genome.fa.s2.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  57  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18483095--18483342	131	1.9	131	86	1	354	38	16	15	29	1.89
18493521--18493561	12	3.3	12	86	6	55	56	7	7	29	1.54
18493521--18493562	13	3.3	13	80	6	50	57	7	7	28	1.52
18506302--18506694	194	2.0	194	88	2	576	46	12	6	33	1.68
18506746--18506821	27	2.8	26	74	16	75	65	1	0	32	1.01
18506661--18506821	59	2.9	54	77	14	177	60	3	2	32	1.27
18506805--18506845	6	7.0	6	88	2	57	56	0	0	43	0.99
18513259--18513321	16	3.6	16	73	22	63	11	20	33	34	1.88
18513254--18513357	38	2.7	39	87	1	147	13	19	30	36	1.90
18513266--18513357	39	2.4	38	87	1	121	14	19	30	35	1.91
18519044--18519083	21	2.0	21	90	5	64	35	22	15	27	1.94
18519183--18519214	15	2.1	15	100	0	64	50	0	0	50	1.00
18519622--18519677	21	2.6	22	80	8	71	53	0	0	46	1.00
18519622--18519674	11	4.8	12	77	15	53	52	0	0	47	1.00
18525261--18525345	30	2.8	31	81	10	95	62	1	2	34	1.16
18525279--18525326	21	2.3	20	85	3	60	60	0	4	35	1.16
18525267--18525344	32	2.6	30	80	8	86	64	1	2	32	1.15
18537607--18537744	19	7.2	19	70	15	79	28	5	2	63	1.29
18537623--18537744	39	3.2	37	77	10	120	29	4	2	63	1.28
18537646--18537785	19	7.3	19	72	13	90	32	2	2	62	1.21
18537586--18537745	78	2.1	77	82	3	196	29	5	2	63	1.29
18541678--18542109	136	3.2	136	92	3	664	30	13	29	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18557216--18557370	44	3.5	44	85	3	213	23	13	21	40	1.89
18559940--18560009	21	3.3	22	78	6	81	30	14	25	30	1.95
18566311--18566414	25	4.4	24	72	12	99	40	0	16	42	1.54
18568029--18568059	12	2.6	12	100	0	62	19	35	38	6	1.77
18573337--18573361	12	2.1	12	100	0	50	44	0	8	48	1.32
18575782--18575850	21	3.3	21	87	2	95	56	8	23	11	1.62
18582334--18582391	19	3.2	19	64	14	50	18	13	6	60	1.55
18582333--18582410	35	2.2	35	93	0	129	20	14	7	57	1.61
18582336--18582425	35	2.6	35	87	3	110	23	14	7	54	1.66
18589573--18589601	14	2.1	14	100	0	58	27	13	6	51	1.66
18595061--18595098	18	2.1	18	100	0	76	10	15	5	68	1.36
18597869--18597896	13	2.2	13	100	0	56	53	0	14	32	1.41
18597998--18598045	23	2.3	20	78	21	62	31	16	6	45	1.72
18598004--18598048	23	2.0	23	100	0	90	31	13	6	48	1.68
18598085--18598119	14	2.7	13	87	12	54	42	0	2	54	1.15
18600909--18600950	18	2.3	18	84	8	50	54	19	4	21	1.62
18607071--18607122	23	2.2	25	82	6	63	50	3	0	46	1.20
18607119--18607156	17	2.4	15	91	8	58	71	2	0	26	1.00
18612178--18612243	35	1.9	34	81	3	78	65	7	1	25	1.28
18615494--18615564	31	2.3	31	90	2	108	47	0	25	26	1.52
18615609--18615688	29	2.8	29	90	7	135	40	0	38	21	1.53
18623367--18625354	993	2.0	993	100	0	3976	35	11	15	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18627188--18627271	42	2.0	42	100	0	168	38	11	11	38	1.79
18627936--18627984	20	2.5	20	81	15	66	12	24	6	57	1.58
18628187--18628372	50	3.7	50	81	3	189	22	27	22	27	1.99
18632193--18632230	18	2.1	18	85	9	51	44	10	7	36	1.68
18632800--18632863	25	2.6	25	81	16	80	25	23	17	34	1.96
18633685--18633723	20	1.9	21	89	5	62	30	5	23	41	1.76
18634648--18634724	38	2.0	38	97	0	145	27	18	9	45	1.79
18640569--18640601	16	2.0	17	88	5	50	57	9	3	30	1.45
18641924--18642147	43	5.2	43	90	1	324	25	31	16	26	1.97
18641924--18642147	85	2.6	86	88	0	315	25	31	16	26	1.97
18642244--18642272	14	2.1	14	100	0	58	51	0	0	48	1.00
18642448--18642538	43	2.1	43	85	2	121	42	9	10	36	1.73
18648132--18648374	83	2.9	81	83	6	272	30	14	14	41	1.85
18648499--18648526	14	2.0	14	100	0	56	50	0	0	50	1.00
18649444--18649811	41	9.0	41	87	0	520	27	29	23	19	1.98
18651780--18651821	21	2.0	21	100	0	84	19	33	14	33	1.91
