genome.fa.s2.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  99  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33035804--33035849	19	2.4	19	85	10	58	43	2	0	54	1.12
33035810--33035861	19	2.8	18	80	8	59	46	1	1	50	1.23
33036848--33036897	12	4.3	11	80	12	55	68	4	0	28	1.08
33036886--33036920	14	2.4	14	90	9	52	62	0	0	37	0.95
33037450--33037480	9	3.6	9	91	8	55	58	0	0	41	0.98
33037886--33038069	100	1.8	102	87	4	275	38	20	9	31	1.85
33038132--33038182	18	2.7	19	79	11	61	60	0	0	39	0.97
33038287--33038332	19	2.4	19	85	7	58	45	2	0	52	1.13
33039759--33039793	17	2.0	18	88	5	54	17	14	5	62	1.49
33040574--33040686	33	3.4	33	81	12	124	38	0	11	49	1.39
33040742--33041634	125	7.1	126	88	2	1259	36	18	17	27	1.93
33040742--33043350	376	6.7	375	74	13	1662	36	17	17	28	1.93
33041892--33043348	125	11.5	125	88	4	1956	36	17	17	28	1.92
33041892--33043351	376	3.8	376	88	4	1979	36	17	17	28	1.92
33046838--33046872	18	1.9	18	94	0	61	42	2	28	25	1.69
33055384--33055447	32	2.0	33	96	3	121	50	9	12	28	1.71
33055617--33056112	247	2.0	247	92	2	827	36	11	16	35	1.84
33057457--33057494	10	3.5	11	86	13	53	34	0	2	63	1.09
33063357--33063395	11	3.4	11	80	13	51	51	0	2	46	1.14
33063342--33063410	24	3.0	23	72	17	63	53	0	1	44	1.09
33064394--33064457	21	3.0	22	72	9	69	18	18	25	37	1.94
33067833--33067946	39	3.1	39	63	27	104	34	0	5	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33067821--33067962	70	2.0	71	97	2	268	35	1	5	57	1.31
33069656--33070006	127	2.8	124	85	5	472	31	22	16	29	1.96
33069978--33070034	28	2.0	28	96	0	105	29	19	12	38	1.88
33071819--33071856	20	1.9	20	89	10	60	34	2	0	63	1.09
33071816--33071871	20	2.8	19	76	10	58	33	1	0	64	1.04
33080820--33080871	26	2.0	26	81	7	61	11	30	34	23	1.90
33083511--33083567	27	2.1	27	90	0	87	17	28	21	33	1.96
33087438--33087483	19	2.4	19	85	10	58	69	6	4	19	1.28
33088059--33088108	15	3.3	15	76	17	50	0	18	6	76	0.99
33090407--33090437	3	10.3	3	100	0	62	32	0	0	67	0.91
33091438--33091476	20	1.9	21	89	5	62	35	0	5	58	1.20
33092486--33092537	23	2.3	21	75	12	50	44	3	1	50	1.31
33098291--33098326	18	2.0	18	94	0	63	63	5	19	11	1.46
33113267--33113334	16	4.0	16	75	11	55	47	25	5	22	1.73
33114056--33114087	15	2.1	15	94	0	55	18	9	3	68	1.30
33122934--33123022	46	1.9	46	90	0	142	35	19	10	34	1.85
33131074--33131114	20	2.0	20	86	9	57	26	4	19	48	1.69
33134748--33134800	26	2.0	26	88	0	79	33	18	22	24	1.97
33134754--33134807	26	2.1	26	85	0	72	33	20	25	20	1.97
33134857--33135096	32	7.5	32	81	6	229	37	22	20	18	1.94
33134884--33135096	64	3.3	64	81	8	254	38	24	20	17	1.93
33134857--33135093	98	2.5	95	82	6	273	37	22	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33135096--33135149	26	2.1	26	82	0	63	35	20	22	22	1.96
33139353--33139537	92	2.0	93	98	1	363	45	8	9	36	1.67
33139507--33139564	28	2.1	28	83	6	73	50	1	5	43	1.35
33141956--33142012	19	3.0	19	76	7	62	17	35	14	33	1.90
33141945--33142032	38	2.3	39	82	4	106	14	29	17	38	1.89
33148306--33148351	19	2.3	21	81	11	60	39	8	2	50	1.46
33148309--33148365	22	2.6	20	79	17	60	40	10	1	47	1.48
33148544--33148568	4	6.2	4	100	0	50	24	0	0	76	0.80
33151395--33151445	21	2.4	21	74	6	50	52	5	17	23	1.66
33167777--33167818	7	6.0	7	94	0	66	42	0	0	57	0.99
33167992--33168045	28	1.9	28	85	7	74	50	9	7	33	1.62
33184809--33184849	21	2.0	21	85	0	55	46	24	17	12	1.82
33184838--33184941	21	5.0	21	67	0	73	40	18	25	15	1.90
33184814--33184952	42	3.3	42	81	0	170	43	18	22	15	1.87
33190854--33190933	31	2.6	31	83	0	106	43	12	18	25	1.85
33191297--33191330	18	1.9	18	94	5	61	38	0	5	55	1.24
