genome.fa.s2.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  98  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32599127--32599151	13	1.9	13	100	0	50	72	0	4	24	1.02
32612871--32612926	28	2.0	28	92	0	94	26	33	26	12	1.92
32613793--32613894	30	3.4	30	76	0	87	21	24	12	41	1.88
32617786--32617820	11	3.2	11	91	0	52	5	20	0	74	1.02
32619920--32619994	31	2.6	29	79	14	82	24	6	1	68	1.22
32619922--32620002	19	4.1	20	70	19	62	25	6	2	65	1.29
32622528--32622637	30	3.8	28	69	19	82	23	19	10	47	1.79
32622748--32622777	7	4.3	7	100	0	60	30	13	30	26	1.94
32623060--32623211	59	2.6	59	80	7	166	52	9	13	23	1.70
32625151--32625193	16	2.6	17	82	7	54	53	4	0	41	1.21
32625711--32625748	3	12.7	3	100	0	76	65	0	0	34	0.93
32628907--32629081	23	7.6	23	80	0	143	45	21	13	18	1.84
32628909--32629080	69	2.5	69	79	0	182	45	22	13	18	1.84
32631439--32631495	23	2.4	24	74	11	64	73	0	22	3	0.98
32634766--32634917	82	1.8	83	90	1	243	40	13	8	37	1.76
32636049--32636630	194	3.0	194	100	0	1164	45	11	9	34	1.72
32641047--32641730	50	13.7	50	71	4	392	25	22	22	29	1.99
32641047--32641326	151	1.9	150	91	0	461	24	23	23	27	2.00
32641146--32641743	100	6.0	101	81	5	682	25	22	22	30	1.99
32641157--32641742	199	2.9	198	92	1	985	24	22	22	30	1.99
32652988--32653021	16	2.1	16	94	0	59	41	2	5	50	1.42
32653092--32653139	25	1.9	25	100	0	96	47	8	4	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32653634--32653730	48	2.0	49	93	2	169	41	19	8	30	1.81
32653839--32653888	24	2.1	24	100	0	100	42	24	0	34	1.55
32655779--32655829	27	1.9	26	88	11	77	21	9	11	56	1.63
32657683--32657732	25	2.0	25	96	0	91	28	38	12	22	1.89
32662337--32662380	19	2.2	20	88	4	63	25	2	4	68	1.20
32662489--32662529	21	2.0	22	90	9	68	24	2	0	73	0.96
32662492--32662537	20	2.2	21	81	14	51	26	2	2	69	1.11
32672612--32672793	90	2.0	91	96	1	339	47	2	6	44	1.40
32676080--32676112	14	2.4	14	100	0	66	48	6	30	15	1.69
32680706--32680802	25	3.9	25	77	10	117	35	21	25	17	1.95
32680711--32680825	50	2.3	50	83	5	151	36	20	24	19	1.95
32680800--32680990	94	2.0	94	97	0	364	30	21	20	27	1.98
32692855--32693112	128	2.0	129	99	0	509	43	5	3	46	1.44
32695880--32695968	31	3.2	31	73	26	115	34	21	2	41	1.66
32695894--32695945	22	2.4	22	96	0	95	32	23	1	42	1.65
32697250--32697325	35	2.1	36	90	2	118	44	27	13	14	1.82
32706225--32706258	15	2.3	15	89	0	50	8	44	2	44	1.50
32713372--32713505	57	2.3	56	83	7	153	51	4	0	43	1.27
32726234--32726258	11	2.3	11	100	0	50	56	0	0	44	0.99
32726832--32726903	20	3.7	19	83	7	83	34	2	6	55	1.41
32728402--32728526	60	2.1	60	81	0	142	33	5	17	43	1.73
32729062--32729247	91	2.0	92	97	1	356	45	11	1	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32729601--32729633	16	2.1	16	88	5	50	69	0	0	30	0.88
32729296--32729826	192	2.7	192	77	5	557	42	9	16	31	1.80
32739948--32739997	20	2.5	20	90	0	73	18	24	34	24	1.96
32740074--32740122	25	2.0	25	83	0	62	18	36	20	24	1.94
32741224--32741285	26	2.4	26	80	0	70	25	24	24	25	2.00
32743919--32744114	69	2.8	71	83	5	247	28	17	22	31	1.97
32758335--32758615	31	9.1	31	92	0	438	45	18	8	27	1.79
32758781--32759197	205	2.0	206	99	0	818	34	24	6	33	1.82
32762367--32762458	27	3.4	27	84	0	121	17	16	21	44	1.86
32771547--32771589	24	2.0	22	82	17	54	51	6	2	39	1.42
32772940--32773104	31	5.3	31	87	0	231	44	15	9	30	1.78
32776929--32776999	34	2.1	34	94	0	124	33	14	5	46	1.67
32778605--32778761	77	2.0	77	91	0	251	30	15	7	45	1.74
32779001--32779046	23	2.0	23	100	0	92	30	17	8	43	1.79
32782609--32782652	22	2.0	23	82	13	56	2	20	4	72	1.13
32787655--32787726	27	2.6	27	76	12	74	50	16	2	30	1.60
