genome.fa.s2.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  130  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43641145--43641446	150	2.0	150	93	0	514	29	19	18	32	1.96
43644506--43644581	30	2.5	30	82	0	89	25	26	10	38	1.88
43644566--43644755	30	6.4	30	75	8	138	22	26	12	38	1.90
43644539--43644717	90	2.0	90	82	6	220	23	26	13	36	1.92
43644684--43644755	29	2.4	30	83	2	92	16	31	12	38	1.86
43644745--43644813	29	2.4	29	77	0	75	27	31	8	31	1.87
43651082--43651245	79	2.1	80	96	1	303	39	19	6	34	1.78
43651931--43652028	30	3.3	30	83	0	115	25	22	12	39	1.89
43651930--43652062	60	2.2	60	83	0	167	25	25	12	36	1.92
43651961--43652070	30	3.7	30	80	0	121	23	27	14	34	1.94
43652049--43652117	30	2.3	29	90	4	104	17	27	11	43	1.83
43652110--43652179	29	2.4	29	88	4	106	21	27	12	38	1.90
43662728--43662782	25	2.2	25	81	12	60	49	5	1	43	1.36
43668652--43668685	15	2.3	15	94	0	59	14	14	0	70	1.17
43677992--43678175	29	6.3	29	83	0	188	26	13	21	38	1.91
43680012--43680195	29	6.3	29	83	0	188	26	13	21	38	1.91
43681489--43681544	27	2.2	26	84	9	71	17	25	5	51	1.66
43682480--43682604	50	2.5	50	85	0	160	27	12	24	35	1.92
43685201--43685234	16	2.1	17	88	5	52	35	0	0	64	0.94
43688746--43688799	27	2.0	27	88	0	81	31	37	16	14	1.89
43691101--43691134	17	2.0	17	88	0	50	70	0	0	29	0.87
43696819--43696852	17	2.0	17	94	0	59	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43698182--43698389	44	5.0	44	82	12	258	25	18	25	30	1.98
43698270--43698335	33	2.0	34	96	3	125	24	22	25	27	2.00
43698228--43698379	77	2.0	78	90	1	243	24	19	25	30	1.98
43698706--43699208	101	5.0	101	94	0	816	30	22	22	24	1.99
43698756--43699116	50	7.2	50	61	5	145	31	21	22	24	1.98
43699803--43699860	19	3.0	19	87	2	89	39	8	13	37	1.76
43699803--43699879	38	1.9	41	87	10	115	37	7	14	40	1.75
43700082--43700126	23	2.0	23	81	0	54	22	0	15	62	1.33
43712503--43712538	11	3.2	11	92	4	54	33	11	38	16	1.84
43717435--43717465	9	3.4	9	90	0	53	45	12	9	32	1.75
43717553--43717677	19	6.7	19	70	20	77	56	7	1	35	1.37
43717535--43717682	73	2.0	74	98	1	289	54	8	1	35	1.38
43718996--43719375	192	2.0	192	97	0	724	30	13	15	39	1.87
43721549--43721743	41	4.8	41	87	1	239	19	23	26	31	1.98
43721549--43721745	82	2.4	83	85	1	263	19	22	25	31	1.98
43721549--43721780	82	2.8	82	80	5	254	20	22	23	32	1.98
43726196--43726333	40	3.5	40	81	0	150	39	21	21	18	1.93
43726205--43726333	20	6.4	20	74	0	105	38	20	20	20	1.93
43727136--43727182	22	2.1	22	84	0	58	51	17	12	19	1.77
43727188--43727376	32	5.9	32	75	7	168	35	20	21	22	1.96
43727200--43727376	64	2.8	64	84	3	223	36	22	20	20	1.96
43727551--43727632	24	3.5	23	83	5	92	47	26	7	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43727682--43727864	54	3.4	54	77	8	176	22	20	20	36	1.95
43727682--43727865	27	6.8	27	79	6	133	22	20	20	36	1.95
43730225--43730253	14	2.0	15	93	6	51	68	6	0	24	1.13
43730683--43730731	20	2.5	20	89	0	71	55	10	6	28	1.57
43730683--43730734	25	2.1	25	85	0	68	55	11	5	26	1.58
43735253--43735603	162	2.1	163	79	7	372	46	9	14	29	1.77
43735269--43735641	82	4.5	82	78	7	319	45	9	15	29	1.78
43735772--43735822	13	3.9	13	80	12	52	64	1	0	33	1.05
43737877--43738206	82	4.0	82	86	3	387	46	10	14	28	1.78
43737888--43738196	164	1.9	163	85	2	431	47	10	15	26	1.78
43738334--43738387	13	4.2	13	77	15	51	66	1	0	31	1.02
43739260--43739300	20	2.0	20	95	0	73	51	9	7	31	1.62
43756536--43756609	25	2.9	26	88	6	116	27	21	16	35	1.94
43764503--43764527	11	2.3	11	100	0	50	56	0	8	36	1.29
43766927--43766994	35	1.9	35	90	0	109	30	19	19	30	1.96
