genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  110  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36961262--36961412	27	5.6	27	76	9	130	38	19	20	21	1.94
36961245--36961577	54	6.2	55	77	8	233	34	21	21	22	1.97
36961286--36961576	81	3.6	81	81	8	283	33	21	21	22	1.97
36961365--36961576	27	7.9	27	85	5	268	33	22	21	22	1.97
36961637--36961683	24	1.9	25	86	4	69	17	8	23	51	1.72
36961865--36962133	32	8.5	32	81	5	251	21	21	20	36	1.95
36961863--36962161	64	4.7	64	82	2	300	21	21	20	36	1.96
36961902--36962150	127	2.0	127	83	3	322	21	22	20	35	1.96
36965521--36965691	42	4.1	42	100	0	342	23	21	23	30	1.99
36974862--36974952	28	3.2	28	86	6	130	27	24	24	24	2.00
36975077--36975165	26	3.4	25	79	17	110	37	14	21	26	1.92
36975344--36975676	27	12.6	27	77	8	224	18	18	21	42	1.90
36975445--36975485	21	2.0	21	90	0	64	9	24	29	36	1.87
36977003--36977046	22	2.0	21	82	4	52	43	15	6	34	1.74
36979151--36979187	3	12.3	3	100	0	74	35	0	0	64	0.94
36988205--36988337	49	2.7	48	83	5	142	29	29	16	24	1.97
36988261--36988387	49	2.6	49	82	2	148	25	31	16	25	1.96
36990915--36990953	16	2.4	17	86	4	53	38	17	15	28	1.91
36993002--36993041	20	2.0	20	85	0	53	42	15	22	20	1.88
36999409--36999472	25	2.5	25	92	2	101	46	18	14	20	1.83
37000328--37000394	25	2.6	26	79	9	75	67	2	5	23	1.27
37000376--37000402	6	4.5	6	100	0	54	85	0	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37001796--37001838	16	2.6	16	85	7	50	79	6	4	9	1.06
37001813--37001882	6	11.3	6	76	11	52	74	4	5	15	1.17
37001849--37001895	23	2.0	24	88	8	71	72	4	4	19	1.18
37008665--37008756	46	2.0	46	93	4	159	30	26	8	34	1.86
37017839--37017951	51	2.2	51	93	0	190	30	8	30	29	1.88
37017987--37018210	102	2.2	102	100	0	448	38	12	29	20	1.88
37018243--37018336	33	2.8	33	83	0	116	42	13	26	17	1.86
37038330--37038370	21	2.0	21	81	18	50	31	19	26	21	1.97
37057299--37057362	7	9.1	7	91	0	74	21	0	48	29	1.51
37057762--37057939	58	3.0	58	90	3	293	28	6	9	55	1.57
37057762--37057939	60	3.0	60	90	4	290	28	6	9	55	1.57
37061913--37061937	13	1.9	13	100	0	50	64	4	0	32	1.12
37064711--37064756	15	3.1	15	90	6	67	50	0	2	47	1.13
37064897--37064987	45	2.0	45	85	2	121	34	27	5	32	1.80
37064968--37065019	16	3.2	16	94	0	86	34	36	0	28	1.58
37067675--37067720	24	1.9	24	90	0	74	39	2	6	52	1.40
37069492--37069546	26	2.1	26	93	0	92	21	12	40	25	1.89
37071748--37071887	43	3.3	43	74	12	126	29	25	16	29	1.97
37086987--37087105	61	1.9	63	89	3	188	21	10	12	54	1.68
37086988--37087117	62	2.1	60	85	5	172	20	10	12	56	1.66
37088205--37088248	16	2.8	15	82	6	52	65	4	0	29	1.12
37089302--37089437	30	4.7	29	81	2	148	22	18	9	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37089322--37089440	60	2.0	59	88	3	177	22	19	9	48	1.77
37089334--37089461	60	2.2	58	81	2	148	26	18	9	45	1.80
37089885--37090261	136	2.8	135	85	3	497	25	23	18	32	1.97
37090566--37090667	37	2.8	37	78	0	105	28	6	22	42	1.79
37091803--37091837	3	11.7	3	100	0	70	68	0	0	31	0.90
37092141--37092183	19	2.3	19	100	0	86	44	0	9	46	1.35
37100667--37100703	9	4.1	9	92	0	65	45	13	10	29	1.77
37100917--37100975	30	2.0	29	83	3	73	20	35	0	44	1.52
37102348--37102404	29	2.0	29	96	0	105	24	15	5	54	1.62
37107548--37107659	37	3.0	37	68	10	109	29	25	16	28	1.96
37107527--37107646	39	3.1	39	69	9	129	30	26	15	27	1.96
37109667--37109716	26	1.9	26	84	8	66	58	2	0	40	1.10
37117225--37117270	24	2.0	23	86	4	65	58	0	8	32	1.28
37118339--37118367	15	1.9	15	100	0	58	24	0	0	75	0.80
37118341--37118374	15	2.4	14	90	5	50	17	0	2	79	0.86
37121536--37121577	21	2.0	21	100	0	84	38	4	19	38	1.73
