genome.fa.s2.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  102  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34159805--34159938	3	44.7	3	92	3	216	66	2	1	29	1.13
34159807--34159986	21	7.9	23	75	17	62	64	3	2	29	1.23
34160384--34160414	16	1.9	16	100	0	62	83	0	3	12	0.75
34165884--34165955	35	2.1	35	100	0	144	20	19	11	48	1.79
34168444--34168486	22	2.0	21	82	8	52	13	0	34	51	1.42
34169086--34169125	20	2.0	20	85	0	53	50	15	10	25	1.74
34175864--34175914	13	3.9	13	86	0	66	31	5	29	33	1.81
34182767--34182946	72	2.7	66	85	8	238	56	15	5	22	1.60
34182812--34182965	72	2.1	72	91	0	254	55	15	5	24	1.61
34183394--34183441	18	2.7	18	96	0	87	39	12	12	35	1.81
34186262--34186286	12	2.1	12	100	0	50	52	16	16	16	1.76
34188955--34189145	96	2.0	96	90	0	301	43	8	19	27	1.80
34189377--34189420	23	1.9	23	85	0	61	31	4	6	56	1.46
34189900--34190005	53	2.0	53	96	0	194	40	6	19	33	1.78
34198534--34198721	51	3.7	50	80	3	218	27	15	25	31	1.96
34205824--34206058	117	2.0	117	98	0	452	37	17	19	25	1.93
34206430--34206465	17	2.1	17	94	0	63	25	22	2	50	1.63
34211271--34211320	25	2.0	25	96	3	93	46	12	24	18	1.82
34212021--34212081	29	2.1	29	84	6	79	14	4	8	72	1.26
34216097--34216825	364	2.0	365	99	0	1442	36	15	14	34	1.88
34217538--34217679	42	3.6	42	75	16	176	30	28	17	22	1.97
34218007--34218063	30	1.9	30	85	7	80	29	17	7	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34224949--34225150	102	2.0	102	93	1	343	31	27	20	19	1.97
34225052--34225188	42	3.5	42	76	17	175	32	28	18	20	1.97
34225050--34225225	75	2.3	75	95	0	307	31	27	19	21	1.97
34224914--34225251	177	1.9	177	93	1	588	31	27	20	20	1.97
34231912--34232078	85	2.0	86	91	1	273	25	13	19	41	1.87
34234469--34234611	49	2.9	49	84	2	198	30	14	9	44	1.78
34238993--34239118	49	2.6	48	88	6	182	30	10	11	47	1.73
34240061--34240095	17	2.1	17	88	0	52	65	11	5	17	1.43
34241726--34241796	14	4.9	15	86	8	103	26	18	25	29	1.98
34241726--34241798	29	2.5	30	89	10	109	27	17	24	30	1.97
34245343--34245394	6	8.7	6	100	0	104	34	17	17	30	1.93
34247149--34247178	14	2.1	14	100	0	60	16	13	33	36	1.88
34247232--34247273	20	2.0	20	86	9	57	38	4	21	35	1.75
34248043--34248079	19	1.9	19	94	0	65	16	21	27	35	1.94
34248052--34248113	19	3.3	19	86	0	79	22	29	24	24	1.99
34250136--34250252	62	1.9	59	86	5	162	43	5	2	48	1.38
34252342--34252405	32	2.0	32	96	0	119	31	29	15	23	1.95
34256203--34256231	15	1.9	15	100	0	58	13	10	6	68	1.37
34267885--34267945	25	2.4	25	78	10	63	37	3	1	57	1.25
34269303--34269357	27	2.0	27	100	0	110	32	21	29	16	1.95
34285339--34285382	17	2.6	17	85	7	54	38	22	4	34	1.75
34286757--34286820	30	2.2	29	83	8	76	31	1	1	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34286806--34286846	9	4.4	9	84	6	55	21	2	4	70	1.18
34286806--34286856	19	2.8	18	87	3	66	25	1	3	68	1.17
34297382--34297421	21	1.9	22	85	10	57	30	5	15	50	1.65
34302536--34302709	50	3.5	50	84	1	215	17	28	24	28	1.98
34302536--34302763	100	2.2	103	80	6	239	20	27	23	28	1.99
34306263--34306308	20	2.3	20	96	0	83	30	2	6	60	1.34
34312563--34312591	15	1.9	15	100	0	58	34	31	6	27	1.83
34317421--34317461	21	2.0	21	85	0	55	43	17	12	26	1.84
34320330--34320518	93	2.0	93	95	0	342	32	15	15	35	1.89
34325357--34325388	17	1.9	16	93	6	55	78	0	15	6	0.95
34327467--34327502	2	18.0	2	100	0	72	0	50	0	50	1.00
34345174--34345667	44	11.2	44	63	11	170	27	28	23	20	1.99
34345163--34345732	88	6.5	88	92	0	899	28	27	24	20	1.99
34345746--34346074	44	7.7	44	78	8	338	26	18	27	27	1.98
34345764--34345992	123	1.9	123	90	1	370	28	15	27	28	1.96
