genome.fa.s2.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  136  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45317750--45317799	16	3.2	15	83	8	55	18	2	12	68	1.30
45325607--45325657	15	3.2	15	70	24	50	66	5	3	23	1.30
45325683--45325711	2	15.0	2	92	7	51	48	0	0	51	1.00
45327115--45327179	28	2.4	28	97	2	123	40	10	0	49	1.38
45329021--45329051	14	2.1	15	94	5	55	51	0	6	41	1.27
45328984--45329088	35	3.1	34	74	9	88	60	1	5	32	1.31
45329179--45329218	21	1.9	21	84	0	53	72	12	2	12	1.22
45329278--45329329	4	13.2	4	83	4	70	75	0	3	21	0.97
45330026--45330056	14	2.1	15	94	5	55	51	0	6	41	1.27
45329989--45330093	35	3.1	34	74	9	88	60	1	5	32	1.31
45330184--45330223	21	1.9	21	84	0	53	72	12	2	12	1.22
45330283--45330330	4	12.2	4	82	4	62	75	0	4	20	0.97
45332025--45332078	11	4.8	11	79	4	63	74	16	7	1	1.14
45332027--45332080	22	2.5	22	88	5	76	74	16	7	1	1.14
45335478--45335701	110	2.0	111	99	0	441	56	7	8	28	1.54
45337548--45337574	2	13.5	2	100	0	54	51	0	48	0	1.00
45352253--45352326	38	1.9	38	94	0	130	6	10	33	48	1.64
45359943--45359983	20	2.0	20	85	0	55	60	2	0	36	1.10
45360323--45360382	31	2.0	30	87	9	86	60	6	5	28	1.43
45361520--45361562	22	2.0	22	85	0	59	25	11	6	55	1.60
45362671--45362722	14	3.8	13	78	9	50	40	19	9	30	1.83
45362765--45362804	20	2.0	20	90	0	62	27	7	25	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45362831--45362855	13	1.9	13	100	0	50	24	0	32	44	1.54
45362906--45362953	21	2.2	22	81	3	53	14	6	39	39	1.71
45363273--45363308	13	2.6	14	91	4	56	27	8	22	41	1.82
45363954--45364011	29	2.0	29	83	6	73	36	6	0	56	1.26
45365336--45365377	20	2.0	21	86	4	59	61	0	0	38	0.96
45371855--45371879	5	5.0	5	100	0	50	20	0	0	80	0.72
45380009--45380057	17	2.9	17	82	8	57	22	0	4	73	1.00
45381067--45381144	6	14.4	5	81	10	59	78	0	3	17	0.90
45381060--45381144	12	7.2	11	78	16	82	77	0	3	18	0.91
45381101--45381146	6	7.8	6	97	2	85	82	0	0	17	0.67
45383796--45383980	46	4.0	46	97	0	325	27	25	9	37	1.87
45385207--45385248	17	2.6	16	85	7	57	50	23	0	26	1.50
45387956--45388014	29	2.0	29	83	6	75	45	10	1	42	1.48
45390563--45390617	21	2.6	22	91	8	89	12	30	18	38	1.88
45391152--45391204	2	26.5	2	100	0	106	0	0	49	50	1.00
45401994--45402018	12	2.1	12	100	0	50	36	24	24	16	1.94
45404305--45404334	6	4.8	6	92	8	51	63	16	3	16	1.44
45404308--45404332	13	1.9	13	100	0	50	64	16	4	16	1.44
45410442--45410478	16	2.4	16	90	4	58	59	5	2	32	1.34
45412693--45412761	30	2.3	30	82	5	77	44	13	5	36	1.67
45417619--45417679	29	2.1	29	90	0	95	37	6	0	55	1.26
45417619--45417688	29	2.4	29	85	4	79	40	5	1	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45429302--45429391	45	2.1	41	80	15	94	41	6	21	31	1.79
45429377--45429407	12	2.5	12	94	5	53	58	0	25	16	1.38
45439812--45439842	16	1.9	16	93	0	53	48	0	0	51	1.00
45443820--45443898	40	2.0	39	95	2	140	45	16	8	29	1.77
45461127--45461152	5	5.2	5	100	0	52	0	38	0	61	0.96
45462423--45462458	18	2.0	18	100	0	72	66	0	0	33	0.92
45462755--45462844	46	2.0	46	88	0	135	36	1	15	46	1.53
45463046--45463096	21	2.4	21	90	0	75	15	31	13	39	1.87
45463025--45463103	21	3.8	21	78	6	70	18	31	12	36	1.89
45466296--45467076	390	2.0	390	100	0	1562	38	10	4	46	1.59
45475460--45475498	18	2.2	18	86	9	53	23	5	7	64	1.40
45485358--45485394	16	2.3	16	90	9	58	56	21	2	18	1.54
45493889--45494051	6	26.8	6	70	9	89	17	39	1	41	1.60
45493887--45494054	30	5.5	30	81	4	158	17	39	1	41	1.60
45493889--45494074	18	10.2	18	73	8	117	17	39	2	40	1.61
45494020--45494079	30	2.0	30	93	0	102	18	40	3	38	1.67