37122161--37122204	17	2.7	16	89	10	63	68	0	4	27	1.09
37123727--37123826	41	2.5	40	85	3	137	48	8	21	23	1.76
37123798--37123916	24	5.0	24	83	6	154	48	8	26	16	1.74
37125056--37125106	26	2.0	26	88	0	75	35	7	21	35	1.83
37125054--37125104	13	3.9	13	73	0	57	33	7	23	35	1.84
37129191--37129222	7	4.6	7	100	0	64	28	0	12	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37130404--37132101	23	75.3	23	74	15	1224	49	23	0	26	1.54
37130404--37132101	68	25.1	67	82	9	1318	49	23	0	26	1.54
37131177--37131214	20	1.9	20	94	0	67	50	23	0	26	1.50
37131748--37131815	15	4.6	15	68	23	54	51	27	0	20	1.48
37130400--37132101	45	37.8	46	75	11	1113	49	23	0	26	1.54
37135508--37135856	123	2.8	125	91	2	567	32	22	16	28	1.96
37136606--37136766	53	3.2	53	67	21	166	41	4	2	50	1.37
37136593--37136784	95	2.0	96	98	1	377	41	6	3	48	1.44
37139574--37139625	24	2.2	24	89	0	77	51	11	1	34	1.49
37142969--37143011	21	2.0	22	86	4	61	11	20	23	44	1.84
37143069--37143160	42	2.2	43	90	5	143	25	33	20	20	1.97
37147342--37147376	15	2.4	15	90	4	54	45	34	0	20	1.51
37147354--37147466	37	3.2	36	67	19	103	45	30	6	17	1.73
37147728--37148109	41	9.3	41	97	0	692	27	31	24	16	1.96
37148147--37148224	39	2.0	38	87	9	113	19	20	20	39	1.92
37148212--37148515	151	2.0	152	98	1	592	26	18	23	31	1.97
37150789--37150822	13	2.6	13	90	0	50	67	0	5	26	1.13
37150784--37150837	16	3.5	15	76	16	56	70	0	3	25	1.04
37154899--37155132	122	1.9	122	100	0	468	34	11	13	39	1.82
37156970--37157041	14	5.1	14	77	0	81	19	15	12	52	1.74
37159892--37159972	37	2.2	38	95	2	146	40	6	13	39	1.70
37160707--37160734	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37163443--37163656	105	2.0	106	99	0	421	32	8	12	47	1.71
37163744--37163801	26	2.3	26	85	14	77	32	8	6	51	1.59
37164816--37164855	21	2.0	21	85	5	55	42	2	2	52	1.28
37166559--37166587	10	3.0	10	95	5	51	62	10	27	0	1.28
37169112--37169137	13	2.0	13	100	0	52	23	30	30	15	1.95
37171832--37171888	21	2.6	22	75	13	55	31	1	19	47	1.60
37172371--37173078	358	2.0	354	89	2	1087	28	13	19	38	1.90
37174325--37174409	6	13.7	6	80	7	62	5	7	9	77	1.11
37174315--37174404	26	3.5	26	72	14	78	6	7	8	76	1.15
37174301--37174380	38	2.1	39	83	2	99	8	8	6	76	1.16
37184264--37184323	27	2.2	28	88	8	88	68	0	5	26	1.10
37185188--37185235	16	2.9	16	76	14	53	22	4	2	70	1.15
37185695--37185727	9	3.7	9	84	15	50	54	9	0	36	1.32
37185695--37185729	18	1.9	18	100	0	70	51	11	0	37	1.38
37188916--37188970	25	2.2	25	100	0	110	36	21	16	25	1.94
37192420--37192490	18	4.1	18	71	15	60	49	1	22	26	1.58
37193561--37193620	30	2.0	30	90	0	93	18	26	30	25	1.98
37194680--37194704	13	1.9	13	100	0	50	40	8	12	40	1.72
37195081--37195121	21	2.0	21	85	9	57	43	4	4	46	1.46
37198824--37198860	19	1.9	19	89	10	58	45	27	0	27	1.54
37199335--37199454	34	3.5	33	91	6	170	34	32	11	21	1.90
37207166--37207220	27	2.0	27	82	6	67	47	3	1	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37215538--37215591	25	2.1	26	83	10	67	29	3	3	62	1.29
37220993--37221073	40	2.0	40	95	0	144	30	25	4	38	1.77
37225019--37225052	16	2.1	17	88	5	52	35	20	11	32	1.89
37228909--37228970	19	3.3	19	72	20	58	33	4	0	61	1.17
37235235--37235274	20	2.0	20	86	13	57	47	12	0	40	1.41
37236594--37236621	5	5.6	5	100	0	56	64	35	0	0	0.94
37242637--37242717	36	2.3	35	83	10	96	27	7	7	58	1.52
37248444--37248481	17	2.2	17	90	0	58	42	34	5	18	1.73
37250556--37250606	21	2.4	21	86	0	75	3	47	15	33	1.64
37250491--37250650	87	1.8	87	89	0	239	14	30	16	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145