genome.fa.s2.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  89  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29692387--29692441	28	2.0	28	96	0	101	29	14	0	56	1.39
29698701--29698743	21	2.0	21	86	0	59	51	18	6	23	1.70
29705048--29705076	11	2.7	11	94	5	51	51	0	37	10	1.36
29708216--29708272	17	3.5	17	66	9	55	12	40	29	17	1.86
29713467--29713515	25	2.0	25	88	8	73	30	22	20	26	1.98
29713480--29713528	25	2.0	25	87	0	71	32	24	14	28	1.94
29716519--29716627	25	4.5	24	79	8	107	34	6	1	56	1.35
29716537--29716620	24	3.5	24	83	4	98	34	3	2	59	1.28
29716881--29716926	24	1.9	24	90	0	74	30	8	2	58	1.40
29728895--29728937	11	3.8	11	75	6	50	76	4	2	16	1.05
29733037--29733092	29	1.9	29	88	0	85	25	8	17	48	1.76
29745976--29746027	21	2.5	21	80	0	59	44	19	7	28	1.78
29751249--29751443	40	4.9	40	89	1	293	18	30	17	33	1.94
29751249--29751432	20	9.2	20	67	11	126	18	30	18	32	1.95
29758456--29758493	15	2.5	15	86	0	58	23	36	18	21	1.95
29759782--29759835	21	2.6	21	87	0	72	40	16	7	35	1.77
29762879--29762930	26	2.0	25	81	3	59	46	0	0	53	1.00
29764475--29764528	27	2.0	27	92	0	90	29	3	9	57	1.47
29768456--29768524	22	3.1	21	77	8	66	43	15	21	18	1.88
29772989--29773044	27	2.1	27	96	0	103	19	21	12	46	1.83
29778246--29778287	22	1.9	22	85	9	59	42	4	2	50	1.36
29778653--29778709	27	2.1	27	100	0	114	17	28	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29778653--29778718	27	2.4	27	92	5	98	18	30	24	27	1.98
29778775--29778829	27	2.0	27	93	6	94	47	0	9	43	1.35
29778783--29778842	27	2.4	24	86	10	77	46	1	10	41	1.47
29785646--29785683	15	2.4	16	86	4	51	26	2	0	71	1.00
29795584--29795675	29	3.3	27	75	14	80	36	2	2	58	1.22
29795568--29795629	20	3.3	19	76	17	67	38	1	1	58	1.18
29795581--29795670	30	3.1	29	79	17	91	37	2	2	57	1.23
29796122--29796188	31	2.2	30	86	5	91	34	8	10	46	1.70
29797446--29797500	20	2.8	20	83	10	60	52	9	1	36	1.44
29798831--29798893	30	2.1	30	82	5	74	19	49	1	30	1.58
29803995--29804041	11	4.3	11	78	10	60	42	10	6	40	1.65
29804136--29804351	45	4.8	45	86	1	247	18	21	16	43	1.88
29805504--29805547	17	2.5	17	88	3	61	13	4	2	79	0.98
29820891--29820923	13	2.7	12	90	9	57	66	0	0	33	0.92
29821296--29821328	2	17.0	2	93	6	59	48	0	0	51	1.00
29823693--29823750	28	2.1	28	83	3	73	10	18	29	41	1.84
29826803--29826837	17	2.1	17	100	0	70	37	5	11	45	1.64
29827541--29827728	96	2.0	96	91	0	304	33	14	30	20	1.93
29829665--29829738	29	2.5	29	76	14	71	44	14	14	25	1.84
29829826--29829897	18	3.6	20	73	15	53	45	11	2	40	1.54
29829950--29830004	24	2.3	24	87	6	76	49	7	1	41	1.41
29831872--29831903	3	10.7	3	93	0	55	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29834693--29834785	46	2.0	45	87	6	134	23	5	27	43	1.76
29853607--29853829	43	5.2	43	64	14	136	29	23	22	24	1.99
29853546--29854237	88	7.9	87	89	2	645	27	22	24	25	2.00
29853918--29854137	44	5.0	44	65	14	148	25	23	25	25	2.00
29853953--29854179	44	5.2	44	67	10	149	26	25	23	24	2.00
29854334--29854486	52	3.1	52	64	19	146	33	18	20	28	1.96
29854253--29854510	95	2.7	95	98	0	498	30	19	20	29	1.97
29858818--29858868	12	4.1	12	72	18	50	49	1	1	47	1.24
29858821--29858862	21	2.0	21	85	0	57	52	2	2	42	1.27
29859345--29859384	19	2.1	19	85	0	53	35	2	7	55	1.42
29860574--29860598	4	6.2	4	100	0	50	24	0	0	76	0.80
29867690--29868430	188	3.9	188	93	0	1196	28	24	15	31	1.95
29876099--29876167	26	2.7	26	83	0	84	21	24	21	31	1.98
29877687--29877725	19	2.0	20	90	5	62	48	23	5	23	1.70
29881009--29881439	116	3.7	116	87	8	576	32	19	15	32	1.93
29881009--29881444	238	1.9	230	86	6	617	33	19	14	32	1.92
