genome.fa.s2.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  125  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41716095--41716165	21	3.4	21	94	0	115	5	47	15	30	1.68
41718069--41718168	50	2.0	49	94	1	173	33	0	19	48	1.49
41718070--41718176	9	12.8	8	79	9	65	32	0	18	48	1.49
41720652--41720723	7	9.2	8	76	14	62	37	45	0	16	1.48
41720651--41720739	7	11.9	7	72	13	52	35	46	1	16	1.55
41720651--41720723	16	4.7	16	80	10	89	36	45	0	17	1.49
41720954--41721015	32	2.0	32	90	3	99	38	0	8	53	1.31
41721761--41721872	7	15.4	7	65	20	52	41	38	1	18	1.61
41721779--41721851	21	3.7	20	68	18	64	38	39	2	19	1.66
41721769--41721851	38	2.3	35	84	14	105	39	38	2	19	1.65
41722087--41722757	114	5.9	114	85	1	835	26	23	22	27	1.99
41730888--41730996	41	2.6	43	83	4	141	25	18	25	30	1.98
41738247--41738387	27	5.2	27	86	6	180	42	17	19	20	1.89
41738589--41738685	26	3.8	26	80	1	124	19	23	25	30	1.98
41738586--41738685	52	1.9	51	89	2	155	19	23	26	32	1.97
41738791--41738914	30	4.2	29	74	15	96	25	25	20	29	1.99
41741046--41741079	12	2.8	12	86	0	50	20	5	17	55	1.62
41742317--41742402	43	2.0	42	86	2	118	32	23	19	24	1.98
41747340--41747399	18	3.3	18	70	11	50	60	0	25	15	1.35
41753261--41753358	39	2.5	39	88	1	135	36	9	11	42	1.73
41755891--41755942	20	2.8	18	80	11	68	9	23	3	63	1.41
41755888--41755949	19	3.3	18	80	8	79	8	22	3	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41763625--41763691	33	2.0	34	85	8	93	13	23	4	58	1.54
41773324--41773372	24	2.0	24	100	0	98	16	28	16	38	1.90
41780545--41780610	33	2.0	32	82	8	80	13	27	6	53	1.63
41780612--41780678	6	11.7	6	85	9	95	14	16	0	68	1.21
41790976--41791067	39	2.4	38	88	1	139	41	11	9	36	1.75
41793910--41793939	15	2.0	15	100	0	60	20	20	0	60	1.37
41795180--41795383	92	2.2	92	81	5	243	30	17	18	33	1.94
41796869--41796910	16	2.6	16	92	0	66	28	30	11	28	1.92
41798469--41798538	20	3.3	20	65	27	54	32	7	11	48	1.66
41798447--41798538	44	2.1	44	95	0	166	28	8	13	50	1.70
41799773--41799799	13	2.1	13	100	0	54	59	7	0	33	1.25
41807682--41807759	12	6.9	12	70	16	51	69	0	19	11	1.18
41807688--41807730	21	2.0	22	90	4	70	67	0	20	11	1.22
41807748--41807849	33	3.1	33	73	23	90	55	5	25	12	1.59
41816019--41816064	13	3.5	13	88	5	58	23	6	6	63	1.43
41817106--41817147	16	2.6	16	88	7	59	26	30	11	30	1.92
41822087--41822142	21	2.7	21	75	8	60	8	21	0	69	1.15
41822083--41822155	12	6.5	12	72	16	50	9	20	1	68	1.25
41822114--41822156	12	3.8	11	82	14	52	11	20	2	65	1.36
41824551--41824593	22	2.0	21	86	4	59	55	9	0	34	1.32
41825190--41825359	91	1.9	92	80	3	200	35	20	12	31	1.90
41829168--41829268	50	2.1	49	90	5	161	55	10	2	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41837280--41837452	43	4.0	43	100	0	346	32	23	23	20	1.98
41839719--41839758	20	2.0	21	90	5	64	22	22	5	50	1.68
41841107--41841149	14	3.0	14	86	3	59	55	6	16	20	1.64
41841583--41841651	33	2.1	33	100	0	138	40	8	14	36	1.77
41852659--41852735	38	2.0	39	89	2	120	45	10	11	32	1.75
41853187--41853216	11	2.7	11	89	0	51	70	0	0	30	0.88
41866196--41866232	10	3.9	9	89	10	56	56	21	0	21	1.42
41866196--41866232	19	1.9	19	94	0	65	56	21	0	21	1.42
41866323--41866450	54	2.4	53	83	8	161	44	13	11	30	1.79
41868142--41868184	18	2.4	18	88	7	61	13	16	2	67	1.33
41868542--41868580	17	2.3	17	91	8	62	15	17	23	43	1.87
41870341--41870378	19	2.0	19	94	0	67	50	10	10	28	1.70
41870331--41870456	54	2.3	54	90	0	198	42	15	10	32	1.80
41876788--41876834	21	2.2	22	84	3	60	51	12	8	27	1.69
41881738--41881777	20	2.0	21	90	5	64	22	27	17	32	1.96
41883257--41883314	21	2.9	19	80	16	64	68	6	6	17	1.34
