genome.fa.s2.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  50  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16328041--16328091	22	2.3	22	96	0	93	27	31	0	41	1.56
16328137--16328199	29	2.1	31	91	5	103	34	0	0	65	0.93
16329948--16329982	18	1.9	18	88	0	52	25	34	8	31	1.86
16330241--16330294	22	2.3	24	81	6	67	42	27	22	7	1.80
16330524--16331120	28	20.6	28	84	6	717	50	24	0	24	1.51
16330531--16331120	85	6.8	84	89	4	730	50	24	0	24	1.51
16330524--16331120	204	3.0	204	94	1	1017	50	24	0	24	1.51
16333246--16333585	125	2.7	126	94	0	583	32	21	15	30	1.94
16334954--16334995	22	1.9	22	95	0	75	9	21	28	40	1.84
16335079--16335286	43	4.8	43	88	2	283	24	32	19	24	1.98
16335325--16335372	20	2.2	21	82	14	62	43	0	4	52	1.20
16339114--16339299	96	2.0	93	86	7	259	45	29	1	24	1.60
16339392--16339566	89	2.0	89	86	0	242	45	28	1	25	1.61
16339017--16339562	278	2.0	275	90	3	875	44	26	1	27	1.63
16339410--16339591	89	2.0	89	84	2	231	45	25	1	26	1.63
16339594--16339637	7	6.3	7	83	0	52	27	50	0	22	1.50
16339668--16339701	15	2.3	15	90	5	52	35	29	0	35	1.58
16339749--16339792	20	2.1	21	91	4	72	47	25	0	27	1.52
16340079--16340339	41	6.4	41	85	1	353	31	22	20	25	1.98
16340407--16340513	40	2.7	39	85	1	142	20	20	23	35	1.96
16340519--16340544	12	2.2	12	100	0	52	46	30	15	7	1.74
16340844--16340876	16	2.0	17	88	5	50	39	6	0	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16345649--16345810	87	1.9	86	83	6	211	24	14	20	40	1.90
16346380--16346413	6	5.5	6	89	3	50	14	2	17	64	1.40
16354755--16354908	77	2.0	77	94	0	272	35	3	17	44	1.65
16359207--16359241	16	2.2	16	100	0	70	22	0	5	71	1.07
16366422--16366471	21	2.5	19	78	15	55	66	2	4	28	1.21
16366554--16366604	20	2.4	21	87	6	68	50	3	3	41	1.39
16366549--16366623	21	3.7	20	79	13	82	50	2	4	42	1.35
16366574--16366664	10	9.1	10	67	13	53	51	2	5	40	1.37
16366577--16366640	19	3.3	19	84	6	67	51	1	4	42	1.32
16375269--16375321	26	2.0	27	96	3	99	62	11	3	22	1.45
16376105--16376214	47	2.3	47	90	0	166	22	25	17	34	1.96
16376148--16376342	90	2.1	90	82	1	228	27	23	16	32	1.96
16377268--16377338	19	3.7	19	74	5	63	43	4	2	49	1.36
16377345--16377426	9	8.7	9	70	12	58	31	3	3	60	1.31
16377322--16377397	19	3.9	19	75	13	66	32	5	2	59	1.34
16377346--16377437	10	9.5	10	70	11	50	30	4	3	61	1.31
16383401--16383533	48	2.8	48	88	2	196	28	18	18	33	1.95
16386245--16386302	26	2.3	26	82	11	68	41	13	13	31	1.84
16389703--16389745	21	2.0	21	100	0	86	32	37	0	30	1.58
16393957--16393997	20	2.0	20	90	0	64	0	12	17	70	1.16
16404743--16404833	26	3.6	26	79	7	100	16	24	23	36	1.94
16404866--16404944	24	3.3	24	77	19	85	17	22	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16407906--16408472	44	12.9	42	72	9	348	26	19	21	32	1.97
16407905--16408466	91	6.4	90	76	9	333	26	19	20	32	1.97
16407905--16408466	85	6.4	87	73	10	308	26	19	20	32	1.97
16408090--16408485	129	3.0	128	89	4	578	25	20	21	32	1.98
16408506--16408989	99	4.9	99	90	0	734	26	22	20	30	1.98
16409886--16409935	19	2.6	19	81	12	57	0	16	2	82	0.77
16409902--16409934	15	2.1	16	94	5	59	0	15	0	84	0.61
16412434--16412554	23	5.3	23	83	8	167	21	19	27	32	1.97
16412434--16412554	45	2.7	46	88	2	181	21	19	27	32	1.97
16417190--16417261	26	2.8	26	95	0	135	30	18	6	44	1.76
16424987--16425033	23	2.0	24	91	4	78	29	6	14	48	1.69
16426070--16426103	5	6.8	5	100	0	68	41	0	0	58	0.98
16426070--16426109	15	2.7	15	92	0	53	37	5	0	57	1.21
16426255--16426322	31	2.3	31	82	5	77	39	17	13	29	1.88
16430923--16431014	37	2.4	36	84	13	107	41	2	4	52	1.33
16430942--16431071	67	2.0	65	86	8	183	40	3	4	51	1.38
