genome.fa.s2.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  14  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4713751--4713884	47	2.8	48	76	6	139	36	12	21	29	1.90
4733342--4733418	29	2.6	29	79	6	82	41	11	18	28	1.85
4735480--4735509	2	15.0	2	100	0	60	0	50	0	50	1.00
4735512--4735543	5	6.4	5	100	0	64	18	0	0	81	0.70
4736854--4736919	32	2.0	33	91	2	107	12	24	9	54	1.66
4736872--4736934	33	2.1	32	82	14	80	11	25	7	55	1.62
4739201--4739264	22	2.9	22	83	0	74	42	20	25	12	1.87
4739782--4739846	19	3.2	19	73	23	60	30	0	4	64	1.14
4740636--4740687	25	2.1	25	92	7	88	25	26	9	38	1.86
4750186--4750961	275	2.8	269	81	6	837	33	27	7	31	1.84
4752583--4752647	29	2.1	29	83	8	76	60	1	0	38	1.07
4752565--4752651	32	2.6	34	74	20	85	57	1	1	40	1.14
4763181--4763232	10	5.0	10	73	17	52	32	0	1	65	1.04
4763225--4763266	21	2.0	21	85	0	57	47	2	2	47	1.28
4772310--4772361	26	2.0	26	100	0	104	23	19	30	26	1.98
4777699--4777731	16	2.0	17	88	5	50	39	0	6	54	1.25
4790923--4790975	26	2.0	27	81	7	63	32	18	5	43	1.74
4796558--4796587	12	2.5	12	100	0	60	50	10	0	40	1.36
4799489--4799664	46	3.9	46	92	1	275	33	15	20	30	1.93
4800264--4800300	14	2.5	15	91	8	58	54	5	8	32	1.53
4801320--4801353	17	2.0	17	94	0	59	44	17	14	23	1.86
4802625--4802940	158	2.0	159	99	0	625	48	11	13	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4807774--4807835	28	2.2	28	85	5	81	29	1	1	67	1.09
4807800--4807844	20	2.2	21	81	18	60	28	0	2	68	1.01
4807979--4808026	22	2.2	21	85	7	60	66	2	2	29	1.14
4809156--4809195	21	2.0	21	90	5	64	62	7	5	25	1.42
4812591--4812632	21	2.0	20	86	13	59	61	4	0	33	1.17
4816254--4816315	32	1.9	32	86	0	88	64	3	1	30	1.19
4816295--4816375	11	7.5	11	72	20	57	61	1	2	34	1.17
4816321--4816393	9	7.4	9	74	19	58	69	1	1	27	1.04
4816325--4816375	11	4.5	11	79	11	59	64	1	1	31	1.15
4816325--4816375	22	2.3	22	86	10	68	64	1	1	31	1.15
4816290--4816364	40	1.9	38	91	2	114	64	1	2	32	1.16
4816295--4816404	51	2.1	53	91	5	179	62	0	2	33	1.15
4816408--4816432	7	3.6	7	100	0	50	88	0	0	12	0.53
4816321--4816432	52	2.2	50	81	13	124	69	0	2	26	1.07
4831165--4832053	381	2.3	381	97	0	1679	33	16	25	24	1.96
4834352--4834915	222	2.5	222	88	1	844	35	13	25	26	1.92
4839097--4839144	15	3.5	15	68	26	52	35	22	12	29	1.91
4839098--4839154	25	2.3	25	100	0	114	36	24	12	26	1.91
4846065--4846148	42	2.0	42	93	4	143	22	5	8	63	1.45
4848109--4848200	27	3.2	27	69	20	78	53	10	16	19	1.72
4848110--4848283	60	2.9	61	78	13	191	49	13	16	21	1.79
4853278--4853470	66	3.0	66	85	3	241	44	8	31	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4858296--4858326	16	1.9	16	100	0	62	32	6	6	54	1.51
4860556--4860588	13	2.6	13	95	4	59	39	21	9	30	1.84
4861431--4861464	6	5.7	6	92	0	50	29	5	35	29	1.81
4866296--4866337	19	2.3	18	83	4	57	61	4	0	33	1.17
4871188--4871246	29	2.0	30	86	3	84	52	1	8	37	1.42
4877261--4877317	30	1.9	30	89	7	89	50	3	15	29	1.61
4877264--4877331	28	2.3	29	85	5	84	54	4	11	29	1.56
4886120--4886158	17	2.2	19	86	9	55	64	0	2	33	1.08
4888286--4888324	3	13.0	3	83	0	51	5	30	2	61	1.31
4889457--4889979	204	2.6	205	88	1	766	26	14	21	37	1.92
4893280--4893339	31	1.9	31	82	0	75	21	13	23	41	1.88
4899144--4899204	22	2.7	24	80	7	65	49	4	42	3	1.40
4905330--4905379	19	2.6	19	78	6	57	64	6	8	22	1.43
4906522--4906720	96	2.1	96	85	0	263	30	29	16	24	1.96
4906618--4907012	123	3.2	123	86	3	575	27	32	15	24	1.95
4907903--4907949	22	2.1	22	96	0	85	31	10	8	48	1.68