41886669--41886707	20	1.9	21	89	5	62	23	28	15	33	1.95
41890140--41890175	15	2.4	15	95	0	63	25	22	25	27	2.00
41890964--41890992	8	3.6	8	100	0	58	24	0	0	75	0.80
41894840--41895291	50	8.8	50	76	6	327	28	21	27	21	1.99
41894901--41895184	155	1.9	149	81	4	343	27	22	28	21	1.99
41894844--41895284	205	2.2	205	92	0	731	29	21	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41898975--41899138	81	2.0	82	98	1	321	25	18	24	31	1.97
41918930--41918971	18	2.3	18	80	8	50	42	2	9	45	1.49
41923720--41923761	18	2.3	18	80	8	50	40	4	9	45	1.58
41932434--41932472	18	2.2	17	82	13	51	5	17	2	74	1.12
41936033--41936074	22	2.0	21	85	4	57	42	9	28	19	1.82
41945772--41945818	24	1.9	25	82	4	60	42	4	25	27	1.73
41950411--41950551	70	2.0	70	90	0	219	30	12	12	44	1.79
41950505--41950590	40	2.2	40	95	0	154	29	9	13	47	1.74
41950673--41950708	10	3.6	10	85	14	56	22	0	22	55	1.44
41950676--41950708	11	3.2	11	87	12	52	24	0	18	57	1.40
41950807--41950871	21	2.9	23	80	8	80	38	13	15	32	1.87
41955016--41955156	70	2.0	70	91	0	228	31	11	10	46	1.74
41955110--41955195	40	2.2	40	97	0	163	29	8	13	48	1.71
41955278--41955322	9	4.7	9	86	13	63	20	0	22	57	1.40
41955291--41955322	11	3.1	11	91	8	50	18	0	18	62	1.33
41955278--41955322	20	2.3	19	88	11	65	20	0	22	57	1.40
41962512--41962564	25	2.1	25	92	0	88	30	16	28	24	1.97
41978183--41978220	18	2.2	18	85	4	51	36	13	7	42	1.73
41990249--41990305	17	3.6	17	68	18	50	24	28	24	22	2.00
41990248--41990322	30	2.5	30	86	0	105	25	28	25	21	1.99
42004110--42004369	130	2.0	130	97	1	495	32	20	22	24	1.98
42004290--42004486	88	2.2	88	90	3	308	30	21	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42004478--42004618	45	3.2	45	77	5	126	26	19	29	24	1.98
42004504--42004649	44	3.3	42	80	8	130	26	23	25	24	2.00
42004664--42004825	50	3.2	50	73	1	164	35	22	19	23	1.96
42004639--42004825	100	1.9	100	86	2	268	32	23	20	23	1.98
42005529--42005578	23	2.0	23	82	17	57	66	12	12	10	1.46
42007709--42007827	25	4.8	25	76	13	111	26	22	24	26	2.00
42007709--42007829	50	2.4	50	83	5	147	26	22	24	26	2.00
42008996--42009028	17	1.9	17	93	0	57	45	6	0	48	1.27
42019897--42019928	16	2.0	16	93	0	55	25	15	0	59	1.36
42020156--42020447	51	5.8	50	69	16	208	30	25	18	26	1.98
42020154--42020439	101	2.8	101	91	1	466	30	24	18	26	1.98
42023547--42023623	25	3.1	25	79	3	93	25	23	23	27	2.00
42023512--42023774	50	5.2	50	68	18	148	25	23	19	31	1.98
42023666--42023773	25	4.3	25	78	2	110	24	22	23	30	1.99
42023473--42023782	155	2.0	155	96	0	575	27	23	18	30	1.97
42023709--42023791	25	3.3	24	77	9	78	25	21	25	27	1.99
42024171--42024205	17	2.1	17	89	5	54	34	20	5	40	1.76
42025172--42025215	6	7.3	6	100	0	88	0	31	0	68	0.90
42025481--42025557	35	2.2	35	78	0	82	25	18	24	31	1.97
42041576--42041621	9	5.1	9	94	0	83	45	13	10	30	1.77
42050067--42050137	19	3.6	19	70	12	63	52	2	30	14	1.56
42050067--42050137	20	3.7	20	70	12	67	52	2	30	14	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42050942--42051056	23	4.9	24	76	12	96	32	6	4	56	1.46
42050904--42051179	24	12.0	23	69	14	135	35	6	4	54	1.45
42051014--42051192	69	2.6	68	76	8	175	36	6	3	53	1.44
42051133--42051191	24	2.4	23	77	22	59	35	1	3	59	1.24
42051238--42051282	23	2.0	23	86	8	65	33	6	4	55	1.46
42054667--42054709	22	2.0	22	90	0	68	69	13	2	13	1.28
42057001--42057759	44	17.6	44	72	10	439	30	19	22	27	1.98
42057087--42057764	173	3.9	173	85	3	859	30	19	22	27	1.98
42057001--42057636	129	4.9	125	75	12	359	29	19	22	27	1.98
42058172--42058237	19	3.4	19	78	12	80	48	4	33	13	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145