genome.fa.s2.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  123  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41023626--41023792	87	1.9	87	88	0	253	28	19	26	25	1.98
41023621--41023924	87	3.5	87	79	7	233	27	21	25	25	1.99
41023773--41023993	88	2.5	88	85	2	275	27	26	24	21	1.99
41024326--41024602	45	6.0	45	77	8	261	29	15	24	29	1.96
41024442--41024634	96	2.0	96	86	2	271	29	20	26	23	1.99
41024603--41024891	116	2.4	119	83	6	370	29	19	25	25	1.99
41028136--41028168	16	2.0	17	94	5	59	42	3	0	54	1.15
41035061--41035201	49	2.8	50	85	4	176	28	25	11	34	1.90
41035033--41035201	75	2.2	80	85	5	231	28	25	11	34	1.91
41035007--41035201	26	7.5	26	81	6	200	26	25	12	35	1.92
41037034--41037081	18	2.6	19	83	6	62	10	4	41	43	1.58
41038188--41038218	8	3.9	8	91	0	53	35	0	12	51	1.40
41047936--41048044	59	1.9	56	81	9	130	44	8	3	44	1.51
41049465--41049540	29	2.6	29	82	4	89	48	14	11	25	1.77
41058185--41058211	4	6.8	4	100	0	54	51	22	0	25	1.48
41059795--41059853	27	2.2	27	84	6	75	23	22	16	37	1.94
41059815--41059982	26	6.4	26	84	2	201	29	27	11	31	1.91
41059816--41059982	52	3.2	52	87	1	226	29	27	10	31	1.91
41067262--41067394	57	2.4	57	84	3	162	30	23	18	27	1.98
41080339--41080470	57	2.3	56	79	5	140	25	25	20	28	1.99
41085763--41085946	26	7.1	26	79	7	194	27	26	11	34	1.91
41085724--41085951	52	4.3	53	80	6	230	28	26	10	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41085780--41085951	78	2.2	79	85	6	242	28	26	11	34	1.90
41086301--41086574	26	10.5	25	79	5	251	28	26	10	34	1.90
41086323--41086574	78	3.2	78	84	3	319	27	26	11	34	1.90
41092935--41092974	20	1.9	22	90	10	66	22	2	12	62	1.42
41093652--41093874	119	1.9	119	100	0	446	32	25	19	23	1.97
41100086--41100146	29	2.0	30	93	6	106	26	21	16	36	1.94
41101331--41101370	3	13.3	3	89	0	62	70	2	0	27	1.01
41102564--41102621	26	2.2	26	81	0	71	29	22	22	25	1.99
41107266--41108377	565	2.0	565	95	0	1992	36	13	18	31	1.90
41112852--41112909	30	1.9	30	100	0	116	43	25	3	27	1.71
41119725--41119751	5	5.4	5	100	0	54	18	0	0	81	0.69
41121163--41121220	20	2.9	20	77	10	64	10	27	17	44	1.81
41127272--41127299	1	28.0	1	100	0	56	0	0	0	100	0.00
41127777--41127826	24	2.1	24	84	0	64	10	6	8	76	1.17
41128022--41128057	16	2.2	16	90	0	54	22	0	2	75	0.94
41128588--41128620	16	2.0	17	88	5	50	69	3	0	27	1.03
41142641--41142671	16	1.9	16	93	0	53	48	0	9	41	1.36
41152265--41152304	19	2.1	19	86	9	55	32	2	5	60	1.32
41156591--41156648	23	2.5	23	77	2	62	55	13	10	20	1.68
41160383--41160458	26	2.9	26	78	0	80	38	9	18	34	1.83
41163031--41163105	20	3.7	19	76	3	60	44	25	21	9	1.82
41163164--41163251	20	4.4	20	69	11	81	35	22	22	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41165290--41165314	2	12.5	2	100	0	50	0	48	0	52	1.00
41172804--41173279	237	2.0	238	99	0	945	35	8	18	37	1.82
41173363--41173427	27	2.4	27	86	0	103	29	24	4	41	1.75
41175732--41175939	46	4.5	46	83	3	213	26	21	21	30	1.98
41180024--41180093	27	2.6	27	77	8	81	35	22	14	27	1.93
41183103--41183224	45	2.7	45	77	8	133	27	29	19	23	1.98
41182945--41183402	218	2.1	218	92	0	756	29	25	18	26	1.98
41183024--41183397	44	8.5	44	70	11	180	29	25	18	26	1.98
41191256--41191299	22	2.0	22	82	8	54	22	0	9	68	1.18
41191601--41191642	15	2.8	15	75	13	50	33	30	11	23	1.91
41193159--41193288	62	2.1	63	82	4	156	31	11	7	49	1.67
41203491--41203771	140	2.0	141	97	0	537	34	8	14	42	1.75
41211210--41211269	29	2.1	29	81	3	68	48	11	6	33	1.66
41212280--41212314	16	2.2	16	100	0	70	40	0	11	48	1.39
41222599--41222688	43	2.1	43	97	0	171	26	13	30	30	1.94
41225324--41225989	333	2.0	333	99	0	1316	32	18	12	36	1.89
