genome.fa.s2.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  21  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6704597--6705149	217	2.5	217	90	0	874	27	23	20	27	1.99
6717065--6717120	18	3.2	18	72	10	53	50	7	5	37	1.53
6717235--6717304	24	2.8	23	81	12	77	70	4	4	21	1.23
6717456--6717498	23	1.9	23	85	4	61	65	6	6	20	1.41
6718030--6718084	28	2.0	28	85	7	76	56	9	10	23	1.62
6719022--6719204	42	4.3	42	90	1	285	35	22	20	21	1.96
6719022--6719182	85	1.9	85	94	0	286	34	22	20	21	1.96
6719611--6719681	21	3.4	21	88	0	106	4	46	18	30	1.68
6720167--6720253	37	2.4	37	92	0	138	34	8	13	43	1.74
6720361--6720720	37	9.6	37	69	14	184	37	5	10	46	1.61
6720303--6720504	93	2.2	92	89	0	296	35	5	11	47	1.64
6720172--6720609	205	2.1	205	95	0	779	36	5	11	46	1.64
6720396--6720674	57	4.9	57	84	2	366	37	5	10	46	1.62
6720396--6720683	113	2.6	112	91	1	468	37	5	10	46	1.61
6720599--6720637	20	2.0	20	94	0	69	46	5	5	43	1.48
6720205--6720778	262	2.2	260	90	2	893	37	5	10	46	1.62
6720566--6720766	94	2.2	92	88	1	303	38	4	8	47	1.57
6720508--6720778	149	1.8	149	91	0	452	37	5	9	46	1.61
6720702--6720738	18	2.1	18	94	0	65	35	0	13	51	1.41
6720172--6720766	205	2.9	203	86	5	686	36	5	10	46	1.63
6725816--6726432	231	2.7	231	91	1	1006	33	19	18	28	1.95
6726813--6726950	7	19.6	7	75	1	114	47	44	0	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6726812--6726971	63	2.5	64	87	2	223	49	42	0	8	1.32
6731963--6732019	29	1.9	30	89	7	89	47	0	3	49	1.18
6732701--6733185	98	4.9	98	96	0	862	35	25	11	27	1.90
6751283--6751350	29	2.3	30	82	7	86	20	17	2	58	1.51
6752617--6752653	18	2.0	19	89	5	58	51	16	5	27	1.66
6753389--6753454	31	2.1	31	94	0	114	37	10	12	39	1.77
6753677--6753705	15	1.9	15	100	0	58	20	6	6	65	1.40
6754145--6754170	13	2.0	13	100	0	52	15	0	7	76	0.99
6766656--6766931	139	2.0	140	99	0	545	53	7	6	32	1.54
6782243--6782301	5	11.6	5	75	21	52	59	0	1	38	1.08
6785344--6785386	16	2.9	14	83	10	50	55	11	0	32	1.36
6785347--6785386	14	2.6	16	88	7	57	57	12	0	30	1.36
6786006--6786079	24	3.1	24	76	7	71	18	31	1	48	1.57
6789054--6789127	34	2.1	35	82	9	89	37	18	9	33	1.84
6789300--6789660	41	8.8	41	84	4	431	22	27	20	29	1.99
6789300--6789668	123	3.0	123	86	0	495	22	27	20	29	1.99
6804000--6804033	6	5.7	6	100	0	68	67	0	0	32	0.91
6805219--6805264	7	6.1	7	80	14	56	41	0	41	17	1.49
6805197--6805264	31	2.2	31	92	5	111	44	0	39	16	1.48
6805226--6805281	24	2.3	24	93	6	96	41	0	41	17	1.50
6805212--6805257	17	2.9	17	78	15	62	43	0	41	15	1.46
6806141--6806285	71	2.0	71	94	0	254	43	15	10	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6807111--6807202	37	2.5	35	77	15	87	53	5	2	39	1.36
6807070--6807202	48	2.6	50	77	10	130	51	6	2	39	1.39
6808961--6808990	7	4.3	7	100	0	60	56	0	30	13	1.37
6810271--6810315	21	2.1	21	83	4	54	64	8	0	26	1.23
6821816--6821840	6	4.2	6	100	0	50	68	0	0	32	0.90
6841557--6841760	27	7.6	27	87	1	293	35	18	21	25	1.95
6841799--6841865	23	2.8	24	76	10	66	19	8	25	46	1.79
6841824--6841882	24	2.4	25	80	5	77	18	10	25	45	1.81
6841970--6842029	26	2.3	26	85	0	84	18	23	23	35	1.96
6842026--6842195	32	5.4	32	86	1	218	21	21	18	38	1.94
6842187--6842250	22	2.9	21	76	4	65	18	20	15	45	1.86
6845313--6845987	342	2.0	336	82	5	806	34	12	17	35	1.87
6852791--6852934	72	2.0	72	100	0	288	36	13	23	26	1.93
6855632--6855798	86	2.0	85	90	1	262	30	6	24	38	1.81
6856563--6856691	50	2.6	50	86	0	177	30	13	22	33	1.93