33203188--33203225	19	2.0	20	89	5	60	31	18	13	36	1.89
33208280--33208306	5	5.4	5	100	0	54	0	18	0	81	0.69
33226066--33226416	175	2.0	176	99	0	695	36	9	14	39	1.79
33228702--33228745	17	2.6	16	82	10	52	38	2	4	54	1.33
33239627--33239810	51	3.6	49	76	7	179	25	17	27	29	1.97
33242963--33243304	179	1.9	179	95	1	623	38	11	25	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33246324--33246403	39	2.1	39	85	0	106	35	2	17	45	1.62
33250706--33250781	39	1.9	39	86	5	109	26	3	22	47	1.68
33250712--33250796	39	2.2	39	82	4	100	30	2	22	44	1.65
33251520--33251760	80	3.0	80	100	0	482	37	12	16	34	1.86
33253511--33253625	22	5.2	21	61	19	54	22	18	13	45	1.85
33253490--33253653	45	3.6	45	100	0	328	21	17	13	46	1.82
33260961--33261494	114	4.7	113	73	6	416	33	20	21	25	1.97
33260994--33261489	229	2.2	227	79	2	546	33	20	21	24	1.97
33270801--33270840	21	1.9	21	89	0	62	32	15	47	5	1.66
33271222--33271508	42	6.8	42	83	3	263	31	20	20	27	1.98
33271222--33271465	83	2.9	83	80	3	283	32	21	20	25	1.97
33272953--33272996	21	2.1	21	100	0	88	36	4	18	40	1.71
33272957--33273005	21	2.3	21	89	3	71	36	4	20	38	1.72
33278316--33278445	63	2.0	63	86	4	181	46	6	20	26	1.73
33294200--33294355	76	2.1	76	83	7	192	19	33	19	26	1.96
33296023--33296113	24	3.8	24	79	7	96	21	25	25	27	2.00
33306852--33306877	8	3.2	8	100	0	52	34	0	0	65	0.93
33310552--33310624	19	3.8	19	90	0	119	36	8	16	38	1.79
33310552--33310647	19	4.7	22	78	12	75	36	7	16	39	1.77
33317173--33317662	88	5.6	88	91	0	719	28	28	23	20	1.99
33317310--33317624	44	7.2	44	64	4	177	27	27	24	20	1.99
33317664--33317758	44	2.2	44	86	7	131	27	16	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33317679--33317783	44	2.4	44	84	6	133	29	14	27	28	1.95
33318145--33318654	44	11.7	44	70	13	227	31	20	20	27	1.98
33318132--33318524	217	1.8	217	89	1	617	30	19	21	28	1.98
33319154--33319200	19	2.3	20	85	10	60	40	6	17	36	1.75
33319144--33319195	19	2.9	17	78	10	50	40	9	15	34	1.80
33321079--33321104	9	2.9	9	100	0	52	30	34	0	34	1.58
33325883--33325917	18	1.9	18	88	11	54	45	8	14	31	1.75
33329442--33329485	22	2.0	22	100	0	88	31	27	13	27	1.94
33341979--33342058	40	2.0	40	97	0	151	33	22	25	18	1.97
33348263--33348306	18	2.4	18	92	0	70	40	45	2	11	1.53
33348347--33348389	6	7.0	6	86	5	59	62	13	4	18	1.48
33348405--33348445	9	4.6	9	93	0	64	29	9	14	46	1.77
33348925--33349114	59	3.2	59	79	8	156	18	15	26	38	1.91
33348817--33349143	30	10.9	30	70	13	188	19	15	25	40	1.90
33364854--33365289	28	15.6	28	76	8	315	35	22	16	25	1.95
33364926--33365286	29	13.0	28	78	7	269	37	21	15	25	1.93
33365214--33365292	26	3.1	25	87	7	115	35	24	18	21	1.96
33376180--33376230	23	2.2	23	83	13	61	64	5	15	13	1.46
33377380--33377428	24	2.0	25	96	4	91	38	24	12	24	1.90
33383154--33383227	21	3.5	21	80	7	96	40	2	0	56	1.13
33384229--33384279	21	2.5	21	76	20	54	31	1	1	64	1.15
33384972--33385012	18	2.3	18	91	0	64	53	4	0	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33385808--33385871	20	3.2	20	82	8	69	23	28	15	32	1.95
33388129--33388199	6	11.8	6	70	5	54	71	4	18	5	1.22
33388123--33388183	12	5.1	12	78	7	61	70	6	16	6	1.30
33388129--33388183	18	3.1	18	78	19	69	72	5	16	5	1.22
33388222--33388260	18	2.3	18	86	8	55	69	0	17	12	1.19
33389113--33389146	13	2.5	13	95	4	59	11	14	11	61	1.56
33393956--33393991	15	2.5	14	86	8	54	44	8	0	47	1.33
33398659--33398731	29	2.5	29	84	6	94	72	2	0	24	0.98
33398661--33398720	20	3.0	20	76	11	52	70	3	0	26	1.03
33398688--33398729	13	3.4	12	81	15	50	73	0	0	26	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145