genome.fa.s2.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  93  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31100342--31100430	31	2.8	32	84	5	119	34	19	21	24	1.96
31100557--31100604	19	2.5	19	80	13	53	33	10	16	39	1.83
31105955--31106005	23	2.2	23	85	0	66	47	7	9	35	1.66
31105968--31106015	23	2.1	23	88	0	69	41	10	10	37	1.74
31105974--31106021	23	2.0	23	84	4	60	47	8	8	35	1.64
31115014--31115577	59	9.7	59	81	7	589	28	24	13	33	1.93
31115253--31115464	28	7.2	29	68	16	116	28	27	12	31	1.93
31115280--31115495	31	7.3	31	68	15	143	28	28	12	31	1.92
31115023--31115463	237	1.9	237	85	2	618	28	24	12	33	1.93
31115280--31115477	28	6.7	29	69	17	122	27	28	11	31	1.92
31115445--31115546	51	2.0	51	82	3	125	33	22	10	33	1.89
31115543--31115616	29	2.6	29	84	0	85	21	21	14	41	1.89
31115986--31116040	15	3.7	15	95	0	101	32	23	12	30	1.92
31117190--31117713	261	2.0	262	92	0	861	32	13	16	37	1.89
31123311--31123535	111	2.0	112	97	1	425	32	13	6	47	1.69
31124050--31124090	21	2.0	21	100	0	82	43	9	7	39	1.65
31135242--31135397	44	3.5	44	79	4	170	30	24	17	26	1.97
31135449--31135928	131	3.7	131	92	1	775	23	23	21	30	1.99
31135605--31135784	44	4.1	42	65	17	98	26	22	21	29	1.99
31137018--31137067	21	2.4	21	90	6	75	14	14	0	72	1.14
31137018--31137067	7	7.1	7	82	17	68	14	14	0	72	1.14
31146965--31147039	28	2.7	29	87	6	102	13	12	0	74	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31146965--31147031	7	9.6	7	89	10	86	14	11	0	73	1.11
31146966--31147040	14	5.4	13	78	13	62	12	12	0	76	1.04
31147769--31148020	120	2.1	120	86	3	348	14	28	31	25	1.95
31148402--31148496	7	12.7	7	72	18	50	4	14	2	78	0.99
31148441--31148478	20	1.9	19	85	15	51	10	2	2	84	0.83
31148402--31148499	21	4.7	21	73	14	62	5	14	2	78	1.01
31154632--31154819	30	6.3	30	74	5	121	27	22	12	37	1.91
31154687--31154846	30	5.3	30	76	7	128	23	26	12	37	1.90
31164269--31164330	25	2.5	25	94	0	106	29	22	11	37	1.89
31167688--31168169	129	3.7	129	93	0	802	32	20	23	23	1.98
31168167--31168402	44	5.5	44	73	7	182	26	16	25	31	1.96
31168145--31168402	129	2.0	129	93	1	446	27	17	24	30	1.97
31168162--31168439	129	2.2	129	90	1	414	27	18	24	30	1.98
31175913--31176541	106	5.9	107	83	1	721	34	15	16	33	1.90
31187967--31187995	13	2.2	13	100	0	58	24	17	20	37	1.93
31196956--31197063	25	4.3	25	70	12	69	25	14	26	32	1.95
31197062--31197200	72	1.9	72	86	1	199	24	17	25	32	1.97
31199634--31199669	18	1.9	19	88	5	56	36	2	5	55	1.38
31203335--31203472	39	3.5	39	80	5	154	28	5	21	44	1.75
31204814--31204881	23	3.0	21	73	14	55	19	2	8	69	1.28
31209110--31209218	48	2.3	45	81	4	110	31	24	18	25	1.98
31216049--31216076	14	2.0	14	100	0	56	42	0	28	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31222826--31222852	7	3.9	7	100	0	54	29	0	0	70	0.88
31224287--31224331	19	2.5	19	79	17	51	60	0	2	37	1.09
31224287--31224333	18	2.6	19	83	6	62	57	0	4	38	1.18
31225644--31225684	21	1.9	22	90	5	66	36	0	0	63	0.95
31228354--31228405	24	2.2	24	85	0	68	53	9	3	32	1.51
31232278--31232395	25	4.8	25	69	8	82	35	18	25	20	1.95
31247682--31247803	37	3.3	38	79	8	153	37	33	13	14	1.86
31251937--31251986	9	5.6	9	92	0	82	42	24	10	24	1.85
31251937--31251986	18	2.8	18	96	0	91	42	24	10	24	1.85
31251994--31252043	26	2.0	25	88	4	73	24	2	6	68	1.23
31251994--31252043	12	3.8	14	76	12	61	24	2	6	68	1.23
31252071--31252124	18	2.9	18	86	2	72	11	1	46	40	1.50
31252786--31252894	43	2.5	44	86	2	150	31	14	22	32	1.94
31255679--31255730	24	2.2	24	92	0	86	44	1	30	23	1.64
31255803--31255912	41	2.6	42	81	7	125	23	21	22	31	1.98
