genome.fa.s2.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  22  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7057605--7057629	10	2.5	10	100	0	50	72	16	0	12	1.13
7060023--7060066	2	22.0	2	100	0	88	50	0	0	50	1.00
7090685--7090787	19	5.0	20	72	15	77	53	0	6	39	1.28
7090744--7090787	20	2.3	19	88	11	63	45	0	6	47	1.29
7090764--7090812	16	3.1	16	78	0	53	57	0	4	38	1.18
7090789--7090843	20	2.7	19	76	18	58	63	0	3	32	1.12
7094729--7094835	30	3.6	30	85	2	117	29	27	16	26	1.97
7098056--7098094	17	2.6	14	84	15	51	56	2	2	38	1.27
7098078--7098114	19	1.9	19	94	0	65	62	0	0	37	0.96
7098951--7098997	18	2.8	16	84	12	58	78	2	4	14	0.99
7100354--7100500	78	1.9	79	97	1	278	38	8	3	49	1.51
7103447--7103713	41	6.8	39	70	14	149	19	19	27	33	1.96
7103493--7103699	114	1.8	113	87	7	312	18	19	25	35	1.95
7120827--7120878	24	2.2	24	92	0	86	34	1	7	55	1.39
7123244--7123561	138	2.3	135	82	4	379	33	16	22	27	1.95
7124338--7124368	16	1.9	16	93	0	53	51	3	0	45	1.17
7142498--7142613	34	3.4	34	78	5	117	43	13	11	31	1.80
7142701--7142743	5	8.6	5	100	0	86	60	18	0	20	1.36
7143384--7143453	36	1.9	37	85	8	99	55	2	2	38	1.29
7147580--7147758	28	6.4	28	79	5	191	53	6	17	22	1.66
7147592--7147759	55	3.0	54	79	10	194	52	5	17	23	1.66
7150651--7150694	21	2.1	21	100	0	88	34	4	4	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7163245--7163296	24	2.2	24	89	0	77	11	25	42	21	1.86
7165881--7165923	22	1.9	23	81	13	54	48	0	13	37	1.43
7167407--7167447	18	2.3	18	91	4	66	46	2	0	51	1.14
7169178--7169263	39	2.2	38	80	13	95	39	17	2	40	1.62
7169331--7169400	25	2.8	25	84	0	95	32	20	22	24	1.97
7178632--7178884	43	5.9	43	80	4	192	26	29	20	23	1.99
7178719--7178950	43	5.4	43	85	1	295	25	32	15	26	1.96
7179877--7179906	13	2.3	13	94	0	51	50	10	0	40	1.36
7180220--7180251	12	2.7	12	95	0	55	68	15	9	6	1.36
7181224--7182452	451	2.7	449	93	0	2044	34	18	15	31	1.92
7182721--7182801	21	3.8	21	69	11	58	38	37	1	23	1.63
7183381--7183573	41	4.8	39	78	12	171	30	25	21	22	1.99
7183381--7183532	42	3.9	37	79	14	123	29	26	21	21	1.99
7183423--7183490	36	1.9	36	90	3	111	27	25	23	23	2.00
7188755--7188875	42	2.9	42	87	0	170	17	22	16	43	1.87
7188789--7188852	21	3.0	21	72	0	65	18	25	14	42	1.88
7193564--7193601	20	1.9	20	84	10	51	34	0	13	52	1.40
7219450--7219555	23	4.9	21	78	10	115	38	22	20	17	1.93
7219446--7219554	44	2.5	43	83	7	132	39	22	20	18	1.92
7227405--7227442	6	6.3	6	100	0	76	34	15	18	31	1.92
7233994--7234027	16	2.1	16	100	0	68	26	38	23	11	1.89
7236988--7237038	16	3.2	16	91	0	84	33	25	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7251948--7251995	24	1.9	26	87	8	73	60	0	2	37	1.09
7257401--7257468	31	2.1	33	86	5	95	39	19	10	30	1.85
7263395--7263420	2	13.0	2	100	0	52	50	0	0	50	1.00
7263728--7263773	2	23.0	2	100	0	92	50	0	0	50	1.00
7267785--7267835	18	2.8	18	81	3	57	35	19	3	41	1.70
7270584--7270619	15	2.5	14	86	8	54	75	0	0	25	0.81
7273606--7273677	13	5.2	13	70	23	58	22	0	29	48	1.51
7273589--7273994	29	14.1	29	79	10	422	24	0	28	46	1.56
7273626--7273745	25	4.8	24	73	17	102	24	0	29	45	1.59
7273589--7273994	118	3.5	116	80	9	467	24	0	28	46	1.56
7274696--7274730	18	1.9	18	88	0	52	31	8	34	25	1.86
7276206--7276282	38	2.0	38	97	0	145	25	37	16	19	1.93
7276552--7276675	51	2.4	51	77	2	151	39	0	27	32	1.62
7276655--7276690	11	3.2	11	96	4	63	47	0	36	16	1.47
7277913--7277962	24	2.0	25	84	3	66	58	20	18	4	1.55
7277902--7277969	20	3.5	20	78	11	77	58	20	16	4	1.54
