genome.fa.s2.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  39  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12518684--12519063	100	3.8	100	92	0	600	22	20	23	33	1.97
12528635--12528668	3	11.0	3	93	6	59	32	0	0	67	0.91
12528969--12529002	15	2.4	14	90	5	50	38	5	2	52	1.41
12536853--12537032	88	2.0	89	98	1	353	41	1	6	50	1.36
12542671--12542811	40	3.5	40	94	0	246	31	25	15	27	1.96
12551639--12551687	23	2.1	23	96	0	89	61	4	2	32	1.26
12552246--12552270	5	5.0	5	100	0	50	80	0	0	20	0.72
12552823--12552857	17	2.1	17	100	0	70	22	5	17	54	1.64
12561942--12562517	293	2.0	293	100	0	1152	31	18	16	33	1.93
12563628--12563711	41	2.0	41	90	0	132	32	28	17	21	1.96
12564533--12564638	27	3.9	27	91	2	160	31	27	9	32	1.88
12574347--12574572	27	8.5	26	76	7	211	45	19	17	18	1.86
12578136--12578417	54	5.2	53	82	2	294	40	21	19	18	1.91
12578136--12578420	27	10.6	26	81	3	257	40	21	19	17	1.91
12578136--12578420	81	3.5	81	83	1	340	40	21	19	17	1.91
12580107--12580161	19	2.8	20	89	10	80	72	0	0	27	0.85
12580100--12580161	6	9.8	6	77	10	61	74	0	1	24	0.91
12585576--12585615	21	1.9	21	85	10	55	40	27	5	27	1.77
12595482--12595522	20	2.0	20	85	4	55	48	7	7	36	1.59
12596002--12596192	95	2.0	96	98	1	375	41	9	4	44	1.56
12606084--12606120	9	4.1	9	92	0	65	45	13	10	29	1.77
12613642--12613770	25	5.2	24	66	19	68	37	21	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12613730--12613780	26	2.0	26	92	0	84	39	21	21	17	1.93
12616766--12616883	44	2.7	44	77	7	114	28	16	25	29	1.96
12625493--12625673	83	2.2	81	77	7	193	18	18	28	34	1.95
12625574--12625800	125	1.8	126	88	2	350	17	17	29	36	1.93
12625683--12625819	42	3.3	43	66	21	110	13	13	33	38	1.85
12625478--12625858	209	1.8	206	86	2	548	17	16	29	37	1.92
12625699--12625858	84	1.9	84	98	0	311	16	15	32	35	1.90
12626676--12626791	21	5.6	21	76	12	78	13	0	45	39	1.50
12626737--12626806	14	4.9	14	79	8	70	4	0	48	47	1.21
12627353--12627408	16	3.5	16	80	7	69	66	3	7	23	1.33
12627696--12627740	23	2.0	23	90	0	72	28	44	2	24	1.66
12627696--12627752	11	4.9	11	73	12	51	29	47	1	21	1.61
12628114--12628170	23	2.4	24	85	8	73	33	43	1	21	1.63
12629598--12629636	21	1.9	20	84	5	51	43	0	2	53	1.14
12629737--12629836	21	4.4	21	66	23	60	42	5	3	50	1.39
12629598--12629836	70	3.4	70	93	2	385	40	5	3	50	1.43
12630586--12630649	16	3.9	16	88	8	92	45	17	0	37	1.48
12630579--12630944	9	41.3	9	64	21	80	43	16	4	35	1.67
12630728--12630799	16	4.3	16	79	8	81	47	18	1	33	1.57
12630550--12630917	144	2.6	144	96	0	668	43	15	4	36	1.69
12630874--12630944	25	2.8	25	85	8	83	45	18	1	35	1.58
12630895--12630942	16	3.0	16	93	0	87	47	18	2	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12638631--12639075	43	10.5	43	74	9	236	24	21	22	31	1.98
12638517--12639038	44	12.4	40	73	12	246	24	21	22	31	1.98
12638629--12638950	83	3.8	83	89	3	459	23	20	23	32	1.98
12640291--12640325	13	2.6	14	86	9	54	11	20	2	65	1.37
12642543--12642671	64	2.0	64	98	0	249	33	15	22	28	1.95
12648677--12648833	43	3.6	42	75	8	140	22	17	29	29	1.97
12648674--12648852	86	2.1	86	80	8	204	24	18	29	28	1.98
12648823--12649004	43	4.2	43	89	0	274	30	25	20	22	1.98
12648843--12649024	43	4.2	43	90	0	283	28	25	22	23	1.99
12649454--12649538	44	1.9	44	90	0	134	34	10	7	48	1.65
12650442--12650494	24	2.2	24	90	6	81	37	1	7	52	1.41
12652166--12652191	11	2.4	11	100	0	52	73	7	0	19	1.07
12663600--12663639	20	2.0	20	90	0	62	27	10	12	50	1.72
12663579--12663655	14	5.0	15	72	20	61	32	9	16	41	1.80
12664811--12664871	32	1.9	32	93	0	104	52	16	3	27	1.59
12664811--12664884	32	2.5	30	82	10	82	52	16	4	27	1.61