31258598--31258914	44	7.4	44	83	11	256	29	25	17	27	1.97
31258684--31258932	44	5.7	44	89	1	376	28	25	18	26	1.98
31261781--31261813	9	3.8	9	88	4	50	42	15	21	21	1.89
31263495--31263548	19	2.7	20	91	8	83	35	16	11	37	1.84
31265438--31265496	31	1.9	31	92	0	100	42	6	10	40	1.65
31267336--31267393	29	2.0	28	83	9	73	25	3	1	68	1.14
31268811--31268846	15	2.5	15	90	4	56	27	0	5	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31270308--31270341	10	3.4	10	100	0	68	79	0	0	20	0.73
31275637--31275684	26	1.9	25	83	8	62	39	2	0	58	1.10
31280082--31280170	24	3.5	26	69	17	71	40	4	4	50	1.43
31303378--31303420	2	22.5	2	86	9	63	0	46	0	53	1.00
31306012--31306046	12	2.9	12	95	0	61	0	5	14	80	0.89
31306014--31306051	12	3.2	12	92	0	58	0	5	13	81	0.85
31306113--31306171	29	2.1	27	84	9	75	27	13	15	44	1.84
31306515--31306670	52	3.0	51	92	1	258	25	10	26	37	1.89
31312521--31312581	21	2.9	21	76	9	61	19	0	29	50	1.48
31322867--31322904	17	2.2	17	90	9	60	68	10	0	21	1.19
31325519--31325595	38	2.0	38	92	0	127	33	25	12	27	1.93
31330726--31330773	24	2.0	24	84	8	62	66	0	2	31	1.03
31333182--31333214	9	3.7	9	91	0	57	3	0	6	90	0.52
31337254--31337287	18	1.9	17	88	5	50	61	0	0	38	0.96
31337567--31337604	18	2.0	20	85	15	53	65	7	5	21	1.38
31345165--31345384	109	2.0	110	99	0	433	38	10	13	36	1.80
31351671--31351744	23	3.2	22	70	16	60	58	8	4	29	1.46
31353672--31353696	13	1.9	13	100	0	50	32	0	16	52	1.44
31356823--31356848	13	2.0	13	100	0	52	46	0	23	30	1.53
31368575--31368621	23	2.0	23	100	0	94	25	4	21	48	1.68
31375397--31375423	14	1.9	14	100	0	54	25	7	22	44	1.79
31384031--31384177	50	2.9	51	81	5	190	26	17	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31384091--31384170	26	3.1	26	63	28	62	22	15	30	32	1.94
31384180--31384265	45	1.9	45	92	0	145	24	17	24	33	1.96
31391484--31391536	26	2.0	26	85	0	70	28	15	28	28	1.96
31398302--31398401	29	3.5	29	95	1	175	36	14	0	50	1.43
31398482--31398548	27	2.5	27	92	0	107	26	29	28	14	1.96
31398675--31398713	19	2.0	21	85	10	55	25	0	7	66	1.18
31398848--31398916	28	2.4	29	85	4	95	39	4	13	43	1.63
31399009--31399039	12	2.6	12	94	0	53	19	0	19	61	1.35
31405210--31405247	19	2.0	19	85	10	51	60	7	0	31	1.25
31405265--31405340	22	3.4	22	73	20	68	0	32	0	67	0.91
31405278--31405320	18	2.4	18	80	3	52	0	30	0	69	0.88
31405378--31405448	27	2.6	27	93	0	115	15	26	28	29	1.96
31405378--31405457	27	3.0	27	86	0	79	16	27	27	28	1.97
31405536--31405588	22	2.3	22	87	12	72	50	0	11	37	1.38
31405521--31405613	29	3.5	28	79	20	119	47	0	12	39	1.42
31406169--31406226	23	2.5	23	82	0	71	20	15	13	50	1.78
31407506--31407571	32	2.1	32	97	0	123	27	13	15	43	1.84
31413628--31413764	42	3.3	42	83	8	188	16	32	23	27	1.96
31415309--31415422	60	1.9	60	92	0	192	39	19	20	21	1.93
31421735--31421782	18	2.7	18	80	6	53	31	6	33	29	1.82
31421716--31421793	39	2.1	36	81	11	86	34	3	32	29	1.76
31422231--31422264	17	2.0	17	94	0	59	20	17	8	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31425098--31425166	20	3.5	19	69	15	59	30	17	34	17	1.93
31425097--31425176	40	2.0	40	85	0	106	30	17	32	20	1.95
31433734--31433806	32	2.3	32	97	0	137	35	15	10	38	1.82
31436530--31436590	20	3.1	20	72	13	72	37	18	26	18	1.93
31436440--31436597	40	4.0	40	84	5	205	36	15	28	19	1.93
31438812--31439042	29	7.9	29	82	6	234	24	25	13	36	1.92
31438819--31439044	87	2.6	86	85	6	301	24	24	13	37	1.92
31438801--31439033	58	4.0	58	83	5	274	24	25	13	37	1.91
31440348--31440417	35	2.0	36	85	2	97	40	20	10	30	1.85
31443467--31443531	26	2.5	26	84	0	85	35	24	16	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145