16431004--16431061	28	2.0	29	86	3	82	37	5	1	55	1.33
16435314--16435487	87	2.0	87	89	2	269	39	16	8	36	1.78
16437278--16437319	21	2.0	22	95	4	77	14	9	4	71	1.28
16437282--16437323	11	3.9	11	75	6	50	11	11	7	69	1.37
16437958--16438012	24	2.2	25	83	3	67	54	3	0	41	1.18
16438633--16438780	73	2.0	74	98	1	289	45	12	2	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16441422--16441456	1	35.0	1	100	0	70	0	0	0	100	0.00
16443862--16443888	10	2.7	10	100	0	54	0	0	11	88	0.50
16472931--16472965	16	2.2	16	100	0	70	14	0	42	42	1.45
16477538--16477579	6	6.8	6	88	2	57	54	0	26	19	1.44
16492086--16492158	33	2.1	34	82	10	85	10	12	12	64	1.50
16504308--16504506	95	2.1	96	98	1	382	43	7	4	45	1.50
16504679--16504735	26	2.4	22	77	16	60	38	0	3	57	1.16
16507546--16507572	13	2.1	13	100	0	54	37	22	25	14	1.93
16507768--16507792	1	25.0	1	100	0	50	100	0	0	0	0.00
16509785--16509875	44	2.1	42	84	11	114	65	4	7	21	1.36
16510177--16510230	27	2.0	27	88	3	81	74	11	5	9	1.22
16510026--16510386	189	1.9	192	93	4	622	57	8	7	26	1.55
16510215--16510873	159	4.1	160	92	2	1089	55	9	7	27	1.59
16522115--16522162	9	5.2	9	76	14	53	43	27	10	18	1.82
16525290--16525344	25	2.2	25	81	18	71	7	18	0	74	1.04
16525304--16525343	19	2.0	20	90	4	64	5	17	0	77	0.94
16534093--16534133	19	2.2	18	86	4	55	34	17	0	48	1.47
16536594--16536655	20	3.3	20	63	28	55	35	16	1	46	1.56
16536592--16536662	35	2.0	35	97	0	133	36	16	1	45	1.57
16537204--16537272	18	4.0	18	70	14	56	33	20	0	46	1.51
16537229--16537306	41	1.9	40	86	2	111	37	25	0	37	1.56
16538388--16538416	3	9.7	3	100	0	58	68	31	0	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16540137--16540321	91	2.0	91	96	0	343	41	23	7	27	1.80
16543340--16543481	62	2.3	63	86	1	187	19	18	30	31	1.96
16555219--16555263	22	2.0	22	86	0	63	46	15	20	17	1.84
16557741--16557789	16	3.1	15	82	8	62	53	12	10	24	1.69
16563284--16563433	56	2.7	56	89	2	212	26	25	20	28	1.99
16564260--16564293	17	2.0	17	100	0	68	35	17	23	23	1.95
16570139--16570787	56	11.6	56	99	0	1289	26	28	17	26	1.98
16572984--16573264	138	2.0	138	88	1	411	46	5	7	40	1.56
16573282--16573452	75	2.3	75	87	2	236	33	14	8	42	1.77
16575903--16575951	20	2.5	20	81	15	66	12	24	6	57	1.58
16576206--16576348	50	2.9	50	80	0	160	23	27	21	27	1.99
16582195--16582239	22	2.0	22	100	0	90	37	22	8	31	1.85
16582759--16582797	16	2.4	16	86	4	51	58	7	2	30	1.39
16585409--16585465	20	2.7	21	84	13	73	28	5	15	50	1.65
16585412--16585465	10	5.2	10	86	8	65	27	3	16	51	1.61
16603542--16603586	21	2.3	19	85	11	56	37	4	33	24	1.76
16603552--16603591	21	2.1	19	86	13	55	45	5	30	20	1.72
16604021--16604054	17	2.0	17	88	0	50	17	20	8	52	1.71
16615737--16615835	42	2.4	42	84	0	135	31	23	22	23	1.99
16619141--16619168	2	14.0	2	100	0	56	50	0	0	50	1.00
16620584--16620620	19	1.9	19	100	0	74	40	5	16	37	1.71
16627871--16627927	20	2.8	20	83	0	69	31	15	21	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16630767--16630806	20	2.0	20	85	0	53	35	2	0	62	1.09
16630773--16630811	19	2.1	19	85	9	53	33	0	0	66	0.92
16631385--16631422	2	19.0	2	94	0	67	50	2	0	47	1.15
16633430--16633638	88	2.4	90	82	2	253	38	20	7	33	1.81
16634377--16634490	39	2.7	42	69	16	101	40	2	0	56	1.19
16638681--16638717	3	12.3	3	94	0	65	67	2	0	29	1.04
16639804--16640349	183	2.9	184	91	3	887	42	20	11	25	1.85
16643337--16643409	3	24.3	3	91	5	121	31	1	1	65	1.09
16647863--16647894	16	1.9	16	93	6	55	87	6	0	6	0.67
16647862--16647896	9	3.9	9	88	0	52	88	5	0	5	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145