genome.fa.s2.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  105  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35235032--35235100	27	2.6	27	85	0	84	33	17	23	26	1.96
35237132--35237268	45	3.0	46	92	3	222	26	13	20	40	1.89
35237135--35237277	47	3.1	47	93	2	236	27	11	19	41	1.86
35240081--35240128	19	2.5	20	83	13	64	27	2	6	64	1.28
35240100--35240150	18	2.7	19	78	6	50	35	3	5	54	1.43
35240550--35240575	13	2.0	13	100	0	52	84	0	0	15	0.62
35242959--35242996	20	1.9	20	94	0	67	50	0	2	47	1.15
35246461--35246592	51	2.6	50	80	8	133	31	27	16	25	1.97
35253001--35253055	28	2.0	27	85	3	74	10	21	16	50	1.75
35253634--35253677	21	2.0	21	86	4	61	52	4	13	29	1.60
35253790--35253842	11	4.6	11	82	17	72	54	1	13	30	1.49
35253783--35253831	24	2.0	24	100	0	98	51	4	16	28	1.63
35257995--35258067	36	2.0	36	100	0	146	42	2	19	35	1.65
35272308--35272414	38	2.8	38	85	0	151	16	18	29	34	1.94
35275010--35275093	43	2.0	43	81	9	100	38	15	21	25	1.92
35275114--35275429	43	7.4	43	78	2	296	37	22	16	23	1.93
35275083--35275350	129	2.1	129	79	5	283	38	21	15	25	1.92
35275125--35275429	129	2.4	127	81	6	362	37	22	16	23	1.93
35277181--35277302	43	2.8	43	86	0	163	31	17	20	30	1.95
35277278--35277326	25	2.0	25	83	0	62	24	20	26	28	1.99
35295634--35295761	51	2.5	51	80	2	150	48	1	5	44	1.35
35295857--35295902	14	2.9	16	84	12	60	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35295974--35296000	12	2.2	12	100	0	54	29	7	7	55	1.55
35295701--35296064	185	2.0	186	92	0	613	38	9	6	46	1.61
35301645--35301876	82	2.8	82	83	0	302	25	18	22	33	1.97
35301691--35301864	40	4.2	41	72	15	119	23	19	22	34	1.96
35301648--35301874	123	1.8	123	84	5	307	25	18	22	33	1.97
35301645--35301871	41	5.5	41	78	4	260	25	18	22	33	1.96
35303979--35304022	15	3.0	15	90	3	63	56	6	11	25	1.58
35305530--35305585	29	1.9	29	85	7	78	23	41	17	17	1.90
35308282--35308575	43	6.8	43	80	2	268	38	24	15	22	1.93
35308236--35308570	129	2.6	129	79	2	325	37	22	15	23	1.93
35308213--35308575	86	4.2	86	76	6	324	38	22	16	22	1.93
35340838--35340862	12	2.1	12	100	0	50	48	24	8	20	1.76
35342469--35342507	20	2.0	20	90	10	62	28	7	0	64	1.21
35349034--35349124	36	2.4	37	83	8	105	41	2	4	51	1.34
35349034--35349108	11	6.8	11	71	24	52	42	1	2	53	1.23
35349171--35349217	21	2.2	22	77	11	53	48	0	8	42	1.33
35358151--35358235	33	2.6	33	81	3	109	23	9	31	35	1.87
35359753--35359814	31	2.0	31	87	6	90	43	4	11	40	1.62
35360352--35360385	3	11.3	3	100	0	68	35	0	0	64	0.94
35363325--35363358	17	2.0	17	100	0	68	47	11	11	29	1.76
35363869--35364219	172	2.0	176	93	4	602	42	11	18	27	1.84
35369723--35369857	20	6.8	20	75	9	96	30	17	10	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35369738--35369855	40	2.9	39	82	7	130	31	16	9	43	1.79
35369723--35369857	60	2.2	60	77	5	139	30	17	10	42	1.82
35371756--35371805	23	2.2	23	88	0	73	36	20	26	18	1.95
35377152--35377201	20	2.5	20	93	0	82	52	2	22	24	1.58
35381181--35381322	27	5.3	27	85	6	207	44	19	16	19	1.87
35381181--35381349	54	3.1	52	79	11	180	43	18	17	20	1.88
35381493--35381624	26	5.1	26	85	1	131	18	21	25	34	1.96
35389033--35389171	27	5.1	27	87	0	188	41	20	17	20	1.90
35389340--35389414	26	2.9	26	95	0	132	16	25	25	33	1.95
35404139--35405129	494	2.0	495	99	0	1975	41	13	11	33	1.81
35413305--35413374	20	3.4	20	75	11	70	44	22	22	10	1.83
35414357--35414402	22	2.2	22	85	11	62	19	6	2	71	1.18
35418085--35418147	32	2.0	32	87	0	90	41	6	7	44	1.59
35418891--35418920	16	1.9	16	93	6	53	36	0	0	63	0.95
35432352--35432397	23	2.0	23	100	0	92	47	8	21	21	1.77
