genome.fa.s2.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  121  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40369442--40369472	15	2.1	15	93	0	53	35	45	0	19	1.51
40369453--40369634	92	2.0	92	93	4	314	46	26	3	23	1.67
40369914--40370053	41	3.5	40	86	4	167	28	31	17	22	1.96
40373391--40373484	37	2.5	37	80	0	107	37	15	17	29	1.91
40379080--40379140	23	2.7	23	78	0	77	29	29	8	32	1.86
40384200--40384236	9	4.1	9	92	0	65	45	13	10	29	1.77
40384833--40384895	29	2.2	28	82	5	72	30	14	14	41	1.85
40385174--40385454	125	2.3	124	88	4	415	31	16	20	32	1.94
40388635--40389292	29	22.0	29	81	11	610	31	0	23	44	1.58
40388907--40388935	14	2.1	14	100	0	58	20	0	20	58	1.39
40388878--40389002	37	3.2	41	86	8	124	27	0	25	47	1.53
40388891--40389008	36	3.2	36	89	4	157	29	0	24	45	1.53
40388894--40389002	37	2.9	37	91	4	166	27	0	26	45	1.54
40389068--40389111	22	2.0	22	95	4	79	31	0	25	43	1.55
40392216--40392244	5	5.8	5	100	0	58	20	20	17	41	1.90
40392467--40392524	22	2.7	21	86	7	80	34	3	18	43	1.68
40396158--40396321	74	2.2	75	95	1	278	45	6	6	42	1.55
40396195--40396350	74	2.1	74	82	7	183	46	7	7	37	1.61
40398490--40398552	31	2.0	31	100	0	126	22	22	12	42	1.87
40409291--40409435	77	1.9	77	97	0	272	35	16	6	40	1.75
40409587--40409684	28	3.5	28	75	6	108	47	16	18	17	1.82
40412113--40412153	21	2.0	21	85	0	55	14	17	21	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40414387--40414428	21	1.9	23	85	9	61	28	35	0	35	1.58
40416670--40416728	20	3.0	20	72	16	61	38	3	0	57	1.15
40426303--40426334	9	3.6	9	91	0	55	25	9	25	40	1.85
40426300--40426361	18	3.4	18	86	8	90	25	6	24	43	1.78
40427158--40427195	19	2.0	19	94	0	67	26	7	31	34	1.85
40429504--40429542	20	2.0	20	100	0	78	41	12	5	41	1.65
40439232--40439275	4	11.0	4	90	0	70	47	22	2	27	1.63
40439233--40439282	12	4.2	12	92	0	64	44	22	6	28	1.76
40440362--40440439	23	3.4	23	83	3	95	15	15	28	41	1.87
40447172--40447203	14	2.3	14	94	0	55	84	0	15	0	0.63
40447272--40447346	29	2.6	28	81	14	82	26	13	12	48	1.77
40478960--40479017	18	3.2	18	78	4	62	39	1	0	58	1.08
40478948--40479038	37	2.5	37	77	8	89	41	2	1	54	1.19
40484269--40484402	67	2.0	67	92	0	223	26	12	6	53	1.63
40484394--40484486	27	3.7	26	69	16	70	31	12	18	37	1.88
40487013--40487059	17	3.1	16	85	11	55	48	0	8	42	1.33
40489785--40489840	22	2.5	23	88	2	78	58	16	3	21	1.52
40491628--40491694	26	2.6	26	95	0	116	38	19	20	20	1.93
40498318--40498355	19	2.0	20	89	5	60	39	2	5	52	1.38
40500627--40500866	41	5.8	41	86	3	277	25	26	20	28	1.99
40507508--40507755	41	6.0	41	88	3	320	24	27	20	28	1.99
40507508--40507740	123	1.9	124	88	2	353	24	27	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40508136--40508313	78	2.3	77	78	6	191	42	17	2	37	1.62
40508387--40508687	153	1.9	156	81	9	357	43	15	3	37	1.64
40508488--40508687	78	2.6	78	95	1	357	43	14	3	38	1.63
40510999--40511307	43	7.3	43	81	4	322	21	17	30	30	1.97
40514222--40514253	13	2.5	13	100	0	64	0	15	46	37	1.46
40516466--40516506	10	4.1	10	87	6	57	51	0	0	48	1.00
40516466--40516515	20	2.5	20	81	9	59	52	0	0	48	1.00
40516937--40516992	17	3.3	17	74	20	55	50	0	3	46	1.19
40517228--40517267	20	2.0	20	90	0	62	42	2	27	27	1.68
40521804--40521855	5	10.2	5	82	12	61	23	25	15	36	1.93
40525091--40525155	16	3.9	17	70	9	53	46	30	3	20	1.66
40531445--40531819	186	2.0	185	92	0	615	27	13	16	42	1.85
40539227--40539280	20	2.6	21	72	16	58	42	12	7	37	1.72
40552837--40552918	41	2.0	41	97	0	155	42	2	8	46	1.47
40556469--40556555	20	4.3	20	80	10	97	47	17	8	27	1.75
40556459--40556555	40	2.4	40	77	10	108	47	15	7	29	1.72
