genome.fa.s2.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  79  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26271474--26271515	21	2.0	20	86	4	57	23	21	23	30	1.99
26274130--26274164	13	2.7	13	90	0	52	17	14	40	28	1.88
26278137--26278742	186	3.3	185	88	3	884	23	26	7	41	1.81
26278521--26278560	20	1.9	22	85	10	57	22	32	2	42	1.67
26279058--26279086	14	2.0	15	93	6	51	55	0	44	0	0.99
26282646--26282778	61	2.2	58	84	6	169	45	2	3	49	1.30
26288196--26288311	61	2.0	60	86	5	164	43	2	5	49	1.38
26290947--26291096	50	2.9	51	78	12	162	34	13	22	30	1.92
26291222--26291558	60	5.6	60	82	2	354	32	13	24	29	1.94
26291369--26291467	31	3.3	31	66	25	84	27	16	26	30	1.96
26291226--26291558	180	1.9	180	84	2	454	32	13	25	28	1.94
26293270--26293658	146	2.7	146	82	2	399	29	15	29	25	1.96
26293852--26293929	27	2.9	28	75	12	72	32	17	29	20	1.96
26297859--26297907	3	16.3	3	100	0	98	32	0	0	67	0.91
26298480--26298512	2	16.5	2	100	0	66	51	0	0	48	1.00
26310150--26310195	14	2.9	16	78	12	51	67	8	0	23	1.18
26311141--26311212	37	1.9	37	85	0	99	19	15	27	37	1.92
26313000--26313048	23	2.2	22	85	7	64	34	20	26	18	1.95
26332566--26332791	50	4.6	49	81	7	170	23	29	19	27	1.98
26332596--26332838	50	4.7	50	83	4	254	24	29	20	25	1.99
26344821--26344877	28	2.0	28	82	0	69	19	29	15	35	1.93
26344859--26344947	33	2.7	33	84	6	110	22	23	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26346462--26346495	16	2.1	16	94	0	59	26	0	0	73	0.83
26354129--26354500	33	11.2	33	81	2	273	47	16	20	14	1.82
26354124--26354503	66	5.7	66	79	2	359	47	16	20	14	1.82
26354145--26354515	99	3.7	99	83	1	393	48	17	19	14	1.80
26358368--26358413	24	1.9	24	82	8	58	43	2	2	52	1.25
26367378--26367415	19	2.1	19	85	5	51	71	0	0	28	0.87
26368101--26368134	17	1.9	18	88	5	52	29	0	0	70	0.87
26369522--26369577	21	2.7	21	85	0	76	33	7	30	28	1.84
26369541--26369585	21	2.1	21	83	0	54	42	8	24	24	1.83
26371699--26371742	22	2.0	22	86	8	63	56	2	9	31	1.43
26371822--26371851	7	4.3	7	91	0	51	70	0	3	26	1.03
26372051--26372107	22	2.6	23	78	18	75	64	3	7	24	1.34
26372819--26372843	13	1.9	13	100	0	50	68	0	8	24	1.16
26390243--26390308	30	2.2	30	97	0	123	24	28	3	43	1.69
26391675--26391718	23	2.0	22	90	4	70	34	27	13	25	1.93
26393188--26393346	85	1.9	84	84	3	212	31	23	18	26	1.97
26393187--26393341	43	3.6	42	84	6	188	31	25	18	24	1.98
26399369--26399405	18	2.1	18	90	5	58	40	2	2	54	1.29
26399523--26399620	44	2.2	45	88	1	144	36	28	4	30	1.76
26399599--26400068	16	29.4	16	93	0	796	22	37	3	37	1.70
26399599--26400068	32	14.7	32	99	0	931	22	37	3	37	1.70
26401832--26402065	7	32.9	7	70	13	84	43	34	0	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26402377--26402479	40	2.6	40	82	0	125	28	21	20	30	1.98
26402559--26402638	40	2.0	40	87	0	115	26	23	22	27	2.00
26402367--26402792	155	2.8	155	84	0	557	27	21	19	31	1.98
26402688--26402872	40	4.6	40	86	0	253	27	22	20	29	1.98
26402688--26402872	80	2.3	80	89	0	280	27	22	20	29	1.98
26405725--26405765	7	6.0	7	82	5	57	43	2	0	53	1.13
26407279--26407313	14	2.5	14	90	0	52	31	40	0	28	1.57
26409508--26409558	21	2.4	21	74	6	50	54	7	3	33	1.47
26409923--26410647	365	2.0	368	88	1	1087	37	12	15	35	1.85
26415050--26415088	17	2.4	16	84	16	53	48	5	10	35	1.59
26436286--26436402	62	1.9	62	82	5	150	41	4	4	50	1.41
26438561--26438676	43	2.7	43	83	2	144	41	22	13	22	1.89
26445852--26446034	88	2.1	88	95	1	332	22	13	20	43	1.87
26455987--26456015	12	2.3	13	94	5	51	0	24	0	75	0.80
26456980--26457029	23	2.2	23	85	7	66	64	12	2	22	1.37
26457525--26457876	175	2.0	177	98	1	690	49	19	11	19	1.78
