genome.fa.s2.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  91  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30368076--30368127	22	2.4	22	83	0	68	15	15	17	51	1.76
30370036--30370225	98	1.9	98	96	0	353	37	25	11	25	1.89
30381986--30382030	17	2.4	19	85	14	67	11	15	31	42	1.82
30382474--30382525	25	2.1	24	89	3	77	36	19	25	19	1.95
30383387--30383769	192	2.0	193	99	0	759	36	12	17	33	1.87
30386204--30386234	3	10.3	3	100	0	62	32	0	0	67	0.91
30387387--30387421	18	1.9	18	100	0	70	37	0	5	57	1.23
30387389--30387432	18	2.4	18	88	7	63	38	0	4	56	1.20
30387566--30387600	16	2.2	17	90	10	56	22	0	5	71	1.07
30390007--30390059	25	2.1	25	82	0	61	30	11	15	43	1.81
30397075--30397144	33	2.3	31	83	14	83	37	5	20	37	1.76
30397392--30397486	5	19.0	5	73	12	52	35	6	18	38	1.77
30400397--30400435	20	2.0	20	89	0	60	25	15	20	38	1.92
30404876--30404917	19	2.2	20	91	4	68	73	11	4	9	1.22
30408193--30408226	16	2.1	16	100	0	68	44	29	26	0	1.55
30413399--30413436	18	2.1	18	100	0	76	60	0	34	5	1.19
30413957--30413983	12	2.2	12	100	0	54	25	7	33	33	1.84
30420577--30420635	19	3.0	20	72	20	52	40	5	5	49	1.47
30420642--30420682	20	2.0	21	90	4	66	46	21	0	31	1.52
30422835--30422859	8	3.1	8	100	0	50	76	0	0	24	0.80
30426421--30426481	27	2.3	27	88	5	97	45	22	14	16	1.84
30426768--30426825	28	2.1	27	90	3	89	22	25	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30426788--30426858	33	2.1	34	86	2	99	22	23	25	28	2.00
30429627--30429672	15	3.1	15	79	17	51	80	0	2	17	0.81
30434638--30434674	3	12.3	3	94	0	65	29	0	2	67	1.04
30435065--30435128	29	2.2	28	83	8	76	31	9	1	57	1.40
30435062--30435112	10	5.2	10	75	13	52	29	11	1	56	1.46
30437828--30437874	24	1.9	24	86	4	67	63	29	0	6	1.19
30438669--30438735	32	2.1	32	82	0	80	25	37	20	16	1.93
30439730--30440501	385	2.0	385	100	0	1544	26	15	23	34	1.95
30444027--30444051	13	1.9	13	100	0	50	16	24	16	44	1.86
30447149--30447186	20	1.9	20	88	0	58	39	15	2	42	1.61
30447228--30447304	20	3.9	19	79	6	82	33	10	5	50	1.59
30454014--30454071	26	2.1	28	93	6	102	41	0	6	51	1.28
30454013--30454077	26	2.5	25	85	11	87	41	0	7	50	1.31
30457945--30457997	21	2.5	21	81	9	63	30	30	1	37	1.68
30474945--30475139	51	3.9	50	78	3	203	25	17	27	29	1.97
30474945--30475139	101	1.9	101	88	3	293	25	17	27	29	1.97
30474949--30475139	102	1.9	100	87	3	258	25	17	27	29	1.97
30479237--30479334	49	2.0	49	97	0	187	23	20	25	30	1.98
30480793--30480835	21	2.0	22	86	4	61	72	11	2	13	1.22
30488416--30488464	18	2.8	18	87	3	64	46	4	6	42	1.47
30495883--30495922	21	1.9	21	84	0	53	37	32	10	20	1.85
30495932--30495996	21	3.2	20	75	14	69	23	1	33	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30495933--30496042	34	3.2	33	69	14	78	21	1	35	40	1.64
30503852--30503888	18	2.1	18	100	0	74	16	32	24	27	1.96
30504031--30504390	154	2.4	155	82	9	438	41	10	4	44	1.58
30505188--30505551	42	8.7	42	89	2	509	34	22	19	24	1.97
30505188--30505551	125	2.9	126	87	0	534	34	22	19	24	1.97
30505188--30505551	167	2.2	167	86	2	525	34	22	19	24	1.97
30505965--30506025	8	7.8	8	80	14	65	0	9	4	85	0.74
30505965--30506025	7	8.9	7	84	12	65	0	9	4	85	0.74
30505965--30506025	21	3.0	21	85	7	81	0	9	4	85	0.74
30508746--30508937	50	3.8	49	83	4	215	27	16	25	30	1.97
30516444--30516641	51	3.9	50	83	3	236	25	17	26	30	1.97
30516444--30516631	101	1.9	102	85	3	263	25	17	27	29	1.97
30530998--30531062	25	2.6	25	78	4	69	36	13	18	30	1.90
30538276--30538747	150	3.2	144	80	9	477	44	10	4	41	1.58
30538354--30538781	150	2.8	148	86	6	561	44	10	4	40	1.58
30539123--30539157	9	3.9	9	84	0	52	51	0	14	34	1.42
