genome.fa.s2.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  48  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15514400--15514435	17	2.1	17	100	0	72	11	0	5	83	0.80
15518953--15519042	38	2.5	36	84	10	121	52	1	7	38	1.38
15518953--15519042	36	2.5	34	86	10	126	52	1	7	38	1.38
15520718--15520809	25	3.7	25	79	2	87	20	23	20	34	1.96
15526025--15526052	10	2.8	10	100	0	56	53	0	28	17	1.44
15526080--15526107	2	14.0	2	100	0	56	50	0	0	50	1.00
15527803--15528093	142	2.0	142	88	2	431	33	19	22	24	1.97
15534317--15534377	3	20.3	3	96	0	113	63	0	36	0	0.94
15534462--15534522	25	2.4	25	81	13	72	18	0	11	70	1.16
15534603--15534814	76	2.7	77	76	10	216	34	4	10	49	1.59
15538902--15539012	58	1.9	58	94	0	195	34	17	25	23	1.96
15550999--15551195	32	6.2	32	81	2	200	39	18	18	23	1.93
15551204--15551257	26	2.1	26	92	0	90	35	25	22	16	1.95
15551210--15551309	27	3.8	26	81	6	94	34	24	24	18	1.96
15551373--15551506	24	5.6	24	83	0	151	44	19	8	27	1.79
15551524--15551749	27	8.5	26	87	2	281	23	23	18	34	1.96
15551741--15551800	26	2.3	27	88	2	86	23	16	16	43	1.87
15552161--15552266	53	2.0	53	92	0	176	19	26	20	33	1.97
15556965--15557025	31	2.0	31	83	6	79	29	32	14	22	1.94
15560576--15560607	15	2.1	15	94	0	55	15	6	9	68	1.36
15567448--15567504	30	1.9	30	82	3	71	43	12	10	33	1.76
15570597--15570635	19	2.1	19	95	0	69	0	46	10	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15573912--15573944	16	2.1	16	94	0	57	30	36	0	33	1.58
15589824--15589876	21	2.5	21	75	6	54	26	3	5	64	1.33
15589954--15589978	13	1.9	13	100	0	50	56	0	4	40	1.18
15593238--15593434	54	3.6	54	97	1	369	25	20	23	29	1.99
15604483--15604549	31	2.3	28	79	7	80	29	1	0	68	0.98
15606140--15606205	13	5.5	13	72	20	63	34	1	15	48	1.54
15606138--15606207	23	3.0	23	91	0	104	35	1	15	47	1.55
15610961--15611012	2	26.0	2	94	0	86	51	46	1	0	1.12
15611364--15612392	514	2.0	515	99	0	2042	38	19	16	25	1.92
15613108--15613162	18	3.1	17	77	10	56	63	1	1	32	1.15
15625847--15625873	13	2.1	13	100	0	54	70	0	14	14	1.17
15625842--15625882	7	5.7	7	86	13	57	73	0	14	12	1.11
15625841--15625882	15	2.9	15	82	17	61	73	0	14	11	1.09
15627260--15627557	44	6.8	43	74	8	201	29	18	23	28	1.98
15642340--15642746	44	8.8	44	70	16	225	33	18	19	28	1.96
15642369--15642797	142	3.0	142	93	0	725	34	17	19	27	1.95
15642862--15643313	101	4.5	102	92	2	729	33	22	19	24	1.97
15642862--15643313	50	9.0	50	72	3	352	33	22	19	24	1.97
15644024--15644066	22	2.0	21	82	13	52	9	13	4	72	1.26
15650213--15650286	38	1.9	38	97	0	139	25	24	17	32	1.97
15654376--15654858	251	1.9	251	88	1	727	29	9	29	31	1.89
15657006--15657040	13	2.6	14	86	9	54	34	0	31	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15662243--15662300	26	2.2	26	78	0	62	27	5	12	55	1.58
15665057--15665134	38	2.1	38	92	4	131	33	11	17	37	1.86
15669593--15669878	155	1.8	155	83	1	376	40	11	9	38	1.74
15678279--15678520	50	4.7	50	78	4	200	28	20	26	24	1.99
15680525--15680608	39	2.2	39	97	0	159	25	7	27	40	1.81
15682103--15682182	29	2.7	29	72	12	83	32	7	1	58	1.34
15682348--15682392	7	6.4	7	92	0	72	33	8	0	57	1.30
15682348--15682392	14	3.2	14	96	0	81	33	8	0	57	1.30
15687657--15687867	17	12.5	17	81	2	201	45	22	8	23	1.79
15689505--15689677	89	1.9	89	94	0	301	28	23	12	35	1.91
15691035--15691176	74	1.9	75	85	1	196	34	21	26	17	1.95
15691010--15691184	25	7.0	25	73	11	119	36	20	25	18	1.95
15691112--15691201	25	3.6	25	79	5	83	34	21	25	18	1.96
15697389--15697433	23	2.0	23	95	0	81	28	8	22	40	1.84
15697628--15697779	76	2.0	76	100	0	304	28	19	18	32	1.96