43775176--43775405	115	2.0	115	93	0	388	30	20	10	39	1.86
43781283--43781355	25	2.9	25	82	8	94	26	17	27	28	1.98
43789464--43789492	14	2.0	15	93	6	51	27	0	34	37	1.57
43790275--43790301	14	1.9	14	100	0	54	33	37	0	29	1.58
43792201--43792252	9	5.7	9	79	4	50	19	40	5	34	1.75
43792200--43792245	19	2.5	20	86	10	62	21	39	4	34	1.73
43792270--43792300	16	2.0	16	93	6	55	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43802973--43803157	101	1.8	102	87	5	277	25	17	26	30	1.98
43802964--43803165	51	4.0	51	75	12	186	25	16	27	29	1.97
43803383--43803414	16	2.0	16	93	0	55	59	0	15	25	1.36
43808686--43808745	30	2.0	30	87	6	86	46	11	8	33	1.70
43832808--43832863	27	2.1	27	96	0	103	25	10	19	44	1.83
43841422--43841452	14	2.2	14	100	0	62	12	51	0	35	1.40
43841422--43841456	18	1.9	18	94	0	61	11	51	0	37	1.38
43844187--43844279	29	3.2	29	76	11	93	15	23	23	37	1.93
43844212--43844290	29	2.7	29	75	9	81	15	22	20	41	1.89
43848128--43848179	15	3.4	15	75	2	59	78	0	5	15	0.92
43849284--43849312	14	2.1	14	93	6	51	13	0	41	44	1.44
43849355--43849752	96	4.2	94	85	2	483	40	3	17	38	1.66
43849496--43849657	43	3.5	43	66	17	119	40	3	20	36	1.68
43849398--43849752	191	1.9	191	84	3	489	40	3	18	37	1.67
43853100--43853196	34	2.7	36	85	7	128	46	7	2	44	1.42
43853707--43853775	30	2.3	30	84	0	84	7	13	44	34	1.71
43854245--43854277	7	4.7	7	100	0	66	57	15	0	27	1.38
43855391--43855471	11	7.4	11	89	9	121	39	0	35	24	1.56
43866228--43866314	6	14.5	6	80	9	52	16	3	8	72	1.22
43866263--43866314	12	4.4	12	95	2	88	19	0	11	69	1.18
43866263--43866314	18	2.9	18	94	2	88	19	0	11	69	1.18
43867989--43868037	20	2.5	20	79	0	53	16	10	4	69	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43868632--43868672	18	2.3	18	86	0	55	21	17	26	34	1.95
43869365--43869461	43	2.2	43	83	5	115	34	24	17	23	1.96
43874871--43874926	27	2.0	28	96	3	105	39	7	0	53	1.28
43881851--43882046	30	7.0	29	70	19	105	0	32	0	67	0.91
43881912--43882053	4	35.0	4	74	17	98	0	32	0	67	0.91
43881888--43882052	38	4.1	43	76	17	165	0	31	0	68	0.90
43881963--43882064	30	3.3	30	79	12	109	0	35	0	64	0.94
43881854--43882052	82	2.5	79	85	10	250	0	31	0	68	0.90
43881905--43882017	44	2.4	47	78	15	128	0	30	0	69	0.89
43881993--43882064	18	4.1	17	78	10	74	0	36	0	63	0.94
43882097--43882155	26	2.2	26	90	3	91	13	23	32	30	1.93
43882219--43882285	26	2.6	25	88	9	91	53	1	4	40	1.30
43887135--43887180	3	15.3	3	100	0	92	34	0	32	32	1.58
43888469--43888624	52	3.0	51	91	1	249	24	9	27	38	1.86
43888469--43888624	51	3.0	51	92	1	249	24	9	27	38	1.86
43888627--43888975	125	2.8	123	90	3	531	30	16	22	30	1.96
43890276--43890419	27	6.0	23	85	10	134	31	0	21	46	1.52
43890357--43890390	17	2.0	17	88	0	50	35	0	14	50	1.44
43890130--43890752	249	2.4	256	88	8	881	31	0	22	45	1.56
43890688--43890789	28	3.9	24	87	7	96	30	0	22	47	1.52
43890838--43890913	35	2.1	36	87	2	109	28	0	21	50	1.49
43890412--43890901	175	2.8	174	94	1	757	31	1	23	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43890374--43891001	59	10.6	61	67	19	203	31	0	23	44	1.59
43893371--43893421	9	5.6	9	75	13	50	64	0	0	35	0.94
43893371--43893420	18	2.7	19	79	11	59	66	0	0	34	0.92
43893378--43893435	29	2.0	29	90	9	93	60	1	0	37	1.07
43893466--43893571	52	2.1	51	85	1	140	33	1	31	33	1.69
43893524--43893592	22	3.1	22	87	0	102	39	1	27	31	1.66
43896138--43896317	21	8.6	21	67	2	94	20	21	16	42	1.89
43896171--43896333	42	3.9	42	83	4	186	17	21	18	42	1.89
43896176--43896333	84	1.9	84	84	2	210	17	22	17	43	1.88
43905294--43905365	19	3.8	19	90	1	119	36	8	16	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145