12666932--12666964	14	2.4	14	94	0	57	15	9	60	15	1.58
12669591--12669638	21	2.3	21	78	3	53	41	25	4	29	1.74
12672921--12672973	3	17.7	3	76	7	54	28	5	3	62	1.35
12673003--12673040	2	19.0	2	94	0	67	47	0	0	52	1.00
12673279--12673329	20	2.5	19	78	12	57	33	1	1	62	1.17
12673314--12673391	33	2.4	34	74	10	81	29	7	5	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12675457--12675485	15	2.0	15	93	6	51	41	27	20	10	1.85
12684055--12684099	23	2.0	22	83	8	56	37	15	2	44	1.59
12687051--12687619	292	1.9	293	98	1	1115	31	18	21	28	1.97
12689235--12689696	44	10.7	43	74	11	279	28	20	23	27	1.99
12689232--12689703	173	2.7	172	79	10	448	28	20	23	27	1.99
12689212--12689696	217	2.2	217	92	0	783	28	20	24	27	1.99
12689363--12689696	89	3.8	87	74	12	240	28	19	24	27	1.99
12689955--12689983	15	2.0	15	93	6	51	41	27	20	10	1.85
12699339--12699640	42	7.1	42	69	9	121	38	18	18	24	1.93
12699540--12699641	42	2.4	42	80	0	123	40	15	17	26	1.90
12699540--12699654	42	2.7	41	77	5	122	38	14	20	26	1.91
12707858--12707919	30	2.1	30	93	0	106	58	12	3	25	1.50
12711009--12711070	26	2.3	27	78	10	74	66	9	0	24	1.22
12712526--12712660	41	3.3	41	90	0	198	26	25	21	25	1.99
12713449--12713497	2	26.0	2	78	12	50	46	4	2	46	1.33
12713444--12713496	27	2.0	26	88	3	79	45	5	1	47	1.37
12717074--12717107	18	1.9	18	88	5	52	50	8	2	38	1.49
12721537--12721593	18	3.3	18	77	18	68	54	33	0	12	1.38
12721537--12721583	9	5.3	9	80	14	62	55	31	0	12	1.38
12723073--12723105	6	5.5	6	100	0	66	51	0	0	48	1.00
12726241--12726543	154	2.0	154	97	0	570	31	20	21	26	1.98
12732809--12732871	4	16.5	4	73	26	57	77	1	3	17	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12732838--12732877	7	6.0	7	88	11	66	85	0	0	15	0.61
12732813--12732876	20	3.1	20	84	8	76	78	1	3	17	0.96
12732838--12732877	13	3.1	13	92	7	64	85	0	0	15	0.61
12732838--12732877	20	2.0	20	100	0	80	85	0	0	15	0.61
12732980--12733018	6	6.2	6	94	5	60	84	0	0	15	0.62
12732980--12733018	13	3.0	13	89	10	62	84	0	0	15	0.62
12732834--12733117	141	2.0	142	99	0	561	40	5	14	40	1.69
12743108--12743162	22	2.5	22	90	0	92	27	29	23	20	1.99
12749650--12749679	8	3.8	8	90	0	51	50	0	33	16	1.46
12749668--12749815	57	2.6	57	80	8	140	50	4	18	27	1.67
12749769--12749798	7	4.4	7	95	4	53	73	0	13	13	1.10
12751058--12751105	22	2.2	22	88	7	71	58	8	0	33	1.28
12755574--12755754	42	4.2	43	77	9	156	31	19	15	33	1.93
12762248--12762289	21	2.0	21	86	4	59	57	0	4	38	1.20
12762601--12762630	14	2.1	14	93	0	51	26	30	13	30	1.94
12762658--12762691	17	2.1	16	88	5	50	20	26	29	23	1.99
12765814--12766021	45	4.6	45	81	2	220	24	21	9	44	1.82
12769083--12769354	148	1.8	148	88	1	411	36	16	18	28	1.93
12770308--12770368	30	2.0	30	100	0	122	42	24	16	16	1.88
12773088--12773324	116	2.1	115	92	0	402	21	24	28	25	1.99
12774774--12774809	17	2.1	17	89	0	54	38	30	16	13	1.88
12789945--12790009	25	2.6	25	85	0	94	24	16	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12792660--12792755	45	2.2	44	86	5	131	23	17	18	39	1.92
12795942--12795973	16	2.0	16	100	0	64	37	6	31	25	1.81
12807588--12807618	5	6.4	5	92	7	55	41	22	0	35	1.54
12808413--12808449	9	4.1	9	85	0	56	48	13	8	29	1.71
12808534--12808763	102	2.2	103	97	1	435	30	42	0	27	1.56
12808894--12808934	21	1.9	22	90	5	66	21	24	0	53	1.46
12816286--12816380	45	2.1	45	88	3	147	28	17	23	30	1.97
12818863--12818910	6	7.8	6	85	2	51	62	2	20	14	1.42
12822573--12822597	7	3.6	7	100	0	50	64	0	0	36	0.94
12825308--12825699	85	4.6	84	75	11	291	18	27	32	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145