29882389--29882448	3	20.0	3	100	0	120	66	0	0	33	0.92
29885376--29885400	4	6.2	4	100	0	50	76	0	0	24	0.80
29890886--29891013	60	2.1	60	84	2	168	35	19	32	11	1.88
29890903--29891033	60	2.2	60	80	2	147	36	20	32	10	1.87
29891105--29891131	2	13.5	2	100	0	54	51	0	0	48	1.00
29897530--29897581	24	2.2	24	85	0	68	32	0	1	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29900540--29900572	16	2.1	16	100	0	66	36	6	30	27	1.81
29900554--29900648	44	2.1	45	86	5	131	32	5	27	34	1.79
29901033--29901172	47	3.0	47	70	17	148	46	4	2	46	1.37
29901010--29901133	44	2.8	44	72	17	119	47	2	3	46	1.31
29911574--29911611	15	2.5	16	87	12	62	36	10	2	50	1.51
29915038--29915089	24	2.2	24	100	0	104	30	23	26	19	1.98
29922302--29922363	25	2.6	25	84	5	74	51	0	1	46	1.10
29931514--29931627	43	2.6	43	84	4	140	27	16	24	31	1.96
29939790--29939827	18	2.1	19	85	5	51	44	2	0	52	1.14
29941755--29941808	23	2.4	23	87	6	76	50	7	5	37	1.54
29941971--29942271	149	2.0	150	99	0	595	35	5	11	47	1.64
29946880--29946925	21	2.2	20	84	3	56	47	21	8	21	1.77
29947266--29947341	31	2.6	28	78	10	71	59	5	0	35	1.20
29947317--29947351	17	2.1	17	89	5	54	62	2	0	34	1.10
29951174--29951220	20	2.3	20	85	7	60	51	4	4	40	1.41
29957619--29957686	31	2.2	31	84	5	84	38	11	16	33	1.85
29970363--29970462	21	4.8	21	76	4	94	19	23	15	43	1.88
29970352--29970431	42	1.9	42	89	0	124	17	22	15	45	1.85
29970369--29970489	42	2.9	42	81	2	127	18	22	14	44	1.86
29970333--29970490	63	2.5	63	73	2	156	18	22	13	44	1.86
29971099--29971128	14	2.1	14	100	0	60	60	6	0	33	1.23
29972686--29973342	50	13.2	50	72	6	487	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29972672--29973342	100	6.8	98	89	2	902	31	21	21	26	1.98
29974238--29974277	6	6.7	6	100	0	80	15	0	0	85	0.61
29974966--29975018	3	17.7	3	96	0	97	33	1	0	64	1.05
29976237--29976280	21	2.1	21	100	0	88	38	9	13	38	1.77
29976236--29976291	21	2.8	19	87	10	85	37	8	16	37	1.80
29976249--29976314	23	3.0	23	82	12	77	37	6	16	39	1.74
29976280--29976324	23	2.0	23	86	4	65	33	4	15	46	1.66
29977889--29977941	21	2.5	21	76	11	54	24	3	1	69	1.15
29978976--29979142	87	1.9	87	83	2	219	39	18	8	32	1.82
29979491--29979563	8	8.9	8	72	10	58	24	4	1	69	1.13
29979460--29979563	26	4.1	26	78	14	103	25	5	0	67	1.19
29985009--29985122	60	1.9	61	81	1	140	42	12	6	38	1.67
29985580--29985619	19	2.1	18	86	13	53	67	2	12	17	1.33
29986459--29986489	16	1.9	16	93	0	53	41	0	6	51	1.27
29994433--29994492	20	3.0	20	80	0	66	45	10	8	36	1.68
29996919--29996967	12	4.3	12	78	19	52	69	2	0	28	1.00
29996937--29996970	13	2.7	13	86	4	52	70	2	0	26	1.01
29997479--29997503	6	4.2	6	100	0	50	48	0	0	52	1.00
29997813--29997845	17	1.9	17	88	11	50	72	3	3	21	1.11
29998252--29998294	18	2.4	17	81	11	50	37	2	6	53	1.41
29998264--29998315	18	2.8	20	80	16	58	30	3	1	63	1.23
29998322--29998392	17	3.8	19	82	14	78	30	7	0	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29998390--29998437	15	2.8	17	75	18	55	41	4	0	54	1.20
29998439--29998510	29	2.4	28	82	15	81	25	4	5	65	1.32
29998453--29998510	29	2.0	31	86	10	86	22	5	3	68	1.24
29998492--29998568	38	2.1	36	82	4	91	22	3	7	66	1.34
30002340--30002382	21	2.1	20	82	4	50	46	0	2	51	1.13
30002359--30002413	27	2.1	26	83	10	67	52	0	0	47	1.00
30007039--30007072	15	2.3	15	90	10	52	5	5	52	35	1.50
30010985--30011210	111	2.0	112	99	0	445	41	10	7	40	1.69
30022493--30022561	33	2.1	33	91	0	111	18	17	13	50	1.77
30022702--30022731	15	2.0	15	93	0	51	26	0	16	56	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145