6856554--6856701	25	5.9	25	71	3	91	29	15	21	33	1.94
6858539--6859392	2	427.0	2	99	0	1681	49	49	0	0	1.03
6873099--6873129	16	1.9	16	100	0	62	67	19	0	12	1.22
6895755--6895906	29	5.2	28	84	6	180	23	25	12	38	1.90
6901861--6901891	2	15.5	2	100	0	62	0	51	0	48	1.00
6903624--6903697	20	3.7	20	80	3	78	8	28	21	41	1.81
6912107--6912133	5	5.4	5	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6914596--6914648	21	2.6	21	84	3	72	32	26	16	24	1.97
6925040--6925099	30	1.9	33	83	10	81	56	0	3	40	1.16
6925689--6925724	5	7.0	5	87	6	54	36	0	2	61	1.11
6925696--6925724	11	2.7	11	94	5	51	37	0	0	62	0.96
6925755--6925807	18	3.0	18	73	13	56	64	3	7	24	1.37
6929262--6929626	181	2.0	181	97	0	694	32	15	21	30	1.94
6930037--6930127	43	2.1	43	89	4	139	43	10	9	35	1.73
6930037--6930138	43	2.4	43	86	3	116	43	12	9	34	1.76
6938206--6938244	20	2.0	20	94	0	69	64	12	10	12	1.51
6938653--6938694	20	2.1	20	86	8	59	9	21	14	54	1.68
6948417--6948456	20	2.1	19	85	4	53	30	10	7	52	1.62
6950217--6950335	43	2.8	43	90	0	193	46	15	7	31	1.73
6952305--6952396	19	4.8	19	84	0	130	35	9	16	38	1.82
6967113--6967181	19	3.4	21	73	15	56	10	27	17	44	1.80
6967113--6967212	20	5.0	20	73	4	76	10	32	20	38	1.85
6971962--6971995	2	17.5	2	93	6	61	50	0	0	50	1.00
6974810--6974866	25	2.3	25	90	0	87	26	29	21	22	1.99
6977490--6977676	51	3.6	51	72	9	171	35	14	27	22	1.93
6977501--6977740	105	2.3	105	89	0	363	36	12	27	23	1.91
6977550--6977738	54	3.6	53	71	7	168	38	12	26	23	1.90
6977541--6977772	105	2.3	102	86	5	310	37	13	26	21	1.91
6977850--6978036	33	5.7	33	91	0	311	41	20	20	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6977840--6978036	66	3.0	66	97	0	367	42	20	21	16	1.89
6982099--6982165	22	3.0	22	88	4	98	67	1	4	26	1.19
6983909--6983933	2	12.5	2	100	0	50	0	0	48	52	1.00
6984508--6984540	15	2.2	15	100	0	66	45	0	6	48	1.27
6985401--6985448	16	3.1	16	79	11	55	37	12	12	37	1.81
6986878--6986942	27	2.4	28	82	15	82	38	10	1	49	1.47
6987003--6987083	27	3.0	27	92	3	128	29	24	30	14	1.95
6987438--6987499	33	2.0	31	87	9	90	22	22	4	50	1.68
6987539--6987690	33	4.1	39	72	19	121	50	2	20	26	1.61
6987560--6987690	33	3.7	33	79	15	163	52	2	22	22	1.58
6987551--6987700	74	2.0	74	100	0	300	52	2	20	24	1.59
6988044--6988086	18	2.3	18	84	8	50	4	4	9	81	0.97
6989139--6989172	5	6.6	5	90	6	50	85	0	14	0	0.60
6990616--6990697	35	2.3	35	100	0	164	54	12	12	20	1.69
6992745--6992790	20	2.2	21	88	3	67	52	13	26	8	1.69
6994984--6995796	405	2.0	406	99	0	1619	41	8	13	36	1.74
6997081--6997152	3	24.0	3	100	0	144	33	33	0	33	1.58
7001861--7001912	22	2.2	24	77	12	56	63	11	7	17	1.50
7002767--7002817	7	7.4	7	85	14	63	68	0	15	15	1.21
7004212--7004794	50	11.6	50	70	7	302	33	22	19	24	1.97
7004209--7004793	101	5.8	100	84	3	651	34	22	19	24	1.97
7014810--7014844	18	1.9	18	94	0	61	51	2	2	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7025685--7025717	16	1.9	17	88	11	50	45	9	0	45	1.35
7027576--7027610	4	8.8	4	100	0	70	22	0	25	51	1.48
7043114--7043161	24	2.0	25	83	4	62	68	6	6	18	1.32
7044790--7045003	106	2.0	107	99	0	421	35	17	22	24	1.96
7045519--7045552	10	3.1	11	87	12	52	55	0	0	44	0.99
7045801--7045853	18	2.9	18	74	2	52	56	7	3	32	1.45
7045841--7045885	23	2.0	22	86	4	63	62	4	0	33	1.15
7046438--7046510	19	3.8	19	88	0	119	35	15	10	38	1.82
7056815--7056885	6	12.0	6	96	3	135	32	0	16	50	1.46
7056817--7056885	35	2.0	35	100	0	138	31	0	17	50	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145