genome.fa.s2.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  76  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25167016--25167076	7	8.6	7	81	3	68	19	0	31	49	1.49
25167021--25167072	15	3.6	15	84	7	72	17	0	36	46	1.48
25167124--25167162	20	1.9	21	89	5	62	23	5	23	48	1.70
25178250--25178289	20	2.0	20	85	0	53	42	15	12	30	1.83
25179729--25179759	9	3.4	9	90	0	53	25	12	22	38	1.90
25181137--25181189	25	2.2	24	83	12	65	64	3	0	32	1.12
25183260--25183391	69	1.9	67	86	6	185	44	13	10	31	1.78
25212672--25212709	17	2.3	17	86	4	51	26	52	0	21	1.47
25213861--25214065	102	2.0	103	97	2	387	40	13	8	37	1.75
25215618--25215655	16	2.3	17	86	4	51	21	0	52	26	1.47
25216700--25216731	15	2.2	15	94	5	57	65	0	3	31	1.08
25218333--25218777	222	2.0	222	100	0	890	24	17	17	39	1.92
25219019--25219067	25	2.0	25	91	0	80	30	8	4	57	1.47
25224826--25225573	132	5.7	132	98	0	1410	28	18	24	28	1.98
25226249--25226297	24	2.0	24	96	0	89	18	36	32	12	1.88
25229185--25229327	72	2.0	72	94	1	252	37	9	16	37	1.81
25232423--25232478	28	2.0	28	96	0	103	33	17	16	32	1.92
25236748--25236819	35	2.1	35	100	0	144	33	27	2	36	1.72
25246654--25246769	58	2.0	58	89	0	178	18	15	20	44	1.86
25251762--25251916	41	3.8	41	94	1	258	24	27	19	29	1.98
25252242--25252456	77	2.8	77	81	4	231	40	18	4	37	1.70
25252242--25252496	76	3.4	74	77	9	230	40	18	4	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25255051--25255151	51	2.0	51	92	0	166	25	15	21	36	1.93
25256419--25256504	43	2.0	44	95	2	156	33	4	6	54	1.48
25256432--25256524	43	2.2	43	90	0	141	32	6	8	52	1.57
25262296--25262501	87	2.4	87	87	1	288	33	8	18	38	1.82
25264980--25265035	21	2.7	21	80	5	60	21	32	30	16	1.95
25265122--25265154	12	2.6	13	90	4	50	12	36	33	18	1.88
25268462--25268502	20	2.0	20	85	0	55	43	7	2	46	1.44
25272961--25273032	36	2.0	36	100	0	144	41	11	11	36	1.76
25279854--25279882	14	2.0	15	93	6	51	41	0	27	31	1.56
25286376--25286572	25	8.0	24	69	10	121	20	25	20	33	1.97
25289262--25289382	54	2.2	54	98	0	233	34	11	9	44	1.72
25289486--25289525	20	2.1	19	85	4	53	40	10	5	45	1.60
25289546--25289611	2	33.0	2	100	0	132	50	0	50	0	1.00
25296451--25296513	20	3.2	20	75	8	74	31	20	30	17	1.96
25296436--25296513	40	2.0	40	92	0	129	33	17	30	17	1.94
25303774--25303886	20	5.7	20	71	8	77	36	19	30	14	1.91
25303762--25303915	40	3.8	40	79	3	175	36	18	29	15	1.92
25306552--25306582	15	2.1	15	93	0	53	48	0	3	48	1.17
25312739--25312841	40	2.6	39	79	1	116	16	19	23	40	1.91
25313547--25313756	103	2.0	103	98	0	402	37	4	19	39	1.73
25316694--25316758	25	2.7	24	86	9	96	40	13	18	27	1.89
25320500--25320569	35	2.0	35	100	0	140	25	25	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25321411--25321467	28	2.0	28	86	0	78	29	14	31	24	1.94
25324156--25324225	35	2.0	35	97	0	131	22	8	27	41	1.83
25330421--25330446	7	3.7	7	100	0	52	30	0	26	42	1.56
25336556--25336630	34	2.2	34	85	0	96	37	12	10	40	1.77
25336806--25336861	22	2.5	22	97	0	103	32	23	23	21	1.98
25336823--25336873	22	2.3	22	86	0	66	35	21	23	19	1.96
25344079--25344156	34	2.3	34	81	0	93	33	12	11	42	1.79
25344331--25344437	23	4.7	23	77	7	87	37	18	23	20	1.94
25346054--25346141	27	3.3	27	90	0	131	28	26	14	30	1.95
25348005--25348037	17	1.9	17	88	11	50	69	3	3	24	1.16
25349241--25349270	12	2.4	13	94	5	53	26	26	6	40	1.81
25356058--25356148	27	3.4	28	84	4	116	30	23	23	23	1.99
25356463--25356523	27	2.3	27	79	0	68	22	9	24	42	1.84
25356477--25356562	27	3.2	27	86	1	120	16	13	22	47	1.81
25356795--25356832	19	2.0	19	89	0	58	15	36	26	21	1.93
25360396--25360503	52	2.1	52	100	0	216	31	33	11	24	1.90