35439930--35440076	53	2.7	55	83	5	201	24	7	16	51	1.70
35442056--35442103	10	5.0	10	82	10	64	60	2	2	35	1.20
35442056--35442102	19	2.5	18	86	10	67	61	2	2	34	1.20
35442225--35442290	19	3.3	19	73	14	62	36	1	1	60	1.15
35442242--35442299	28	2.0	28	90	3	89	37	1	1	58	1.18
35442216--35442309	39	2.5	40	81	10	117	40	1	1	57	1.13
35442418--35442471	22	2.5	21	82	8	63	57	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35442450--35442474	12	2.1	12	100	0	50	56	0	0	44	0.99
35443650--35443684	18	2.0	17	88	5	52	48	0	17	34	1.47
35456991--35457032	20	2.1	20	90	0	66	23	26	9	40	1.85
35465881--35465923	3	14.3	3	100	0	86	67	32	0	0	0.91
35468972--35469026	9	6.5	8	87	8	65	30	0	0	69	0.89
35468972--35469026	8	6.4	9	91	6	80	30	0	0	69	0.89
35468972--35469026	17	3.2	17	89	0	83	30	0	0	69	0.89
35470026--35470064	20	2.0	20	94	0	69	53	12	0	33	1.39
35470099--35470163	22	3.1	21	85	8	80	35	9	7	47	1.64
35470099--35470163	20	3.2	19	81	12	67	35	9	7	47	1.64
35470266--35470300	16	2.1	17	94	5	63	42	11	0	45	1.40
35472332--35472413	20	4.2	19	79	10	85	30	8	12	48	1.70
35473801--35473839	19	2.1	19	100	0	78	25	28	5	41	1.77
35478226--35478358	66	2.0	66	91	0	212	39	16	22	21	1.92
35482027--35482069	18	2.4	16	82	17	50	41	13	0	44	1.44
35492802--35493027	98	2.3	98	97	0	425	22	24	22	30	1.99
35492795--35493130	50	6.7	50	77	8	283	24	26	20	28	1.99
35492795--35492977	49	3.8	49	75	9	194	24	24	21	30	1.99
35504892--35504956	23	2.9	23	84	13	82	67	0	26	6	1.13
35516945--35517143	98	2.0	98	96	0	362	29	22	19	28	1.98
35522792--35522843	27	1.9	27	92	0	86	30	13	25	30	1.94
35526344--35526384	15	2.7	15	84	0	55	48	0	17	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35532396--35532437	15	2.9	15	79	6	52	71	2	0	26	0.98
35532922--35532954	5	6.8	5	93	6	59	42	0	0	57	0.98
35537639--35537713	28	2.7	28	95	0	132	32	10	16	41	1.82
35539125--35539156	16	2.0	16	93	0	55	34	0	40	25	1.56
35539144--35539239	44	2.1	46	83	7	117	30	0	29	40	1.57
35539396--35539455	27	2.2	27	91	8	95	50	0	1	48	1.11
35539475--35539680	91	2.3	90	87	6	274	45	3	3	47	1.38
35539525--35539666	47	3.1	45	67	20	114	47	3	2	45	1.34
35548316--35548354	3	13.0	3	100	0	78	0	33	0	66	0.92
35549517--35549562	21	2.2	22	77	14	53	17	30	28	23	1.97
35557499--35557533	6	5.8	6	93	0	52	17	25	0	57	1.40
35560359--35560401	17	2.4	18	80	3	52	39	0	0	60	0.97
35560386--35560440	19	2.9	18	74	12	56	27	1	5	65	1.25
35562949--35562993	19	2.3	20	80	3	56	71	6	17	4	1.25
35564678--35564765	25	3.6	24	75	11	72	21	26	21	30	1.98
35565709--35565733	13	1.9	13	100	0	50	0	8	44	48	1.32
35571796--35571849	23	2.2	24	81	15	67	14	22	24	38	1.91
35584309--35584340	15	2.2	15	94	5	57	31	3	0	65	1.08
35585436--35585547	56	2.0	56	100	0	224	28	16	26	28	1.97
35597737--35597861	50	2.4	53	85	4	166	36	12	25	25	1.92
35602767--35602802	11	3.4	10	92	7	54	27	0	0	72	0.85
35607281--35607329	19	2.5	19	86	3	62	53	8	0	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35607298--35607365	18	3.7	18	67	13	50	57	4	0	38	1.19
35611901--35612093	68	2.8	67	84	3	233	34	17	21	26	1.95
35627281--35627435	77	2.0	77	89	0	238	34	30	13	21	1.92
35629849--35629890	19	2.1	19	86	8	57	38	9	0	52	1.34
35631404--35631438	16	2.2	16	89	0	52	45	17	0	37	1.48
35632342--35632389	24	2.0	23	84	4	60	52	12	0	35	1.40
35632906--35633045	39	3.7	39	68	14	105	35	23	18	22	1.96
35637201--35637233	2	16.5	2	93	0	57	51	0	0	48	1.00
35637340--35637383	2	22.5	2	90	4	72	45	0	0	54	0.99
35639319--35639362	15	3.0	16	84	15	51	77	0	9	13	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145