39416328	50	2.5	50	84	2	146	34	12	11	42	1.79
39417960--39417992	16	2.0	17	88	5	50	30	0	3	66	1.06
39417973--39418005	12	2.8	12	86	13	50	42	0	0	57	0.98
39427179--39427218	21	1.9	21	85	10	55	67	0	2	30	1.04
39434017--39434058	22	1.9	22	85	9	59	35	16	7	40	1.76
39438485--39438630	73	2.0	73	98	0	283	32	23	12	30	1.92
39446578--39446631	24	2.2	24	100	0	108	50	7	14	27	1.70
39452944--39452976	12	2.8	12	95	0	57	42	42	12	3	1.57
39459004--39459113	57	1.9	57	98	0	211	38	18	16	27	1.92
39459789--39460839	131	8.0	131	96	0	1760	29	16	25	29	1.96
39459790--39460843	44	24.1	45	74	7	776	29	16	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39468986--39469058	27	2.7	27	95	2	128	35	20	8	35	1.83
39471807--39471894	46	1.9	46	97	0	167	22	21	15	39	1.91
39483018--39483258	50	4.8	50	80	1	234	23	28	21	26	1.99
39483483--39483587	52	2.0	52	85	3	140	17	28	11	42	1.83
39486611--39486722	41	2.8	41	83	1	154	34	14	28	22	1.93
39493401--39493452	27	1.9	27	92	0	86	30	15	3	50	1.62
39496740--39496772	12	2.8	12	90	9	50	36	9	9	45	1.68
39496917--39496991	31	2.4	31	82	4	80	20	32	26	21	1.97
39502178--39502240	30	2.1	30	100	0	126	38	14	12	34	1.84
39510097--39510128	17	1.9	16	93	6	55	81	6	9	3	0.97
39510206--39510413	94	2.2	92	93	5	362	64	3	12	18	1.42
39518992--39519290	27	11.1	27	81	2	251	40	21	18	19	1.91
39519013--39519290	81	3.4	81	81	1	297	41	20	19	18	1.91
39518992--39519290	54	5.5	54	84	1	303	40	21	18	19	1.91
39522061--39522314	43	6.0	42	75	6	226	35	24	16	22	1.95
39522025--39522307	85	3.3	85	93	0	451	34	25	16	24	1.95
39522031--39522307	43	6.5	41	75	8	207	35	25	15	23	1.94
39522023--39522340	42	7.5	43	72	10	235	35	24	16	23	1.95
39522555--39522594	17	2.2	18	91	8	64	37	22	15	25	1.93
39525246--39525276	12	2.6	12	100	0	62	6	16	45	32	1.72
39525605--39525911	27	11.4	27	82	1	224	33	18	19	28	1.95
39525605--39525911	54	5.7	54	79	3	251	33	18	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39525849--39525936	27	3.3	27	85	1	88	35	17	20	27	1.94
39525930--39526024	24	4.0	24	78	5	111	27	5	23	44	1.74
39525929--39526062	24	5.6	24	76	3	108	23	5	24	46	1.73
39525938--39526062	48	2.6	48	78	7	130	22	5	25	46	1.73
39526206--39526268	32	2.0	32	90	0	99	23	22	17	36	1.95
39527419--39527475	27	2.1	27	86	0	78	28	5	14	52	1.62
39532521--39532654	50	2.7	49	92	1	223	29	26	16	28	1.97
39532516--39532856	51	6.8	50	74	10	194	30	27	14	26	1.95
39532516--39532857	102	3.4	102	83	9	382	30	27	15	26	1.96
39532516--39532856	153	2.3	150	78	6	366	30	27	14	26	1.95
39539042--39539485	51	8.8	51	76	7	354	29	27	15	27	1.96
39539042--39539485	102	4.4	101	84	6	508	29	27	15	27	1.96
39547961--39548122	74	2.2	76	83	8	199	45	13	7	33	1.72
39548060--39548258	86	2.3	85	76	6	204	40	13	11	34	1.80
39548211--39548603	79	5.0	79	84	6	440	38	12	15	33	1.85
39548187--39548654	158	3.0	158	81	6	536	38	12	16	32	1.86
39548231--39548659	237	1.8	239	86	4	625	37	13	16	33	1.87
39548641--39548811	90	1.9	89	82	5	211	40	11	15	32	1.82
39550922--39551021	33	3.0	33	88	0	146	29	21	20	30	1.98
39560286--39560324	19	2.0	21	90	10	64	56	2	5	35	1.35
39560687--39560881	101	1.9	101	95	1	356	42	7	8	42	1.62