26459166--26459218	25	2.1	25	96	0	97	28	0	11	60	1.31
26468704--26468757	20	2.7	20	94	0	90	55	1	22	20	1.53
26478313--26478374	30	2.1	30	87	6	90	48	11	8	32	1.68
26481254--26481295	21	2.0	20	82	13	50	50	9	7	33	1.62
26481867--26481893	14	1.9	14	100	0	54	14	25	22	37	1.93
26485045--26485503	27	17.0	27	85	0	551	18	17	22	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26496693--26496788	40	2.4	40	81	10	117	21	17	27	33	1.96
26499521--26499570	19	2.6	19	90	0	82	16	34	28	22	1.95
26501281--26501324	22	2.0	23	86	4	63	29	0	15	54	1.42
26501281--26501324	12	3.8	12	82	11	56	29	0	15	54	1.42
26502690--26502725	14	2.5	15	90	4	56	66	0	8	25	1.19
26502693--26502725	15	2.2	16	84	15	52	63	0	9	27	1.24
26503293--26503328	6	6.0	6	100	0	72	16	0	0	83	0.65
26505481--26505518	12	3.2	12	92	7	60	26	42	28	2	1.69
26512981--26513076	33	2.9	33	88	0	138	35	22	19	21	1.96
26513260--26513319	27	2.2	28	85	11	81	38	21	21	18	1.94
26513504--26513748	26	9.4	26	86	1	312	23	16	21	38	1.92
26525013--26525054	18	2.3	18	95	0	75	9	21	21	47	1.79
26526991--26527114	50	2.5	50	81	0	140	20	26	24	28	1.99
26530908--26530944	18	2.0	19	85	15	51	43	5	18	32	1.73
26531765--26531844	39	2.1	39	100	0	160	43	7	10	38	1.66
26532804--26532836	16	2.0	17	88	5	50	27	3	18	51	1.60
26533590--26533654	31	2.1	31	100	0	130	53	6	6	33	1.50
26542467--26542504	20	1.9	20	84	10	51	52	28	0	18	1.45
26542639--26542893	126	2.0	127	99	0	503	35	23	3	36	1.74
26543777--26543839	3	21.0	3	96	0	117	66	31	0	1	1.01
26549322--26549443	44	2.8	44	73	12	124	31	25	16	27	1.96
26552752--26553166	138	3.0	138	95	0	722	32	25	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26556558--26556707	3	50.0	3	100	0	300	66	33	0	0	0.92
26560661--26560767	44	2.4	44	81	6	119	30	26	16	26	1.97
26562306--26563029	359	2.0	358	92	1	1189	32	24	19	23	1.97
26564169--26564253	25	3.4	25	78	3	91	24	20	23	31	1.98
26564679--26564710	16	1.9	17	93	6	57	37	9	6	46	1.61
26581331--26581403	22	3.4	21	73	7	67	35	13	24	26	1.93
26581315--26581422	42	2.6	42	86	0	153	31	16	25	26	1.97
26581315--26581422	20	5.2	21	70	8	87	31	16	25	26	1.97
26584599--26584720	29	4.2	29	78	1	109	35	15	25	23	1.94
26593058--26593110	20	2.7	19	85	8	70	45	16	11	26	1.82
26594934--26594973	20	2.0	21	95	5	73	47	15	10	27	1.77
26601751--26601802	25	2.2	23	86	13	70	63	0	11	25	1.28
26601782--26601824	14	3.0	14	75	3	50	55	0	13	30	1.39
26601749--26601824	29	2.8	28	80	15	104	59	0	11	28	1.33
26604183--26604234	25	2.2	23	86	13	70	63	0	11	25	1.28
26604214--26604256	14	3.0	14	75	3	50	55	0	13	30	1.39
26604181--26604256	29	2.8	28	80	15	104	59	0	11	28	1.33
26608650--26608721	27	2.7	27	84	4	92	29	19	27	23	1.98
26612602--26612674	27	2.7	27	74	6	76	27	36	19	16	1.93
26613652--26613694	17	2.6	16	82	10	50	65	2	2	30	1.18
26631531--26631589	28	2.1	28	90	0	91	15	16	33	33	1.91
26631569--26631770	103	2.0	103	94	0	359	25	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26633276--26633315	19	2.1	19	90	9	64	35	7	2	55	1.42
26633399--26633440	16	2.6	16	84	0	57	35	0	0	64	0.94
26633366--26633518	78	2.0	76	93	2	261	31	3	7	57	1.43
26640196--26640240	16	2.8	16	96	0	81	8	26	37	26	1.86
26640219--26640424	38	5.4	38	84	0	241	15	20	29	34	1.93
26640769--26640831	31	2.0	31	100	0	126	46	6	22	25	1.75
26647214--26647267	27	2.0	27	100	0	108	48	22	7	22	1.75
26647615--26647652	15	2.4	17	78	17	53	36	0	2	60	1.11
26647624--26647654	15	2.1	15	100	0	62	25	0	6	67	1.14
26649405--26649451	24	2.0	24	91	0	76	53	10	10	25	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145