45494543--45494606	32	2.0	32	84	6	85	43	9	15	31	1.78
45497047--45497096	24	2.1	23	82	10	57	40	10	2	48	1.48
45499863--45499935	38	1.9	38	83	5	94	32	13	2	50	1.56
45503324--45503350	12	2.2	12	100	0	54	0	33	25	40	1.56
45505567--45505591	12	2.1	12	100	0	50	24	32	20	24	1.98
45508049--45508073	13	1.9	13	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45508290--45508338	21	2.3	21	82	6	64	26	2	0	71	0.97
45509967--45510112	9	16.2	9	96	0	265	34	30	11	22	1.90
45515673--45515712	20	2.0	20	90	0	62	50	12	10	27	1.72
45515661--45515727	34	1.9	35	87	3	100	46	11	8	32	1.72
45517468--45517501	9	3.4	10	88	12	52	64	8	0	26	1.22
45517467--45517520	19	3.1	17	82	12	56	61	5	0	33	1.19
45517647--45517705	29	2.1	27	81	12	66	67	0	5	27	1.11
45517655--45517696	20	2.0	21	86	13	61	66	0	7	26	1.17
45519256--45519949	342	2.0	341	89	4	1071	40	13	15	30	1.86
45519256--45519949	115	6.1	116	87	7	917	40	13	15	30	1.86
45520424--45521480	113	9.3	113	90	5	1475	27	16	14	41	1.87
45526176--45526247	14	5.3	14	73	9	60	81	5	8	4	0.96
45526176--45526251	40	1.9	40	81	10	93	81	5	9	3	0.96
45528385--45528555	50	3.4	49	70	9	148	29	22	25	22	1.99
45528227--45528609	100	3.8	100	82	2	421	28	22	24	23	1.99
45528704--45528976	50	5.5	50	64	8	133	29	24	24	21	1.99
45528113--45529021	467	1.9	468	92	0	1541	28	21	25	24	1.99
45528688--45529596	101	9.0	100	89	1	1203	29	21	24	24	1.99
45528688--45529596	201	4.5	201	87	2	1184	29	21	24	24	1.99
45532563--45532599	13	2.8	14	84	12	51	16	27	0	56	1.40
45537449--45538000	188	2.9	186	84	5	698	36	11	32	20	1.88
45538671--45538789	39	3.0	39	85	1	148	32	5	36	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45553810--45553902	46	2.0	46	91	4	152	29	24	10	35	1.89
45555125--45555157	17	1.9	17	93	0	57	57	15	0	27	1.38
45556826--45556866	21	1.9	21	90	5	64	63	0	2	34	1.08
45556816--45556889	31	2.4	31	86	4	105	60	0	2	36	1.11
45561490--45561518	9	3.0	10	90	10	51	62	10	0	27	1.28
45561466--45561537	19	4.2	17	79	11	60	61	4	0	34	1.16
45561680--45561718	20	2.0	20	85	10	53	56	0	5	38	1.22
45564844--45564877	13	2.5	14	85	9	52	17	11	17	52	1.73
45569997--45570186	50	3.7	50	77	7	175	24	28	19	27	1.99
45572875--45572933	24	2.5	24	85	0	73	38	1	38	20	1.63
45572888--45572925	18	2.1	18	90	0	58	36	2	42	18	1.64
45585249--45585436	94	2.0	94	100	0	376	44	8	12	34	1.73
45597590--45597616	2	13.5	2	100	0	54	51	0	0	48	1.00
45610696--45610735	21	2.1	18	86	13	53	47	5	7	40	1.54
45614746--45615181	51	8.6	51	74	8	230	31	26	15	26	1.96
45614890--45615185	102	2.9	102	86	1	407	29	26	15	28	1.96
45614750--45615181	151	2.8	151	78	7	333	31	26	15	27	1.96
45628957--45629016	30	2.0	31	90	3	95	41	0	38	20	1.52
45633926--45633950	2	12.5	2	100	0	50	52	0	0	48	1.00
45635866--45635896	14	2.2	14	94	0	53	19	16	25	38	1.92
45635862--45635903	14	2.7	16	78	17	52	21	14	23	40	1.90
45639607--45639636	12	2.5	12	88	0	51	23	0	50	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45640537--45640607	10	7.5	10	78	13	53	63	5	0	30	1.17
45640536--45640589	19	3.1	17	82	12	56	61	5	0	33	1.19
45640588--45640628	10	4.3	10	81	12	59	68	9	0	21	1.18
45640750--45640788	20	2.0	20	85	10	53	56	0	5	38	1.22
45641461--45641497	13	2.8	14	84	12	51	16	27	0	56	1.40
45652486--45653041	188	2.9	187	87	3	801	35	11	34	19	1.87
45653712--45653908	39	5.0	39	84	0	223	35	6	35	22	1.81
45654559--45655467	457	2.0	455	96	2	1682	20	17	22	39	1.92
45657946--45657997	26	2.0	26	84	0	68	59	3	0	36	1.16
45657942--45658052	10	11.8	10	68	18	51	63	3	1	30	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145