genome.fa.s2.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  96  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31946449--31946493	16	2.8	16	82	0	54	60	2	4	33	1.29
31947087--31947143	22	2.6	21	80	5	60	64	0	3	31	1.10
31947167--31947198	16	2.0	16	100	0	64	31	0	6	62	1.20
31947286--31947483	90	2.2	90	85	2	272	32	9	22	35	1.85
31969579--31969756	49	3.6	49	79	5	153	26	20	29	23	1.99
31977256--31977355	51	2.0	51	93	0	173	24	16	26	34	1.95
31978366--31978812	41	10.9	41	90	0	554	20	19	31	28	1.97
31978896--31978950	25	2.2	26	81	9	71	60	7	10	21	1.55
31979136--31979196	14	4.3	15	78	15	67	27	0	32	39	1.57
31979166--31979241	21	3.6	21	75	12	66	25	0	38	36	1.56
31979179--31979233	14	3.9	14	75	2	56	23	0	38	38	1.55
31979180--31979261	29	2.9	28	85	5	110	29	0	34	36	1.58
31979177--31979262	7	12.0	7	74	14	50	29	0	34	36	1.58
31979194--31979259	22	3.1	22	80	4	64	28	0	34	36	1.58
31979222--31979267	15	3.1	15	76	14	51	36	0	23	39	1.55
31979303--31979350	25	1.9	25	95	0	87	35	0	2	62	1.07
31979430--31979590	76	2.1	76	94	1	277	30	4	22	42	1.75
31979581--31979618	14	2.7	15	88	12	62	26	0	31	42	1.56
31979637--31979676	21	1.9	21	94	0	71	25	0	45	30	1.54
31979643--31979677	14	2.5	14	90	0	52	25	0	45	28	1.54
31983559--31983786	82	2.8	82	100	0	456	28	16	8	46	1.76
31984977--31985292	43	7.4	44	77	7	285	28	18	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31984977--31985249	129	2.1	127	81	4	316	28	17	29	23	1.97
31985449--31985491	22	2.0	22	85	0	59	44	25	18	11	1.84
31985751--31985785	17	2.1	17	88	0	52	42	2	17	37	1.64
31986886--31986913	12	2.3	12	100	0	56	28	42	21	7	1.79
31989275--31989341	30	2.2	30	83	0	80	20	19	35	23	1.95
32000779--32000860	20	4.1	19	76	9	83	35	15	32	15	1.90
32011950--32011983	16	2.1	16	100	0	68	44	11	32	11	1.77
32017771--32017810	19	2.2	18	86	4	53	62	10	2	25	1.39
32028070--32028137	31	2.2	30	82	7	75	26	8	20	44	1.81
32029255--32029492	71	3.4	71	99	0	467	41	5	7	45	1.55
32030646--32030673	2	14.0	2	100	0	56	50	0	0	50	1.00
32035657--32035696	18	2.1	20	86	9	57	20	5	0	75	0.99
32035671--32035745	3	25.0	3	71	15	57	29	4	2	64	1.26
32035660--32035745	15	5.6	14	73	21	50	27	4	2	65	1.25
32035660--32035732	18	4.1	18	73	19	55	27	2	2	67	1.18
32035693--32035754	15	4.3	15	76	13	51	33	4	3	58	1.36
32042966--32043036	26	2.7	26	82	4	99	22	18	30	28	1.97
32052390--32052436	26	1.9	26	83	12	64	14	8	4	72	1.24
32064847--32064883	12	2.7	14	80	20	51	18	21	29	29	1.97
32066289--32066321	17	1.9	17	88	11	50	42	12	0	45	1.41
32073615--32073740	27	4.7	27	82	2	155	34	15	23	26	1.95
32073804--32073862	24	2.5	24	83	5	75	22	6	25	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32073957--32074025	26	2.6	26	86	2	84	18	23	21	36	1.95
32073978--32074028	26	2.0	26	96	0	93	19	23	21	35	1.96
32074054--32074218	32	5.2	32	72	9	113	21	21	20	35	1.96
32074103--32074248	64	2.3	64	86	2	195	19	21	21	36	1.95
32074031--32074248	32	6.8	32	72	5	109	20	22	21	35	1.96
32074260--32074306	22	2.1	22	84	0	58	21	14	14	48	1.80
32074318--32074368	26	2.0	26	88	0	75	19	27	19	33	1.96
32079959--32080165	106	2.0	105	99	0	405	36	4	14	43	1.67
32080447--32080493	20	2.3	20	92	0	76	51	4	25	19	1.65
32081118--32081168	24	2.1	24	85	7	68	49	1	29	19	1.60
32088643--32088670	8	3.5	8	100	0	56	75	0	0	25	0.81
32107867--32107927	1	61.0	1	100	0	122	0	0	0	100	0.00
32110981--32111048	27	2.5	27	100	0	136	29	5	19	45	1.73
32111362--32111405	18	2.6	17	82	7	54	70	0	2	27	0.99
32119446--32119477	16	2.0	16	93	0	55	53	9	6	31	1.58
32120101--32120191	47	1.9	47	88	4	139	18	15	5	60	1.54
