genome.fa.s2.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  61  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20019607--20019697	45	2.0	45	97	2	175	47	6	8	37	1.61
20024058--20024104	16	2.8	17	90	3	69	17	4	2	76	1.04
20028228--20028484	138	1.9	137	80	4	302	33	26	21	18	1.96
20034778--20034813	5	7.0	5	93	6	63	80	0	0	19	0.71
20036244--20036281	11	3.5	11	92	3	60	57	0	0	42	0.98
20043580--20043819	50	4.7	50	77	4	187	28	21	27	22	1.99
20048200--20048236	18	2.1	18	100	0	74	32	27	5	35	1.79
20050763--20050863	52	1.9	52	89	0	157	33	24	9	31	1.88
20051628--20051667	20	2.0	20	90	0	62	50	12	10	27	1.72
20051616--20051682	34	1.9	35	87	3	100	46	11	8	32	1.72
20055307--20055339	16	2.1	16	94	0	57	21	30	24	24	1.99
20055498--20055584	25	3.4	25	81	9	86	17	27	20	34	1.95
20055498--20055585	26	3.5	26	81	10	101	17	27	20	35	1.94
20055668--20055789	65	1.9	65	94	0	217	16	18	16	48	1.82
20056502--20056538	4	9.2	4	100	0	74	24	0	24	51	1.49
20058579--20058653	34	2.2	34	87	0	105	24	0	29	46	1.53
20061746--20061871	25	5.1	25	69	8	64	28	22	19	30	1.98
20069130--20069174	22	2.0	22	91	0	72	40	15	8	35	1.79
20069498--20069625	25	5.2	25	72	14	104	25	23	22	28	1.99
20069479--20069629	49	3.1	49	81	2	178	25	22	23	29	1.99
20072846--20072870	12	2.1	12	100	0	50	32	8	16	44	1.76
20074397--20074572	76	2.3	78	84	2	221	38	4	15	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20076311--20076356	22	2.1	22	100	0	92	8	17	4	69	1.31
20076487--20076640	21	7.4	21	73	19	126	40	12	9	38	1.75
20076438--20076640	104	2.0	104	97	0	388	41	12	8	36	1.75
20076859--20076943	44	1.9	44	85	4	118	28	24	17	29	1.97
20076941--20077470	132	4.0	132	93	0	871	25	23	20	31	1.98
20077109--20077467	44	8.2	44	64	12	119	25	22	20	30	1.98
20077421--20077698	88	3.1	87	85	4	360	23	23	25	28	1.99
20077505--20077643	44	3.2	43	64	11	102	25	25	23	24	2.00
20079321--20079445	63	2.0	63	96	0	232	18	30	16	34	1.93
20090804--20090863	20	2.8	24	79	20	64	8	21	3	66	1.33
20090826--20090863	20	1.9	20	100	0	76	10	21	5	63	1.46
20090997--20091072	21	3.7	21	89	3	111	38	11	10	39	1.77
20091010--20091073	19	3.3	19	84	4	83	39	14	9	37	1.78
20091344--20091575	66	3.5	66	87	3	308	29	8	18	43	1.79
20091359--20091548	31	5.9	30	73	16	141	28	8	18	43	1.80
20096941--20096979	18	2.1	19	85	4	53	53	5	2	38	1.37
20099849--20099889	4	10.2	4	100	0	82	48	26	0	24	1.51
20101095--20101124	11	2.6	11	94	5	51	20	36	0	43	1.52
20102479--20102503	7	3.6	7	100	0	50	28	0	12	60	1.32
20103145--20103184	18	2.2	18	95	0	71	22	30	7	40	1.81
20103613--20103688	25	2.8	28	80	17	106	46	1	14	38	1.53
20103749--20104072	23	14.6	23	80	11	286	45	27	0	25	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20103749--20104055	44	6.9	46	82	7	280	45	27	0	26	1.58
20103749--20104072	67	4.9	68	85	4	346	45	27	0	25	1.58
20103755--20104055	90	3.4	91	77	12	268	46	27	0	25	1.58
20103909--20104100	43	4.5	42	79	10	176	42	31	1	25	1.62
20104105--20104346	115	2.1	116	90	4	382	38	11	7	42	1.69
20111847--20111912	32	2.1	32	91	0	105	34	21	12	31	1.90
20112079--20112229	41	3.7	41	81	1	160	23	27	19	29	1.98
20112082--20112248	41	4.1	40	74	10	108	23	26	19	29	1.98
20118587--20118630	22	2.0	23	86	4	63	36	4	9	50	1.55
20130373--20130464	43	2.1	43	95	0	166	28	18	3	50	1.63
20145407--20145786	54	7.0	55	81	4	371	24	21	14	39	1.91
20145407--20145786	162	2.3	162	84	2	478	24	21	14	39	1.91
20147483--20147532	25	2.0	25	84	0	64	6	34	2	58	1.34
20151079--20151130	20	3.1	16	79	17	52	55	0	1	42	1.10
20151091--20151129	20	2.0	20	94	0	69	48	0	2	48	1.15
20151236--20151287	20	2.6	20	93	0	86	44	13	7	34	1.72