15698874--15699844	4	242.5	4	86	1	1073	25	7	26	40	1.81
15714124--15714191	34	2.0	34	85	5	93	20	26	23	29	1.99
15719236--15719314	36	2.2	35	81	4	104	25	27	25	21	1.99
15720477--15720897	127	3.3	127	77	4	456	22	19	23	34	1.97
15720386--15720610	86	2.7	83	78	6	236	21	20	23	34	1.97
15720774--15721105	40	7.9	42	73	12	270	23	20	23	32	1.98
15720385--15720979	82	7.1	82	73	11	382	22	19	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15720898--15721145	130	1.9	130	96	0	460	23	20	23	31	1.98
15721163--15721925	100	7.7	100	88	0	951	25	21	22	30	1.99
15721163--15721925	50	15.3	50	69	1	438	25	21	22	30	1.99
15722206--15722262	23	2.4	24	91	2	89	31	24	10	33	1.89
15723154--15723194	18	2.3	18	86	0	55	0	17	2	80	0.82
15732593--15732793	43	4.7	44	87	6	254	32	27	19	19	1.96
15752242--15752348	41	2.6	40	82	1	133	31	24	17	26	1.97
15752644--15752828	95	2.0	94	98	1	361	32	21	9	36	1.85
15762206--15762255	25	2.1	24	88	7	75	48	8	12	32	1.69
15775370--15775647	79	3.5	79	77	4	301	30	16	11	41	1.83
15776430--15776524	37	2.5	37	81	1	100	30	17	15	35	1.92
15790352--15790416	21	3.3	19	72	20	53	72	1	23	3	1.07
15790360--15790404	22	2.0	24	86	8	67	75	2	17	4	1.07
15794347--15794373	3	9.0	3	100	0	54	66	0	0	33	0.92
15794530--15794583	20	2.8	19	86	5	65	37	1	3	57	1.27
15794527--15794585	19	3.1	19	82	7	75	38	1	5	54	1.33
15799852--15799902	25	2.1	24	85	3	66	68	0	0	31	0.90
15802542--15802577	11	3.3	11	92	0	63	44	8	8	38	1.65
15807813--15807880	34	2.0	35	94	2	120	45	11	8	33	1.72
15808687--15808725	19	2.2	18	90	9	62	48	0	2	48	1.15
15810381--15810531	35	4.3	35	84	6	180	35	17	23	23	1.95
15816959--15817032	37	2.0	37	94	0	130	31	16	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15820184--15820214	15	2.1	15	93	0	53	22	25	22	29	1.99
15820468--15820543	38	2.0	38	94	0	134	35	14	17	32	1.90
15823997--15824033	16	2.3	16	90	0	56	24	5	0	70	1.08
15834015--15834058	5	8.8	5	100	0	88	40	0	0	59	0.98
15853809--15854467	331	2.0	331	87	2	966	21	15	17	45	1.85
15854786--15854817	15	2.1	15	94	0	55	68	9	6	15	1.36
15858283--15858449	63	2.7	63	82	1	183	27	19	26	25	1.99
15862253--15862294	14	3.1	15	83	16	56	64	0	0	35	0.94
15863434--15863470	3	12.3	3	100	0	74	64	0	0	35	0.94
15863756--15863790	12	2.8	13	86	8	54	8	31	2	57	1.44
15866083--15866195	56	2.0	56	91	0	181	35	15	9	38	1.81
15869457--15869487	13	2.4	13	88	0	53	32	0	29	38	1.57
15874106--15874161	18	3.0	18	79	10	51	28	0	12	58	1.34
15886699--15886747	18	2.7	18	83	3	62	67	2	0	30	1.02
15886699--15886747	9	5.3	9	78	4	53	67	2	0	30	1.02
15896066--15896109	22	2.0	22	86	4	63	43	11	4	40	1.61
15896682--15896714	13	2.5	13	95	0	57	48	24	9	18	1.76
15903231--15903299	28	2.5	28	87	0	102	59	1	0	39	1.06
15905390--15905430	20	2.0	21	90	4	66	51	0	0	48	1.00
15906287--15906400	56	2.0	56	98	0	219	51	13	21	13	1.74
15907934--15907997	31	2.1	31	93	0	110	25	0	18	56	1.42
15909955--15909995	20	2.0	20	95	0	73	31	9	17	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15910539--15910588	18	2.8	18	84	0	64	40	8	38	14	1.75
15912907--15912946	20	2.0	20	100	0	80	45	0	20	35	1.51
15919951--15920017	25	2.7	25	90	4	100	43	47	4	4	1.43
15924579--15924621	22	1.9	23	85	4	61	39	4	4	51	1.44
15927774--15927863	25	3.7	24	74	12	76	17	25	22	34	1.96
15930476--15930512	18	2.1	18	89	0	56	62	5	16	16	1.51
15931198--15931247	16	3.1	16	77	8	57	38	2	4	56	1.30
15934024--15934157	69	1.9	69	89	0	205	29	14	28	27	1.95
15940451--15940504	21	2.6	20	75	11	54	64	0	1	33	1.04
15940451--15940522	22	3.5	21	78	15	71	63	0	1	34	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145