32787655--32787747	29	3.3	29	75	19	88	48	19	2	30	1.61
32788295--32788336	20	2.3	19	88	12	61	28	0	4	66	1.12
32790785--32790849	18	3.6	19	78	17	59	27	1	0	70	0.96
32790772--32790847	33	2.3	32	82	10	91	26	2	1	69	1.09
32790787--32790847	15	3.9	14	73	26	52	29	1	0	68	0.99
32807721--32808128	135	3.0	135	98	0	782	36	11	10	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32812880--32812945	28	2.4	29	77	7	75	18	27	18	36	1.94
32812881--32812954	29	2.7	27	73	10	69	20	25	17	36	1.94
32829216--32829251	10	3.5	10	88	7	54	0	41	0	58	0.98
32834080--32834251	42	4.1	42	100	0	344	36	9	11	43	1.73
32838914--32838960	19	2.3	21	86	13	64	38	4	4	53	1.40
32839697--32839743	19	2.3	21	86	13	64	38	4	4	53	1.40
32849022--32849060	20	2.0	20	95	5	71	28	10	30	30	1.90
32851970--32852526	132	4.2	132	93	2	881	30	20	24	24	1.99
32854576--32854622	19	2.3	21	86	13	64	38	4	4	53	1.40
32854563--32854756	104	1.9	104	97	0	370	43	4	4	48	1.41
32877074--32877107	17	1.9	18	94	5	61	11	44	32	11	1.77
32897729--32897799	33	2.2	33	92	5	117	28	4	29	38	1.76
32903309--32903363	19	2.8	19	75	2	56	60	1	0	38	1.08
32918450--32918597	43	3.5	43	83	8	185	27	27	16	28	1.97
32921703--32921747	19	2.3	20	82	17	60	37	2	0	60	1.09
32930098--32930136	15	2.6	15	100	0	78	17	46	0	35	1.49
32934604--32934631	14	2.0	14	100	0	56	57	0	7	35	1.26
32935709--32936273	283	2.0	283	98	0	1103	41	16	13	27	1.87
32940865--32941330	27	17.3	27	83	5	523	44	19	18	18	1.87
32941480--32941579	26	3.8	26	82	2	103	17	24	23	36	1.95
32941679--32941743	28	2.4	28	92	2	105	24	24	24	26	2.00
32941676--32941751	28	2.4	32	75	20	88	25	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32941676--32941763	28	2.8	32	72	22	87	23	22	26	27	2.00
32944004--32944117	43	2.7	43	86	4	151	30	27	16	25	1.97
32946203--32946274	21	3.5	19	80	14	81	58	0	0	41	0.98
32946216--32946285	7	10.3	7	93	6	110	58	0	0	41	0.98
32957823--32957856	17	2.0	17	94	0	59	38	2	11	47	1.55
32963033--32963072	20	2.0	21	95	5	73	37	0	0	62	0.95
32963034--32963080	20	2.3	20	88	0	67	34	0	4	61	1.15
32965676--32965731	28	2.0	28	100	0	112	14	32	17	35	1.90
32965857--32965936	38	2.1	38	93	4	135	26	35	7	31	1.84
32967613--32967664	24	2.2	24	96	0	95	61	7	5	25	1.45
32969534--32969579	23	2.0	23	87	4	67	63	2	0	34	1.07
32973315--32973369	21	2.6	21	79	0	65	30	32	9	27	1.88
32981616--32981661	24	1.9	24	86	0	65	45	17	26	10	1.81
32990041--32990429	45	8.7	45	81	14	486	28	20	26	23	1.99
32990047--32990429	89	4.3	89	100	0	766	28	20	27	23	1.99
32990403--32990606	44	4.7	44	69	9	141	29	18	21	30	1.97
32990403--32990674	128	2.1	127	95	0	490	28	18	20	31	1.97
32993878--32993998	60	2.0	60	93	3	208	39	10	23	26	1.87
32994040--32994114	12	6.4	11	95	3	69	62	2	1	33	1.17
32994058--32994118	3	20.3	3	100	0	122	67	0	0	32	0.91
33001122--33001166	23	2.0	23	95	0	81	42	20	8	28	1.82
33001123--33001172	23	2.2	23	88	0	73	46	18	10	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33004140--33004419	50	5.5	50	83	5	285	27	21	28	22	1.99
33005957--33006000	23	1.9	23	95	0	79	47	25	0	27	1.52
33016882--33016955	24	3.0	24	82	5	87	35	22	24	17	1.95
33018693--33018728	6	6.0	6	93	0	63	33	0	13	52	1.41
33025145--33025195	20	2.5	20	84	12	61	27	7	3	60	1.42
33026324--33026367	3	15.0	3	95	4	81	34	0	0	65	0.93
33028258--33028301	21	2.0	21	86	4	61	47	4	4	43	1.44
33031678--33031711	5	6.8	5	90	9	52	0	0	14	85	0.60
33031675--33031712	16	2.5	15	91	8	67	0	0	13	86	0.56
33031678--33031712	11	3.4	11	92	7	56	0	0	14	85	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145