25363788--25363860	27	2.7	28	82	4	87	28	24	24	21	1.99
25363821--25363873	27	2.0	27	88	0	79	33	24	18	22	1.97
25363975--25364025	26	2.0	26	84	0	66	37	19	21	21	1.95
25364214--25364272	27	2.2	27	87	0	82	20	16	23	38	1.92
25364223--25364311	27	3.3	27	87	1	126	17	14	21	46	1.84
25383139--25383190	19	2.9	17	78	10	59	36	11	17	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25383179--25383224	22	2.0	23	84	12	60	34	0	19	45	1.51
25384007--25384075	27	2.5	27	88	2	93	26	20	14	39	1.91
25386500--25386633	61	2.2	61	86	0	187	32	14	26	26	1.95
25386526--25386630	32	3.4	31	67	17	83	29	16	26	27	1.97
25386523--25386661	61	2.3	61	82	2	154	31	16	27	24	1.96
25406814--25406893	28	2.9	28	81	7	99	20	13	5	61	1.51
25408651--25408682	3	10.7	3	93	0	55	34	3	0	62	1.11
25413131--25413181	23	2.2	23	89	6	77	29	9	19	41	1.84
25420241--25420287	23	2.0	23	83	0	58	34	12	17	36	1.87
25421858--25421897	14	2.9	14	84	0	53	32	7	17	42	1.77
25421866--25421932	34	1.9	35	84	3	91	31	8	13	46	1.74
25423806--25423980	54	3.4	54	66	18	138	29	17	24	29	1.97
25423746--25424017	98	2.8	97	86	1	355	27	20	23	27	1.99
25423846--25424584	143	5.2	143	82	2	815	30	19	22	28	1.98
25427340--25427672	86	3.9	86	83	2	384	32	20	17	29	1.96
25429029--25429118	26	3.6	24	78	14	85	35	16	23	24	1.95
25431011--25431060	25	2.0	26	96	4	93	52	10	8	30	1.64
25432403--25432461	29	2.0	30	86	3	84	27	6	13	52	1.65
25438903--25438936	16	2.1	17	88	5	52	32	17	8	41	1.80
25447487--25447654	66	2.5	66	86	3	214	40	17	27	13	1.88
25447636--25447737	42	2.4	42	86	0	132	34	16	43	5	1.72
25447636--25447737	21	4.9	21	82	0	114	34	16	43	5	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25447901--25447930	9	3.2	9	90	9	51	30	0	3	66	1.07
25448092--25448615	43	12.2	43	81	7	268	32	27	20	20	1.97
25448151--25448639	43	11.4	43	85	4	657	34	28	18	18	1.95
25448151--25448639	86	5.7	86	97	1	876	34	28	18	18	1.95
25448265--25448705	43	10.3	43	82	7	175	32	28	18	20	1.96
25448804--25448848	22	2.1	21	91	4	72	42	28	17	11	1.84
25449802--25449861	28	2.2	28	85	8	79	56	13	5	25	1.57
25454438--25454539	30	3.4	30	84	2	134	23	31	17	27	1.97
25454506--25454593	42	2.1	42	91	0	140	19	30	25	25	1.98
25457249--25457319	37	1.9	37	85	0	97	28	16	38	16	1.91
25459165--25459255	21	4.1	22	70	16	64	51	3	2	42	1.30
25459935--25459963	2	14.5	2	100	0	58	48	0	0	51	1.00
25465274--25465306	12	2.8	12	90	9	50	84	3	12	0	0.72
25478743--25479064	44	7.3	44	65	9	163	29	21	24	23	1.99
25478737--25479135	132	3.0	132	93	0	663	29	20	25	23	1.99
25479799--25479831	12	2.8	12	90	9	50	84	3	12	0	0.72
25481059--25481287	43	5.3	43	98	0	431	32	15	4	47	1.65
25490829--25490886	29	2.0	29	96	0	107	13	12	0	74	1.08
25490837--25490902	29	2.3	29	84	5	80	16	7	1	74	1.12
25492219--25492252	9	3.8	9	96	0	59	44	14	11	29	1.81
25497479--25497521	14	3.0	14	79	3	50	76	0	6	16	0.99
25497773--25497836	30	2.1	30	91	0	101	18	4	32	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25497769--25497824	15	3.7	15	69	9	51	16	5	37	41	1.71
25498265--25498646	44	8.2	44	65	21	147	28	19	19	32	1.96
25498226--25498746	142	3.7	142	94	0	907	28	19	18	33	1.96
25498566--25498662	44	2.2	44	84	0	131	25	21	19	32	1.97
25512607--25512670	30	2.1	30	85	5	85	20	9	31	39	1.84
25515205--25515241	18	2.1	18	89	0	56	51	13	8	27	1.69
25520731--25520760	1	30.0	1	100	0	60	100	0	0	0	0.00
25528081--25528250	85	2.0	85	95	0	304	44	10	12	32	1.76
25533835--25533874	16	2.5	16	83	0	53	52	12	20	15	1.74
25535126--25535179	25	2.2	25	82	0	63	33	7	14	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145