7280204--7280233	7	4.3	7	95	0	51	33	0	13	53	1.40
7281733--7281801	34	2.0	34	100	0	138	23	20	17	39	1.92
7284320--7284361	17	2.5	17	88	7	59	26	0	61	11	1.30
7284314--7284357	18	2.4	17	81	11	52	27	0	63	9	1.24
7284368--7284446	30	2.6	30	90	4	115	36	12	20	30	1.90
7285311--7285344	3	11.0	3	93	6	59	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7292215--7292240	2	13.0	2	100	0	52	0	50	0	50	1.00
7298984--7299046	27	2.3	27	81	10	74	38	9	14	38	1.78
7305445--7305574	64	2.0	65	92	1	217	23	18	30	26	1.98
7309798--7309872	27	2.8	27	85	0	105	20	16	18	45	1.86
7310368--7310421	23	2.4	22	75	12	56	27	5	25	40	1.78
7318000--7318042	18	2.4	19	80	7	54	58	0	0	41	0.98
7328981--7329021	17	2.3	19	80	16	52	12	17	0	70	1.16
7329980--7330176	97	2.0	97	90	1	306	23	10	21	44	1.82
7334201--7334272	17	4.4	17	75	20	66	40	0	2	56	1.13
7338908--7338937	7	4.1	7	95	4	51	83	13	3	0	0.77
7348934--7349180	41	6.1	40	79	6	250	37	27	18	17	1.93
7348934--7349180	82	3.0	80	83	6	302	37	27	18	17	1.93
7352892--7353110	51	4.3	51	94	0	375	31	15	24	27	1.95
7357439--7357475	12	3.1	12	92	0	56	10	21	40	27	1.86
7357997--7358051	24	2.2	24	80	3	65	27	23	32	16	1.96
7361323--7361369	24	2.0	24	87	8	69	31	10	0	57	1.33
7361323--7361360	12	3.2	12	82	10	51	34	10	0	55	1.34
7361562--7361594	8	4.1	8	88	11	50	33	3	0	63	1.10
7361688--7362050	181	2.0	181	100	0	726	30	7	8	52	1.61
7363573--7364013	220	2.0	220	100	0	882	31	16	17	34	1.92
7368196--7368363	44	3.8	44	84	5	232	30	14	25	30	1.95
7371593--7372628	44	23.5	44	92	0	1723	32	13	24	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371593--7372914	132	10.1	132	87	4	1837	32	13	24	29	1.93
7372558--7372696	71	2.0	71	92	0	233	33	10	26	28	1.90
7372514--7372740	115	2.0	115	91	0	364	33	11	25	29	1.91
7372470--7372784	159	2.0	159	91	0	504	32	11	25	30	1.91
7372426--7372830	203	2.0	203	92	0	666	32	12	25	30	1.92
7372629--7372853	44	5.1	44	96	0	414	29	11	24	33	1.91
7372629--7372916	44	6.6	44	91	3	404	31	11	24	32	1.91
7374296--7374342	24	2.0	24	87	8	69	31	10	0	57	1.33
7374296--7374333	12	3.2	12	82	10	51	34	10	0	55	1.34
7375773--7375805	18	1.9	18	88	11	52	30	0	15	54	1.41
7398620--7398664	21	2.3	18	76	20	54	53	17	6	22	1.67
7398625--7398666	21	2.0	21	95	0	75	54	21	4	19	1.62
7399210--7399306	48	2.0	49	84	6	126	44	7	16	31	1.75
7401467--7401526	30	2.0	30	100	0	120	46	20	6	26	1.75
7402682--7402718	14	2.6	14	86	0	56	51	24	0	24	1.49
7408811--7408931	40	3.0	40	100	0	242	24	12	19	42	1.86
7410349--7410381	11	2.8	12	86	4	50	33	3	12	51	1.54
7412880--7413053	25	6.9	25	67	16	99	36	18	22	21	1.95
7419874--7420077	41	5.0	41	89	0	309	28	18	26	25	1.98
7419874--7420077	82	2.5	82	92	0	345	28	18	26	25	1.98
7426508--7426576	24	2.8	25	82	10	90	34	23	21	20	1.96
7426558--7426652	25	3.8	24	76	10	75	36	23	22	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7426543--7426652	50	2.2	50	81	1	123	35	23	22	18	1.96
7426570--7426680	25	4.4	25	76	13	91	36	21	22	19	1.96
7429881--7429940	30	2.0	30	100	0	120	36	10	10	43	1.72
7433332--7433564	118	2.0	118	96	0	430	28	16	18	36	1.92
7434252--7434364	31	3.7	29	78	8	118	39	1	5	53	1.34
7434303--7434481	89	2.0	90	98	1	351	39	5	6	48	1.53
7441187--7441228	20	2.1	20	95	0	75	28	4	19	47	1.69
7442437--7442482	17	2.8	16	78	12	56	56	4	2	36	1.31
7442444--7442495	18	2.9	17	77	11	50	55	3	1	38	1.29
7443198--7443235	16	2.4	16	90	0	58	31	0	34	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145