32120206--32120299	46	2.0	47	83	6	120	17	18	6	58	1.59
32120099--32120297	106	1.9	107	86	5	287	17	17	5	59	1.56
32120390--32120439	19	2.6	19	77	0	55	10	36	0	54	1.34
32132255--32132511	23	11.0	23	80	4	291	38	19	13	28	1.89
32132274--32132514	70	3.4	70	93	1	428	39	19	12	28	1.88
32135677--32135709	15	2.2	15	100	0	66	60	12	15	12	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32136696--32136748	12	4.5	12	75	11	56	18	11	7	62	1.52
32136696--32136748	23	2.2	24	83	9	65	18	11	7	62	1.52
32136772--32136911	47	3.0	47	100	0	280	20	21	19	38	1.93
32145432--32145505	27	2.7	26	83	4	76	29	20	29	20	1.97
32151334--32151379	23	2.0	23	100	0	92	39	21	17	21	1.93
32162042--32162086	20	2.3	20	96	3	83	28	31	13	26	1.94
32162686--32162729	23	1.9	23	86	9	63	9	0	34	56	1.31
32191834--32191858	12	2.1	12	100	0	50	0	8	0	92	0.40
32192222--32192262	17	2.4	17	100	0	82	34	4	26	34	1.78
32202692--32202743	8	7.0	8	74	24	51	34	0	1	63	1.06
32202692--32202743	14	3.6	14	76	19	61	34	0	1	63	1.06
32206873--32206925	17	3.1	16	76	10	52	56	1	0	41	1.10
32206958--32207074	33	3.2	33	64	25	83	41	9	6	41	1.64
32206919--32207074	76	2.0	77	98	1	305	41	8	7	42	1.65
32217444--32217501	21	3.1	18	77	15	64	70	1	24	3	1.12
32228954--32229023	22	3.2	21	83	4	86	32	17	15	34	1.91
32231971--32232068	51	1.9	51	95	0	178	34	9	6	50	1.59
32244955--32244984	6	5.2	6	92	8	53	0	13	0	86	0.57
32252304--32252332	13	2.1	14	93	6	51	13	0	20	65	1.26
32259572--32259619	24	2.0	24	95	0	87	27	12	14	45	1.81
32268108--32268423	45	7.0	45	88	0	461	30	24	15	28	1.96
32277262--32277286	13	1.9	13	100	0	50	48	20	8	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32283266--32283326	26	2.4	26	83	2	79	45	9	6	37	1.63
32286236--32286270	16	2.2	16	89	0	52	62	22	0	14	1.31
32288865--32288934	29	2.3	31	85	4	90	52	12	12	21	1.72
32290683--32290729	20	2.3	20	88	0	67	61	2	4	31	1.27
32290755--32290797	10	4.4	10	76	5	52	65	0	0	34	0.93
32290983--32291054	19	3.7	18	72	20	56	29	12	0	58	1.35
32290988--32291060	21	3.6	20	74	18	62	28	9	0	61	1.27
32293430--32293574	44	3.3	44	67	12	136	57	9	2	29	1.44
32293416--32293592	87	2.0	88	98	1	347	57	9	2	31	1.42
32294733--32294766	16	2.1	17	88	5	52	41	8	17	32	1.80
32298229--32298305	37	2.1	37	83	9	95	57	6	5	31	1.46
32301626--32301686	26	2.3	26	91	0	95	37	9	22	29	1.87
32304835--32304867	17	2.0	17	88	5	50	42	6	0	51	1.26
32306542--32306566	2	12.5	2	100	0	50	48	0	0	52	1.00
32309311--32309351	15	2.5	17	80	11	59	63	2	2	31	1.20
32314447--32314513	29	2.3	29	82	5	73	22	16	16	44	1.86
32314689--32315036	123	2.8	123	92	0	579	31	15	20	32	1.94
32318041--32318065	10	2.5	10	100	0	50	48	0	8	44	1.32
32318101--32318237	69	2.0	69	87	5	197	42	5	13	38	1.67
32318142--32318287	55	2.6	55	94	4	247	43	5	13	37	1.66
32318284--32318378	29	3.3	29	98	1	183	28	0	27	44	1.55
32318357--32318402	17	2.7	18	93	6	78	28	0	17	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32318398--32318583	26	7.7	25	65	20	92	45	14	2	37	1.59
32318401--32318585	71	2.6	71	93	2	318	45	14	2	36	1.59
32319618--32319652	18	1.9	18	88	0	52	31	8	34	25	1.86
32320825--32320849	5	5.0	5	100	0	50	80	0	0	20	0.72
32324077--32324114	9	4.2	9	93	0	67	28	10	13	47	1.76
32324166--32324196	9	3.4	9	90	0	53	38	22	12	25	1.90
32324856--32325915	109	9.7	109	98	0	2007	29	17	18	34	1.94
32337170--32337771	44	13.8	44	67	13	249	29	18	25	26	1.98
32337165--32337836	131	5.1	131	92	0	1119	29	19	24	26	1.99
32339806--32339866	32	2.0	30	84	9	79	39	6	1	52	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145