41226005--41226036	15	2.1	15	94	0	55	68	9	6	15	1.36
41227901--41228015	27	4.3	27	85	0	158	44	20	14	20	1.86
41230967--41231009	22	2.0	22	90	0	68	53	9	25	11	1.67
41242866--41242972	23	4.9	23	80	10	107	36	21	21	20	1.95
41242866--41242953	44	2.1	41	82	6	104	36	21	22	19	1.95
41245169--41245265	32	2.9	32	74	10	97	50	9	20	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41245647--41245688	21	2.0	21	81	9	50	54	0	2	42	1.13
41247400--41247424	2	12.5	2	100	0	50	0	48	0	52	1.00
41247424--41247473	24	2.0	24	85	11	66	12	8	6	74	1.22
41252745--41252783	4	9.8	4	82	0	51	23	23	2	51	1.61
41252733--41252782	20	2.5	20	90	0	73	18	26	4	52	1.63
41253032--41253222	50	3.8	50	84	2	195	20	31	21	25	1.98
41255188--41255230	22	2.0	22	95	0	77	25	18	23	32	1.97
41260959--41260988	12	2.5	12	94	0	51	30	40	23	6	1.80
41263644--41263719	37	2.1	37	92	0	125	65	2	14	17	1.37
41266024--41266118	25	3.8	25	79	5	111	23	21	27	28	1.99
41267421--41267515	25	3.8	25	79	5	111	23	21	27	28	1.99
41270346--41270383	10	3.5	11	86	13	53	34	0	2	63	1.09
41271725--41271819	46	2.1	46	100	0	190	49	14	21	14	1.79
41278311--41278596	26	11.0	26	89	0	403	37	19	16	26	1.93
41278764--41278828	27	2.4	27	85	7	80	20	23	21	35	1.96
41279974--41280182	107	2.0	107	96	0	382	33	16	12	36	1.87
41282101--41282132	16	2.0	16	93	0	55	25	15	0	59	1.36
41282360--41282537	51	3.5	51	78	8	202	29	27	17	25	1.97
41321196--41322165	483	2.0	483	95	0	1733	30	16	22	30	1.96
41330179--41330211	14	2.4	14	94	0	57	45	24	6	24	1.75
41348531--41348563	17	1.9	17	93	0	57	42	6	24	27	1.78
41351002--41351046	19	2.4	19	84	0	54	15	8	6	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41354209--41354254	20	2.3	21	74	11	51	36	23	30	8	1.85
41358550--41358594	20	2.2	20	84	7	56	51	6	6	35	1.55
41360750--41360856	18	6.7	16	75	23	57	6	17	1	73	1.13
41360739--41360843	6	17.0	6	71	11	70	6	18	1	73	1.14
41360790--41360841	18	2.9	18	97	0	95	5	19	0	75	1.01
41360790--41360843	6	9.0	6	83	0	72	5	18	0	75	0.98
41362961--41363005	20	2.2	20	88	7	65	51	8	6	33	1.59
41365367--41365408	15	2.8	15	92	0	66	26	23	11	38	1.90
41370227--41370287	30	2.0	30	93	0	104	34	1	21	42	1.63
41373875--41373926	17	2.7	19	74	17	54	25	13	21	40	1.89
41374120--41374205	42	2.0	44	88	4	131	23	20	20	34	1.96
41374529--41374581	21	2.5	21	78	0	52	7	47	15	30	1.73
41389609--41389689	39	2.1	39	88	6	119	38	39	2	19	1.65
41390392--41390840	114	4.0	112	76	8	401	28	24	21	25	1.99
41393666--41393698	15	2.2	15	89	10	50	12	12	6	69	1.35
41404955--41405017	13	4.8	13	75	7	56	33	1	25	39	1.65
41404952--41405017	26	2.5	26	79	13	82	31	3	25	39	1.71
41413500--41413541	13	3.3	13	76	3	50	11	23	14	50	1.76
41413495--41413550	25	2.3	24	77	17	62	19	19	16	44	1.87
41418585--41418761	89	2.0	90	98	1	347	42	16	20	20	1.89
41423738--41423848	50	2.2	50	80	0	114	33	20	19	26	1.97
41426649--41426991	171	2.0	170	95	0	614	45	9	8	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41429437--41429600	29	5.7	29	80	2	168	26	27	9	36	1.88
41429437--41429600	58	2.8	58	77	5	188	26	27	9	36	1.88
41429431--41429594	87	1.9	87	93	0	283	25	28	10	35	1.89
41430138--41430181	21	2.2	20	83	4	52	54	13	0	31	1.39
41435283--41435491	29	7.2	29	78	3	177	23	25	13	36	1.92
41439139--41439168	15	1.9	16	93	6	53	56	0	0	43	0.99
41447043--41447280	27	8.8	26	82	8	264	44	20	18	16	1.87
41447043--41447296	54	4.7	54	83	2	305	44	19	19	17	1.87
41447046--41447298	81	3.1	81	80	4	296	44	19	18	17	1.87
41447629--41447689	30	2.0	31	90	3	97	27	24	19	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145