30546954--30546988	17	2.1	16	89	5	52	51	2	8	37	1.47
30557821--30557854	16	2.2	15	89	5	50	44	0	0	55	0.99
30558523--30558576	25	2.1	27	86	6	76	33	3	3	59	1.33
30570413--30570482	34	2.1	34	91	0	113	55	21	11	11	1.66
30572138--30572182	23	2.0	23	95	0	81	40	22	8	28	1.84
30573641--30573728	44	2.0	44	95	0	158	29	11	18	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30582463--30582491	12	2.3	13	94	5	51	65	6	6	20	1.40
30589991--30590046	7	8.0	7	100	0	112	0	14	0	85	0.59
30591379--30591423	17	2.6	17	76	13	56	42	17	11	28	1.84
30591776--30591813	19	2.0	20	85	10	53	57	0	5	36	1.21
30591981--30592014	15	2.3	15	89	0	50	61	2	14	20	1.46
30593642--30593687	24	1.9	24	100	0	92	47	26	4	21	1.69
30593641--30593698	24	2.4	24	85	5	82	50	27	3	18	1.63
30598332--30598665	90	3.7	89	100	0	632	42	7	7	42	1.61
30600921--30600977	29	2.0	28	83	10	71	31	3	7	57	1.42
30603809--30603853	23	2.0	23	100	0	90	51	8	17	22	1.73
30603805--30603849	11	4.0	11	82	5	63	48	13	17	20	1.80
30604348--30604410	30	2.1	30	94	5	110	36	25	6	31	1.81
30610665--30610694	15	2.0	15	100	0	60	26	20	0	53	1.46
30612363--30612439	38	2.0	39	97	2	147	36	0	12	50	1.41
30612367--30612449	38	2.2	38	91	2	130	36	0	10	53	1.36
30612896--30613042	45	3.2	45	82	2	168	40	7	4	47	1.51
30614071--30614123	27	1.9	28	81	11	65	22	11	11	54	1.67
30616601--30616677	26	3.1	25	81	9	70	23	14	24	37	1.92
30616637--30616707	23	3.0	23	89	2	97	18	5	28	47	1.71
30616642--30616723	24	3.5	23	86	5	101	20	6	25	47	1.73
30616901--30616991	32	2.9	32	83	1	94	17	23	23	36	1.95
30617120--30617184	22	3.0	21	69	13	51	20	16	15	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30623297--30623333	19	2.0	19	89	5	58	67	2	0	29	1.04
30624070--30624670	299	2.0	299	97	0	1121	32	19	15	32	1.93
30626541--30626568	14	2.0	14	100	0	56	35	7	0	57	1.26
30645617--30645656	21	2.0	20	90	5	62	72	2	12	12	1.22
30646324--30646424	51	2.0	51	96	0	184	33	12	21	31	1.91
30646739--30647006	100	2.7	99	91	4	414	27	22	25	25	2.00
30646753--30647022	50	5.4	50	72	3	220	28	20	25	24	1.99
30647016--30648076	132	8.0	132	85	4	1225	29	19	23	27	1.98
30647794--30647978	44	4.2	44	66	10	126	28	18	25	27	1.98
30651895--30651937	4	10.8	4	94	0	77	20	0	2	76	0.89
30652228--30652252	2	12.5	2	100	0	50	48	0	0	52	1.00
30658167--30658272	20	5.3	20	67	8	81	34	17	33	14	1.90
30658170--30658290	40	3.0	40	84	4	181	33	18	31	16	1.93
30660687--30660747	28	2.2	27	77	5	68	29	24	26	19	1.99
30660937--30661331	32	12.4	32	89	0	531	40	20	18	21	1.92
30661322--30661378	26	2.2	26	83	0	69	31	29	24	14	1.94
30661375--30661430	27	2.1	27	87	12	80	30	23	25	21	1.99
30661594--30661747	27	5.7	27	84	1	193	24	19	20	35	1.96
30663793--30663848	30	1.9	28	85	7	76	42	0	0	57	0.99
30666110--30666443	51	6.6	50	80	6	334	30	25	14	29	1.94
30666101--30666443	102	3.4	102	88	3	471	30	25	14	29	1.95
30670067--30670164	3	32.3	3	73	13	67	32	7	2	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30670067--30670164	43	2.3	42	83	10	119	32	7	2	58	1.37
30670672--30670727	27	2.1	26	83	3	67	25	7	7	60	1.48
30683959--30684038	3	28.0	3	75	20	66	68	1	3	26	1.13
30683957--30684045	25	3.5	26	75	21	84	69	1	3	25	1.11
30683957--30684038	27	3.3	24	75	24	82	69	1	3	25	1.12
30684211--30684254	23	2.0	23	86	4	63	34	2	59	4	1.30
30692507--30692535	11	2.5	12	88	11	51	41	6	0	51	1.28
30695775--30695827	21	2.5	21	78	6	63	35	33	3	26	1.75
30707565--30707607	14	2.9	15	82	10	52	18	2	0	79	0.85
30707546--30707600	22	2.5	23	76	8	60	21	5	0	72	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145