39562274--39562634	131	2.8	131	90	0	553	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39562280--39563105	44	19.1	43	66	14	283	25	23	19	31	1.98
39562497--39562980	172	2.8	172	93	0	824	25	23	20	30	1.98
39562852--39563108	128	2.0	128	95	0	460	25	24	19	30	1.98
39562469--39563105	172	3.7	170	83	5	667	25	23	20	30	1.98
39567423--39567529	33	3.4	32	81	9	125	31	27	23	17	1.97
39567450--39567636	102	1.8	102	90	0	302	31	26	20	21	1.98
39580855--39580900	24	1.9	24	90	0	74	32	19	21	26	1.97
39581095--39581127	16	2.0	17	94	5	59	42	6	18	33	1.75
39588500--39588558	25	2.4	24	81	18	68	23	22	20	33	1.97
39593237--39593262	12	2.2	12	100	0	52	30	15	7	46	1.74
39595743--39595791	24	2.0	24	100	0	98	55	8	12	24	1.64
39596106--39596195	28	3.2	28	90	0	135	23	21	24	31	1.98
39596106--39596228	56	2.1	56	80	7	129	24	21	22	30	1.99
39597430--39597542	28	4.0	28	91	2	174	22	21	23	32	1.98
39600761--39600802	22	2.0	21	90	4	66	30	4	33	30	1.78
39602672--39602708	15	2.5	15	90	0	56	40	2	18	37	1.65
39612579--39612634	12	4.6	12	86	2	76	39	23	0	37	1.55
39612801--39612867	23	3.0	23	93	2	109	32	22	23	20	1.98
39620060--39620102	12	3.6	12	84	9	61	39	23	0	37	1.55
39620272--39620332	23	2.7	23	92	2	97	32	22	24	19	1.97
39621327--39621366	10	4.2	9	84	9	53	15	12	0	72	1.12
39621330--39621371	10	4.3	10	80	17	52	16	9	0	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39623772--39623913	43	3.6	42	73	17	149	30	28	19	21	1.97
39623780--39623950	75	2.3	76	89	1	254	30	29	17	21	1.96
39623850--39624052	102	2.0	102	91	1	327	31	28	19	21	1.97
39636854--39636914	16	3.8	16	75	12	61	45	18	14	21	1.84
39643587--39643654	34	2.0	34	85	5	93	29	23	26	20	1.99
39644256--39644324	31	2.2	31	94	0	120	36	24	4	34	1.76
39653330--39653477	27	5.5	27	84	6	185	42	18	19	19	1.89
39653330--39653458	54	2.4	54	92	0	204	43	18	18	19	1.88
39653805--39653894	28	3.1	28	82	7	108	26	23	22	27	1.99
39653809--39653893	30	2.9	30	85	3	120	27	23	22	27	1.99
39653869--39653935	33	2.0	34	85	8	93	28	26	20	23	1.99
39657810--39657862	13	4.1	13	82	0	70	28	7	26	37	1.83
39665430--39665467	20	1.9	20	94	0	67	13	10	2	73	1.19
39665462--39665501	19	2.1	19	85	0	53	30	7	2	60	1.38
39668197--39668221	2	12.5	2	100	0	50	52	0	48	0	1.00
39672046--39673848	620	2.9	616	92	2	2979	37	11	12	38	1.80
39680682--39680845	33	5.0	33	82	4	197	32	21	18	28	1.96
39680711--39680845	66	2.0	66	92	2	227	31	21	17	28	1.96
39686297--39686330	18	1.9	18	88	5	52	17	26	41	14	1.88
39686768--39686848	40	2.0	41	85	7	112	24	20	25	28	1.99
39694015--39694052	19	2.0	20	94	5	69	55	7	15	21	1.66
39699020--39699102	27	3.1	27	81	6	89	50	15	8	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39711885--39711924	19	2.0	21	85	9	57	57	0	22	20	1.41
39722475--39722555	40	2.0	40	100	0	162	35	22	2	39	1.67
39724420--39724467	25	1.9	25	82	0	60	35	16	12	35	1.87
39728735--39728759	5	5.0	5	100	0	50	40	0	0	60	0.97
39738978--39739294	158	2.0	158	96	0	589	40	20	5	33	1.77
39746576--39746624	6	8.7	6	83	16	61	30	0	2	67	1.02
39746576--39746624	11	4.3	12	82	17	61	30	0	2	67	1.02
39747400--39747453	28	1.9	28	100	0	108	31	14	11	42	1.81
39748077--39748116	15	2.5	17	88	11	59	75	2	12	10	1.15
39757984--39758064	26	3.1	25	83	3	72	34	20	19	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145