18654902--18656339	715	2.0	717	97	0	2727	43	21	15	19	1.88
18665769--18665823	30	2.0	27	82	13	67	34	0	47	18	1.49
18667944--18668006	26	2.5	25	80	7	74	23	15	12	47	1.80
18669116--18669151	15	2.3	17	86	13	51	22	16	5	55	1.62
18670015--18670041	8	3.4	8	100	0	54	77	0	0	22	0.76
18671615--18671788	68	2.6	68	94	0	303	43	6	15	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18674817--18674878	22	2.8	21	75	4	52	45	16	19	19	1.86
18674870--18674977	32	3.4	32	83	1	128	37	19	20	22	1.94
18674978--18675031	26	2.1	26	85	0	72	38	25	18	16	1.92
18675019--18675075	27	2.1	27	84	12	73	31	24	24	19	1.98
18675147--18675207	24	2.5	24	86	0	86	49	19	9	21	1.77
18675386--18675850	27	17.3	27	85	5	423	24	16	18	39	1.91
18675405--18675850	54	8.3	54	85	5	505	24	16	18	40	1.91
18675386--18675850	81	5.8	81	80	8	472	24	16	18	39	1.91
18681691--18681724	11	3.2	11	87	4	52	82	11	0	5	0.83
18682612--18682650	6	6.0	6	85	14	51	66	0	17	15	1.25
18682612--18682660	7	7.3	7	82	15	59	65	0	18	16	1.28
18682612--18682660	20	2.5	19	86	6	62	65	0	18	16	1.28
18682612--18682651	13	3.0	13	96	3	71	67	0	17	15	1.23
18683874--18684010	43	3.2	43	64	17	111	28	26	22	22	1.99
18683869--18684347	88	5.5	87	86	2	609	27	24	25	22	2.00
18684478--18684615	73	1.9	74	95	1	251	23	21	24	31	1.98
18684634--18684843	50	4.2	50	73	3	188	36	22	16	24	1.94
18684625--18684810	100	1.9	101	90	1	302	36	22	18	23	1.95
18684625--18684843	100	2.2	100	84	4	271	36	22	17	23	1.95
18695502--18695549	13	3.8	13	83	5	62	25	4	0	70	1.04
18698502--18698535	6	5.7	6	96	0	59	0	14	11	73	1.10
18718179--18718219	4	10.5	4	80	15	50	78	0	2	19	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18718179--18718219	13	3.5	12	80	16	50	78	0	2	19	0.87
18719816--18719865	13	3.6	14	78	8	50	40	0	2	58	1.10
18719823--18719860	13	2.9	13	84	0	58	36	0	0	63	0.95
18722046--18722157	32	3.5	32	81	7	129	38	8	7	45	1.63
18727941--18727984	19	2.4	19	85	7	56	36	9	13	40	1.76
18729180--18729340	79	2.0	79	97	0	304	39	12	16	32	1.85
18732672--18732696	13	1.9	13	100	0	50	64	28	8	0	1.22
18734224--18734272	22	2.2	22	96	0	89	12	28	18	40	1.86
18735477--18735574	46	2.1	46	88	3	144	14	3	37	44	1.60
18735842--18735914	30	2.4	30	83	0	101	23	28	26	21	1.99
18748569--18748660	46	2.0	46	97	0	175	41	27	8	22	1.83
18753061--18753087	10	2.7	10	100	0	54	22	0	22	55	1.44
18773798--18773857	5	12.0	5	100	0	120	40	0	0	60	0.97
18776337--18776373	19	2.0	19	94	5	67	32	21	8	37	1.83
18778244--18778273	14	2.1	14	93	0	51	73	0	16	10	1.09
18778600--18778643	19	2.3	20	92	7	74	13	4	6	75	1.17
18779021--18779195	7	24.6	7	74	12	88	42	34	0	21	1.57
18779339--18779393	14	3.9	14	76	4	56	45	34	0	20	1.51
18779339--18779412	21	3.5	21	77	5	69	47	29	0	22	1.52
18779413--18779956	40	14.0	39	68	12	235	26	22	20	30	1.98
18779573--18779956	80	4.8	80	71	6	278	27	22	20	29	1.99
18790167--18790211	6	7.5	6	82	9	56	80	0	2	17	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18799714--18799812	41	2.4	41	84	3	128	21	25	7	46	1.76
18801769--18801798	14	2.1	14	100	0	60	33	13	16	36	1.88
18801970--18802051	29	2.7	30	84	5	103	46	14	8	30	1.75
18807607--18807641	3	11.7	3	100	0	70	68	0	0	31	0.90
18807789--18807841	21	2.5	21	84	0	70	30	7	32	30	1.85
18812338--18812388	9	5.7	9	85	0	66	31	11	19	37	1.88
18812338--18812388	18	2.8	18	96	0	93	31	11	19	37	1.88
18812552--18812594	18	2.4	18	96	0	77	23	46	0	30	1.52
18829969--18830028	30	2.0	30	83	3	75	41	0	38	20	1.52
18830243--18830270	9	3.1	9	100	0	56	32	10	10	46	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145