4915924--4916236	91	3.5	88	80	9	312	47	16	9	25	1.78
4916100--4916459	140	2.6	139	78	6	368	47	17	8	25	1.76
4916382--4916889	184	2.7	186	78	7	516	43	15	8	32	1.77
4916382--4916891	92	5.6	90	74	9	384	43	15	8	32	1.77
4917423--4917655	91	2.5	91	75	11	217	46	13	8	32	1.72
4917423--4917683	92	2.9	90	76	11	246	46	12	7	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4917954--4918304	91	3.9	91	76	10	274	46	12	8	31	1.73
4917886--4918356	88	5.3	91	74	9	335	46	13	8	30	1.74
4919904--4919954	13	3.9	13	72	10	50	39	21	3	35	1.72
4920795--4920827	2	16.5	2	100	0	66	0	48	0	51	1.00
4924160--4924382	46	4.8	46	94	0	374	28	25	9	36	1.88
4925576--4925622	17	2.8	17	90	3	69	55	17	0	27	1.42
4926643--4926717	34	2.2	33	84	9	98	25	29	1	44	1.63
4926643--4926719	22	3.5	22	81	18	97	25	28	1	44	1.62
4926643--4926719	11	6.9	11	74	21	72	25	28	1	44	1.62
4937821--4938040	40	5.4	40	70	8	160	33	19	21	26	1.97
4937821--4938064	123	2.0	124	90	0	382	34	18	20	25	1.96
4938756--4939702	104	9.1	104	100	0	1894	34	11	16	37	1.85
4942844--4942869	13	2.0	13	100	0	52	46	15	7	30	1.74
4948667--4948713	20	2.3	20	100	0	94	42	36	4	17	1.68
4949386--4949457	36	2.0	36	100	0	144	22	8	19	50	1.74
4951013--4951085	30	2.4	30	83	0	83	35	23	4	36	1.74
4951591--4951644	16	3.2	16	80	10	63	81	1	16	0	0.78
4951590--4951644	7	8.0	7	82	8	51	80	1	18	0	0.81
4951917--4951969	11	4.7	11	78	19	56	79	1	18	0	0.83
4951928--4951971	13	3.3	13	81	12	54	81	2	15	0	0.78
4951928--4951972	14	3.3	14	81	3	56	82	2	15	0	0.77
4951917--4951973	15	3.8	15	75	13	55	80	1	17	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4952280--4952345	22	3.3	21	70	22	61	37	12	10	39	1.77
4952280--4952322	22	2.0	21	90	4	68	39	11	13	34	1.82
4952277--4952379	37	2.8	37	80	8	120	36	12	10	39	1.78
4952337--4952380	18	2.4	18	84	0	61	45	9	9	36	1.68
4952482--4952584	20	5.4	20	72	16	69	42	14	8	33	1.77
4952517--4952596	20	3.8	21	77	9	83	40	16	7	36	1.77
4954381--4954473	9	10.4	9	85	2	134	23	11	24	39	1.88
4954381--4954473	44	2.1	45	95	2	170	23	11	24	39	1.88
4956019--4956052	2	17.0	2	87	0	50	47	2	0	50	1.16
4961884--4961914	5	6.2	5	92	0	53	45	19	16	19	1.86
4963960--4963998	16	2.4	16	82	0	51	35	10	2	51	1.50
4964886--4964970	41	2.1	41	90	0	134	28	31	12	27	1.93
4970303--4971314	477	2.1	476	95	0	1814	33	16	22	27	1.95
4970303--4971333	474	2.2	476	94	1	1811	33	16	23	26	1.95
4992040--4992085	14	3.2	15	69	12	51	34	0	4	60	1.16
4992037--4992097	28	2.2	28	90	0	95	36	1	4	57	1.30
5001071--5001235	46	3.6	45	73	11	165	31	23	13	30	1.94
5007185--5007239	22	2.5	22	85	5	76	43	18	21	16	1.88
5007185--5007251	22	3.0	21	82	8	73	41	16	22	19	1.90
5007549--5007587	16	2.6	15	88	11	62	35	0	2	61	1.10
5011400--5011456	19	3.1	19	85	7	73	56	7	0	36	1.27
5011415--5011502	44	2.0	44	82	6	106	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5012025--5012140	60	1.9	61	85	5	164	25	18	18	37	1.93
5012024--5012176	60	2.6	59	80	10	161	24	18	17	39	1.91
5021646--5021702	19	3.1	19	85	7	73	56	7	0	36	1.27
5021661--5021748	44	2.0	44	82	6	106	52	4	0	43	1.22
5023785--5023837	25	2.1	25	100	0	106	41	24	11	22	1.86
5028072--5028240	40	4.2	40	99	0	329	31	17	7	43	1.76
5033515--5033657	50	2.9	50	82	0	169	21	28	22	27	1.99
5036246--5036287	21	2.0	21	85	0	57	30	14	16	38	1.89
5037808--5037845	2	19.0	2	94	0	67	0	2	47	50	1.15
5037902--5038145	120	2.0	120	95	0	443	31	4	26	36	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145