20151688--20151740	21	2.5	22	84	6	74	30	35	5	28	1.80
20155904--20156018	45	2.5	44	83	5	133	39	17	20	23	1.92
20156040--20156254	46	4.7	46	87	2	290	45	14	21	18	1.85
20155998--20156254	137	1.9	136	82	4	320	44	16	20	18	1.86
20159499--20159554	20	2.8	20	81	8	69	35	19	32	12	1.89
20159539--20159626	20	4.4	20	79	0	95	34	17	32	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20165516--20165545	15	1.9	16	93	6	53	43	0	0	56	0.99
20172370--20174061	847	2.0	847	98	0	3294	32	16	21	30	1.95
20186018--20186054	18	2.0	19	89	5	58	51	0	43	5	1.24
20193237--20193562	25	13.1	25	88	1	467	39	17	20	22	1.92
20199824--20199895	24	3.0	24	69	2	56	31	15	13	38	1.87
20200922--20200964	5	8.6	5	94	0	77	58	2	0	39	1.11
20204311--20204356	24	1.9	24	82	8	58	17	43	2	36	1.61
20207077--20207118	14	3.2	13	80	13	50	40	0	2	57	1.12
20214991--20215190	40	5.0	40	80	5	127	37	16	28	18	1.92
20215018--20215194	80	2.2	79	83	1	219	37	17	28	16	1.92
20215054--20215194	20	7.1	20	66	13	67	36	18	28	17	1.93
20234283--20234327	7	6.4	7	82	17	58	68	0	15	15	1.21
20234283--20234309	13	2.1	13	100	0	54	70	0	14	14	1.17
20234283--20234327	15	3.2	14	87	9	58	68	0	15	15	1.21
20235877--20236342	50	9.4	50	71	3	341	33	23	20	23	1.97
20235849--20236385	100	5.4	100	89	2	776	31	23	21	23	1.98
20241659--20241811	50	3.1	50	85	0	207	24	22	32	20	1.98
20250837--20250884	24	2.0	24	100	0	96	29	25	8	37	1.85
20253625--20253749	50	2.5	50	80	0	151	28	24	28	19	1.98
20254021--20254070	20	2.5	20	78	15	59	58	8	24	10	1.57
20264572--20264656	39	2.2	37	81	8	91	28	27	24	20	1.99
20264818--20264873	17	3.4	16	78	11	60	41	0	1	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20264818--20264872	5	11.2	5	74	18	53	40	0	1	58	1.09
20264819--20264874	27	2.0	29	86	6	80	42	0	1	55	1.10
20273527--20273578	27	1.9	27	84	0	68	38	21	23	17	1.93
20275364--20275459	50	1.9	50	97	0	183	58	7	8	26	1.53
20275553--20275591	11	3.5	11	83	16	53	71	12	0	15	1.14
20275554--20275600	23	2.1	22	88	11	69	72	10	2	14	1.21
20288266--20288323	29	2.0	29	100	0	116	37	31	6	24	1.82
20308242--20309228	504	2.0	504	95	0	1794	29	34	13	22	1.92
20311196--20311235	16	2.4	16	87	4	62	85	0	15	0	0.61
20311196--20311235	11	3.7	10	81	18	53	85	0	15	0	0.61
20312802--20312838	20	1.9	18	89	10	56	37	5	8	48	1.56
20319908--20320141	51	4.6	51	78	7	278	29	26	17	25	1.97
20319904--20320136	101	2.3	101	84	5	292	30	27	16	25	1.97
20320412--20320506	47	2.0	47	97	0	181	29	25	7	37	1.83
20321089--20321129	11	3.5	11	93	6	64	39	9	12	39	1.76
20325638--20325871	51	4.6	50	77	5	238	31	26	17	25	1.97
20325634--20325866	101	2.3	102	81	3	265	31	26	16	25	1.96
20332065--20332124	28	2.2	26	91	5	93	23	20	25	31	1.98
20333541--20333596	27	2.1	27	83	6	69	23	5	3	67	1.27
20334193--20334317	66	1.9	66	91	1	205	20	25	7	47	1.75
20338851--20338889	9	4.3	9	84	9	53	25	0	0	74	0.82
20339262--20339302	14	3.0	14	75	17	50	14	21	0	63	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20343986--20344078	24	3.9	24	85	0	132	29	27	19	23	1.98
20352150--20352286	56	2.6	50	83	6	148	21	30	21	25	1.99
20356361--20356553	50	3.8	50	86	0	260	21	30	22	24	1.99
20360589--20360786	50	3.8	50	83	4	216	22	29	21	27	1.99
20367499--20367733	50	4.6	50	78	4	204	23	28	21	27	1.99
20391150--20391188	19	2.1	19	100	0	78	41	0	10	48	1.37
20397317--20397379	26	2.4	26	81	7	74	31	0	3	65	1.09
20401819--20402145	113	2.9	113	92	1	532	29	14	17	37	1.90
20402581--20402605	6	4.2	6	100	0	50	0	0	16	84	0.63
20408845--20409067	115	1.9	115	97	0	419	16	36	9	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145