genome.fa.s2.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  43  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13752926--13752985	28	2.1	29	84	3	77	40	36	0	23	1.55
13753146--13753208	7	8.9	7	81	8	56	33	49	0	17	1.47
13753146--13753208	15	4.4	15	82	11	78	33	49	0	17	1.47
13753149--13753207	14	4.2	14	82	8	75	32	49	0	18	1.48
13753143--13753248	42	2.5	41	81	3	122	36	43	0	19	1.52
13753149--13753217	13	5.0	14	81	8	70	33	46	0	20	1.51
13753657--13753953	115	2.6	116	73	8	273	29	23	17	29	1.97
13753904--13754188	114	2.5	114	80	4	281	32	23	16	27	1.96
13769410--13769455	18	2.4	20	82	7	60	69	4	4	21	1.24
13770719--13770774	28	2.0	28	86	10	80	33	3	0	62	1.12
13802870--13802911	21	2.0	22	86	9	61	69	11	9	9	1.38
13806893--13806924	12	2.7	12	100	0	64	0	25	50	25	1.50
13814212--13814274	26	2.4	26	100	0	126	28	17	6	47	1.72
13818916--13818983	27	2.7	26	79	9	68	16	14	13	55	1.69
13821095--13821279	92	2.0	92	95	0	334	34	12	22	29	1.92
13839455--13839497	23	1.9	21	86	13	59	76	4	9	9	1.14
13844393--13844914	177	3.0	175	89	2	769	38	10	11	39	1.76
13854533--13854589	26	2.1	27	83	3	71	31	1	1	64	1.13
13856350--13856409	22	2.7	22	97	0	111	8	18	26	46	1.77
13856481--13856749	42	6.2	42	81	12	323	27	21	23	27	1.99
13856489--13856746	133	2.0	126	87	8	367	29	21	22	26	1.99
13856632--13856826	78	2.4	81	80	11	206	30	21	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13857162--13857197	12	3.0	12	91	0	54	2	36	16	44	1.63
13857183--13857251	21	3.3	21	85	4	77	4	36	20	39	1.72
13865736--13866083	191	1.8	190	89	0	543	41	13	25	19	1.88
13866923--13866951	15	1.9	15	100	0	58	41	34	3	20	1.69
13867453--13868102	114	5.7	113	90	2	980	24	20	21	34	1.97
13869761--13869824	33	1.9	33	87	6	94	31	6	12	50	1.65
13872887--13872923	15	2.5	15	90	0	56	54	0	10	35	1.36
13877459--13877493	6	5.8	6	100	0	70	17	31	17	34	1.93
13878057--13878106	15	2.9	18	70	24	54	34	18	2	46	1.60
13881560--13881632	23	3.2	23	96	0	128	21	20	26	31	1.98
13884322--13884392	35	2.0	35	94	0	124	39	18	21	21	1.93
13885559--13885629	36	2.0	36	94	0	124	39	11	18	30	1.86
13891243--13891295	23	2.3	23	93	0	97	20	20	26	32	1.98
13896734--13897145	217	1.9	217	95	1	747	31	22	12	34	1.91
13897650--13897808	82	2.0	80	91	2	255	25	22	11	40	1.88
13905137--13905237	30	3.3	30	76	10	89	26	1	3	67	1.19
13906767--13906845	40	2.0	40	89	0	122	17	27	31	22	1.97
13906989--13907022	11	3.1	11	91	0	59	17	32	2	47	1.63
13911675--13912114	126	3.5	125	92	0	718	28	20	19	32	1.97
13912248--13912290	22	2.0	22	86	4	61	48	37	0	13	1.43
13917774--13917825	24	2.2	24	82	0	59	50	5	3	40	1.45
13919192--13919239	18	2.6	18	83	3	60	45	2	2	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13922316--13922345	14	2.2	14	94	5	53	46	0	0	53	1.00
13929652--13929778	25	5.2	25	72	11	86	32	21	25	20	1.98
13930321--13930377	18	3.2	18	74	23	57	0	17	5	77	0.95
13930376--13930411	13	2.7	13	91	4	54	22	0	2	75	0.94
13931677--13931737	5	12.0	5	89	3	95	57	0	3	39	1.15
13944889--13944928	18	2.2	18	86	8	55	52	10	10	27	1.66
13974958--13975004	19	2.5	19	83	10	53	65	2	2	29	1.15
13975341--13975400	29	2.1	29	84	9	79	40	1	1	56	1.19
13976518--13976549	16	1.9	17	93	6	57	50	18	18	12	1.78
13978940--13979015	18	4.2	18	68	15	59	42	0	1	56	1.07
13978987--13979044	17	3.5	17	76	19	68	39	0	1	58	1.08
13978971--13979044	34	2.2	35	95	4	134	40	0	2	56	1.13
13978983--13979041	19	3.3	19	77	18	81	37	0	1	61	1.07
13978976--13979058	19	4.6	18	71	15	64	38	0	3	57	1.16
13980058--13980101	23	2.0	21	82	8	52	36	0	4	59	1.18
13982701--13982874	86	2.0	87	98	1	341	47	3	8	40	1.50