40562958--40563006	23	2.1	23	96	0	89	18	32	4	44	1.68
40567234--40567282	23	2.1	23	96	0	89	18	32	4	44	1.68
40568927--40568976	27	1.9	27	84	8	68	56	18	2	24	1.52
40569070--40569210	75	1.9	75	83	5	187	44	11	14	29	1.80
40569075--40569228	75	2.1	75	80	7	170	44	11	13	29	1.79
40573705--40573797	12	7.3	12	70	10	51	6	17	1	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40573709--40573783	6	12.0	6	73	18	64	6	16	1	76	1.07
40573739--40573807	24	3.0	23	79	12	79	7	18	1	72	1.15
40579825--40579873	17	2.8	18	75	6	55	24	4	4	67	1.26
40581012--40581151	75	1.9	75	84	3	192	42	11	16	30	1.83
40581011--40581170	75	2.1	75	81	2	187	43	13	14	28	1.84
40581759--40582120	71	5.1	71	77	3	307	35	24	16	23	1.95
40581759--40582120	142	2.5	142	79	4	363	35	24	16	23	1.95
40582148--40582272	64	2.0	64	85	3	171	36	23	16	24	1.94
40582214--40583006	71	11.0	71	76	6	484	35	24	16	23	1.95
40582118--40583006	142	6.2	142	76	6	648	34	24	16	24	1.95
40582212--40582702	213	2.3	213	83	1	617	36	25	15	23	1.94
40582679--40582723	21	2.1	21	95	0	81	24	26	15	33	1.95
40583071--40583303	68	3.4	68	83	4	326	28	30	16	24	1.97
40591233--40592722	502	3.0	502	97	0	2784	30	15	14	39	1.87
40592861--40593257	87	4.6	85	79	8	378	29	14	12	43	1.82
40592861--40593172	173	1.8	172	82	4	405	30	14	11	43	1.81
40596495--40596534	14	2.8	14	82	17	55	15	2	0	82	0.77
40597092--40597117	3	8.7	3	100	0	52	30	0	0	69	0.89
40597144--40597219	27	2.8	26	71	11	64	31	11	7	48	1.68
40601960--40602019	12	4.9	12	72	11	50	73	11	5	10	1.24
40602881--40602914	7	5.0	7	85	7	52	70	2	14	11	1.27
40602885--40602914	13	2.3	13	94	0	51	73	3	13	10	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40604332--40604799	219	2.1	219	90	2	735	30	19	22	26	1.98
40604642--40605017	85	4.3	86	72	10	248	31	18	20	29	1.96
40604635--40605040	129	3.1	129	95	0	697	31	19	19	29	1.96
40604419--40604993	44	13.2	43	70	11	345	31	19	21	28	1.97
40605023--40605151	44	2.9	43	73	7	116	31	22	23	22	1.98
40606183--40606240	6	9.8	6	89	10	93	15	0	0	84	0.62
40606798--40606823	3	8.7	3	100	0	52	30	0	0	69	0.89
40621649--40621673	2	12.5	2	100	0	50	48	0	0	52	1.00
40627535--40627565	2	16.0	2	93	6	55	51	0	0	48	1.00
40628648--40628692	20	2.2	21	84	11	58	26	0	4	68	1.08
40628898--40628937	19	2.2	19	90	4	64	55	0	0	45	0.99
40628929--40628977	22	2.3	22	86	10	66	59	2	0	38	1.09
40628914--40628970	28	2.0	27	87	12	80	61	1	0	36	1.07
40628914--40628988	31	2.6	29	81	10	82	57	1	0	41	1.07
40628929--40628990	22	2.9	22	78	7	65	54	1	0	43	1.09
40633504--40633537	17	2.0	17	88	0	50	67	2	0	29	1.05
40634965--40634992	6	4.7	6	100	0	56	0	0	50	50	1.00
40636260--40636298	15	2.5	17	76	23	50	20	23	0	56	1.42
40636532--40636569	14	2.7	14	92	8	60	36	2	18	42	1.64
40636553--40636590	20	1.9	19	94	5	67	31	2	15	50	1.58
40636538--40636602	34	1.9	33	87	9	96	33	4	15	46	1.66
40637752--40637821	35	2.0	35	94	0	122	50	18	4	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40639473--40639538	22	3.1	22	70	16	75	30	6	10	53	1.60
40639465--40639530	20	3.2	20	70	17	64	36	3	9	51	1.49
40639466--40639545	42	1.9	41	92	2	133	32	6	10	51	1.60
40650022--40650073	24	2.2	24	85	0	68	38	3	7	50	1.50
40650039--40650084	24	1.9	24	86	8	67	41	4	6	47	1.49
40654426--40654477	24	2.2	24	85	0	68	34	3	11	50	1.57
40654443--40654489	24	2.0	24	87	8	69	38	4	10	46	1.58
40655776--40655854	39	2.0	39	90	0	122	18	18	6	55	1.63
40661050--40661265	51	4.3	51	89	1	310	32	15	24	27	1.95
40661050--40661265	102	2.1	101	91	0	342	32	15	24	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145