34346376--34346495	44	2.8	44	81	8	138	29	20	22	28	1.98
34346378--34346631	128	2.0	129	83	3	325	29	19	21	29	1.98
34348022--34348087	34	1.9	35	84	9	91	22	1	4	71	1.13
34348469--34348566	45	2.2	45	100	0	196	41	8	15	34	1.77
34348681--34348764	42	2.0	42	97	0	159	26	9	22	41	1.84
34357404--34357700	152	2.0	152	100	0	594	29	20	9	40	1.83
34358134--34358323	45	4.2	45	81	6	163	34	24	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34362586--34362616	2	15.5	2	100	0	62	51	0	0	48	1.00
34369425--34369497	19	3.8	19	81	0	101	32	16	10	39	1.83
34369747--34370274	44	12.2	44	69	12	261	27	21	20	31	1.98
34369709--34370274	217	2.6	216	94	0	961	27	21	20	30	1.98
34370297--34370475	44	4.1	44	64	13	116	25	22	21	31	1.98
34370267--34370722	132	3.5	132	92	0	707	25	23	19	32	1.97
34370267--34370865	264	2.4	246	86	5	813	24	23	19	32	1.98
34370609--34370836	114	2.0	114	94	1	404	21	26	18	32	1.97
34372075--34372117	20	2.2	20	86	0	59	9	18	0	72	1.11
34372081--34372126	20	2.2	21	84	7	58	6	21	0	71	1.08
34378042--34378116	19	3.8	19	84	6	105	32	16	13	38	1.87
34378053--34378115	21	3.1	21	81	9	94	34	14	11	39	1.81
34384175--34384217	19	2.3	19	95	0	77	32	4	20	41	1.73
34384184--34384225	19	2.2	19	95	0	75	33	4	21	40	1.74
34387585--34387763	44	4.1	44	90	2	279	50	11	8	28	1.69
34399190--34399277	44	2.0	45	86	2	124	40	4	5	48	1.47
34399727--34399780	14	3.9	14	77	15	51	31	5	0	62	1.18
34401621--34401658	20	1.9	20	88	0	58	36	28	13	21	1.91
34402677--34402845	59	2.8	60	86	0	223	42	11	5	40	1.63
34405896--34405950	17	3.2	17	82	12	69	70	1	1	25	1.06
34405900--34405950	4	13.2	4	83	8	54	70	1	1	25	1.08
34406008--34406033	13	2.0	13	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34406091--34406116	13	2.0	13	100	0	52	76	0	0	23	0.78
34406174--34406199	13	2.0	13	100	0	52	76	0	0	23	0.78
34405924--34406270	83	4.2	83	100	0	694	64	4	9	21	1.41
34407774--34408303	94	5.8	95	71	10	236	30	18	16	34	1.93
34407774--34408718	44	20.8	44	72	10	422	29	18	17	34	1.94
34408410--34408717	45	6.9	46	77	5	233	27	19	17	36	1.94
34415703--34415750	15	3.3	14	77	8	51	25	0	29	45	1.53
34415704--34415786	14	5.9	14	72	8	60	24	1	27	46	1.60
34415951--34416001	7	7.1	7	80	4	57	17	0	39	43	1.49
34415960--34416001	22	1.9	22	90	0	66	21	0	33	45	1.52
34416270--34416578	154	2.0	155	99	0	611	47	7	6	39	1.57
34416518--34416595	41	2.0	39	87	7	113	52	5	3	38	1.42
34416655--34416933	126	2.2	126	82	3	350	34	16	18	30	1.93
34417034--34417074	20	2.0	20	95	0	73	24	43	0	31	1.54
34417926--34417966	13	3.2	13	86	6	66	14	2	29	53	1.54
34417927--34417963	12	2.9	13	88	8	58	16	2	29	51	1.58
34418620--34418685	33	2.0	33	96	0	123	43	16	6	33	1.73
34418990--34419028	20	2.0	20	89	0	60	35	5	2	56	1.35
34419098--34419396	9	33.0	9	70	11	139	42	19	2	36	1.62
34419107--34419351	56	4.3	56	85	5	328	42	20	1	36	1.62
34419094--34419339	61	4.0	61	79	9	209	42	19	1	36	1.61
34419090--34419339	117	2.1	116	87	2	358	42	19	1	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34424373--34425264	446	2.0	446	100	0	1784	32	12	21	34	1.90
34425653--34425906	43	5.9	43	90	3	370	31	23	21	23	1.98
34426093--34426129	4	9.2	4	87	0	56	70	2	2	24	1.14
34426206--34426263	20	2.9	19	82	17	73	67	1	3	27	1.17
34426296--34426346	18	2.7	19	72	22	54	70	1	7	19	1.21
34434135--34434159	10	2.5	10	100	0	50	80	8	0	12	0.92
34442046--34442092	17	2.8	17	90	3	69	27	0	17	55	1.42
34443298--34443481	46	4.0	46	90	2	282	35	8	25	30	1.86
34443298--34443481	91	2.0	92	89	3	282	35	8	25	30	1.86
34445371--34445405	6	5.8	6	100	0	70	51	31	0	17	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145