13985717--13985790	36	2.1	36	86	0	103	37	13	20	28	1.90
13996645--13996784	33	4.3	32	68	22	96	52	2	4	40	1.36
13996649--13996784	49	2.8	48	71	14	134	51	2	4	41	1.37
14000261--14000292	15	2.2	15	94	5	57	31	3	0	65	1.08
14003306--14003349	19	2.3	19	92	4	70	27	11	9	52	1.67
14004466--14004498	12	2.8	12	86	4	50	9	15	30	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14006977--14007064	25	3.6	25	82	10	101	30	20	25	23	1.98
14006977--14007074	49	2.0	48	80	11	110	31	19	25	23	1.98
14013550--14013584	17	2.1	17	100	0	70	45	17	17	20	1.85
14022028--14022060	16	2.1	16	100	0	66	33	24	18	24	1.97
14023213--14023238	11	2.4	11	100	0	52	53	0	0	46	1.00
14023864--14023902	12	3.4	11	82	10	51	53	2	0	43	1.14
14025936--14025982	21	2.4	19	79	13	51	10	25	2	61	1.39
14033142--14033247	25	4.3	24	77	10	106	16	28	22	32	1.96
14033135--14033247	50	2.3	49	83	7	140	15	29	21	33	1.94
14035136--14035195	18	3.4	18	75	11	61	71	1	25	1	1.04
14054882--14054957	38	2.0	38	100	0	152	26	15	34	23	1.95
14064374--14064398	13	1.9	13	100	0	50	80	0	0	20	0.72
14064917--14064956	21	1.9	21	89	0	62	45	15	12	27	1.82
14065875--14066513	245	2.6	243	90	3	977	29	8	21	41	1.82
14068331--14068524	39	5.0	39	84	2	255	32	2	18	46	1.61
14072494--14072559	25	2.7	25	81	4	73	34	18	25	21	1.96
14072622--14072683	25	2.6	25	82	10	76	35	19	22	22	1.96
14073195--14073235	21	2.0	21	90	0	64	43	19	2	34	1.64
14082524--14082584	21	2.8	21	82	5	77	34	24	24	16	1.95
14082511--14082617	23	4.9	23	79	8	80	37	23	20	18	1.94
14083369--14083409	20	2.0	20	95	0	73	29	19	0	51	1.47
14083760--14083796	8	4.5	8	90	6	56	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14085377--14085475	28	3.6	28	81	1	101	34	16	21	28	1.94
14086146--14086250	54	1.9	54	100	0	210	44	8	20	25	1.80
14087965--14087992	12	2.3	12	100	0	56	35	0	0	64	0.94
14091382--14091426	22	2.0	23	95	4	83	57	8	11	22	1.60
14100743--14100782	20	2.0	20	90	0	62	30	27	7	35	1.84
14109031--14109081	25	2.0	25	100	0	102	54	21	11	11	1.68
14113406--14113438	17	1.9	17	93	0	57	54	0	6	39	1.25
14116614--14116750	63	2.2	63	86	0	184	29	28	18	23	1.97
14117315--14117366	3	18.7	3	82	11	58	73	0	25	1	0.94
14124231--14124670	39	11.2	39	91	0	637	31	21	15	32	1.94
14127722--14127837	27	4.3	27	88	0	169	15	15	23	45	1.84
14146362--14146526	43	3.9	42	75	13	151	21	20	29	29	1.98
14146368--14146525	84	1.9	84	82	10	198	22	20	29	27	1.99
14153415--14153697	87	3.3	85	81	7	295	42	10	12	34	1.77
14158203--14158277	35	2.1	35	90	0	114	26	18	29	25	1.98
14163107--14163194	25	3.5	25	93	0	131	28	17	31	22	1.96
14163187--14163305	25	4.8	24	79	11	89	34	19	27	18	1.95
14170662--14170705	21	2.1	21	83	8	54	27	22	25	25	2.00
14178289--14178445	78	2.0	79	97	1	298	36	16	19	27	1.93
14213118--14213617	249	2.0	250	99	0	993	36	12	7	44	1.70
14214954--14214991	19	2.0	19	90	10	60	28	2	0	68	1.03
14231565--14231705	71	2.0	71	91	5	232	32	24	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14235931--14236002	33	2.2	33	94	0	126	51	18	4	26	1.64
14237316--14237380	34	1.9	34	90	0	103	32	7	7	52	1.58
14242173--14242237	34	1.9	34	93	0	112	30	9	7	52	1.61
14242502--14242868	122	3.0	122	90	0	545	31	14	18	35	1.91
14250224--14250261	19	2.0	19	90	10	60	28	5	0	65	1.14
14276398--14276436	4	9.8	4	100	0	78	51	23	0	25	1.49
14286831--14286897	4	16.8	4	96	0	125	50	22	0	26	1.49
14293589--14293645	24	2.3	24	84	3	78	52	0	1	45	1.11
14293589--14293656	24	2.8	24	80	8	68	52	1	2	42	1.25
14294718--14294750	14	2.3	15	94	5	59	75	0	0	24	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145