Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  90  of  145  ( 17348 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30023143--30023172
15
2.0
15
93
0
51
26
0
16
56
1.40
30022608--30023492
441
2.0
442
99
0
1754
33
12
15
38
1.85
30023522--30023597
31
2.7
27
73
18
66
60
2
2
34
1.24
30023496--30023605
40
2.8
39
77
6
107
61
2
1
33
1.20
30023500--30023605
10
10.6
10
70
14
51
61
2
1
33
1.22
30027079--30027174
46
2.1
46
96
0
174
36
22
17
22
1.95
30029031--30029067
10
3.9
10
93
6
60
35
0
0
64
0.94
30029016--30029069
13
4.2
13
81
15
51
31
1
0
66
1.02
30029016--30029099
3
27.7
3
72
15
66
26
2
3
67
1.19
30032360--30032400
20
2.0
20
100
0
82
48
4
12
34
1.62
30034499--30034525
13
2.1
13
100
0
54
48
7
14
29
1.71
30042824--30042967
25
5.8
25
74
0
135
27
23
21
27
1.99
30042824--30042967
50
2.9
50
76
2
155
27
23
21
27
1.99
30056809--30056895
30
2.9
30
89
0
138
17
27
32
22
1.96
30071921--30072052
66
2.0
66
84
0
174
46
9
16
26
1.78
30074235--30074269
16
2.1
16
94
5
61
74
11
5
8
1.22
30079399--30079433
16
2.1
16
94
5
61
74
11
5
8
1.22
30094069--30094118
11
4.5
11
75
9
57
10
2
48
40
1.48
30094047--30094119
22
3.3
22
72
11
60
12
4
49
34
1.59
30105636--30105671
18
2.0
18
100
0
72
55
22
5
16
1.62
30115701--30116193
246
2.0
247
99
0
979
40
12
12
34
1.81
30117470--30117503
17
2.0
18
88
11
54
47
0
11
41
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30121373--30121452
28
2.9
28
75
7
83
38
21
15
25
1.92
30123893--30123932
19
2.1
19
86
9
55
60
5
0
35
1.19
30139186--30139215
12
2.5
12
94
0
51
23
40
30
6
1.80
30153367--30153535
42
4.0
42
100
0
338
40
18
14
26
1.90
30155504--30155571
25
2.9
23
76
8
82
41
22
19
17
1.91
30162140--30162192
25
2.2
22
78
15
52
73
7
15
3
1.20
30178730--30178772
10
4.2
10
80
14
52
79
2
0
18
0.85
30184509--30184542
6
5.7
6
90
10
52
73
11
0
14
1.10
30184509--30184545
13
2.9
13
92
4
58
72
10
0
16
1.10
30185492--30185542
14
3.6
14
77
17
61
66
1
19
11
1.33
30186853--30187335
202
2.4
200
89
2
754
32
21
22
23
1.98
30186858--30187334
50
9.5
50
70
2
328
31
21
22
23
1.98
30186853--30187335
100
4.8
100
90
1
743
32
21
22
23
1.98
30187404--30187498
44
2.1
45
84
5
122
33
15
22
28
1.95
30187437--30187526
44
2.0
45
85
6
121
32
17
22
27
1.97
30187648--30187732
44
1.9
44
95
0
152
30
21
22
25
1.98
30187693--30187942
44
5.8
44
67
8
118
34
16
19
30
1.93
30187417--30187848
232
1.9
232
91
1
706
33
18
19
28
1.95
30187694--30187977
129
2.2
129
90
0
442
32
17
19
30
1.95
30188477--30188514
18
2.1
18
85
9
51
76
5
0
18
0.97
30194087--30194157
36
2.0
36
82
0
88
29
8
9
52
1.64
30194136--30194225
36
2.5
35
83
5
110
27
15
14
42
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30197015--30197062
21
2.2
20
79
13
51
31
14
16
37
1.89
30197044--30197149
48
2.2
48
84
0
131
21
12
24
41
1.87
30198772--30198798
11
2.5
11
100
0
54
14
22
22
40
1.90
30205857--30205906
20
2.6
19
80
20
59
60
8
0
32
1.26
30205866--30205916
20
2.4
21
83
6
59
62
9
0
27
1.26
30210850--30210904
27
2.0
27
82
6
67
27
29
0
43
1.55
30223112--30223164
25
2.1
25
100
0
106
37
9
11
41
1.73
30229151--30229184
14
2.5
14
85
4
52
47
0
0
52
1.00
30229708--30230118
109
3.7
110
88
1
574
35
18
14
31
1.91
30229708--30230118
220
1.9
219
86
1
590
35
18
14
31
1.91
30230247--30230367
4
29.8
4
71
18
81
68
4
4
21
1.28
30230247--30230334
25
3.8
23
73
16
76
69
4
4
21
1.25
30230247--30230392
33
4.3
32
81
13
145
68
4
6
20
1.30
30232258--30232493
43
5.4
43
74
11
176
28
21
18
30
1.97
30232291--30232766
44
10.8
46
71
12
220
28
20
19
31
1.97
30232206--30232846
175
3.7
175
88
3
877
27
20
20
31
1.98
30232885--30233047
50
3.3
50
77
0
173
24
22
21
31
1.98
30232925--30233297
125
3.0
124
90
1
566
24
21
22
31
1.98
30232972--30233122
75
2.0
75
81
2
178
26
23
21
29
1.99
30233047--30233144
50
2.0
50
83
0
124
24
23
22
29
1.99
30233172--30233347
50
3.5
50
70
11
144
24
18
22
34
1.96
30233189--30233376
101
1.9
100
84
5
254
23
19
23
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30234669--30234727
7
8.7
7
88
7
95
15
16
0
67
1.23
30234669--30234727
13
4.4
14
91
8
95
15
16
0
67
1.23
30234672--30234727
20
2.8
20
97
0
103
14
16
0
69
1.19
30235638--30235745
50
2.1
52
83
8
132
9
11
6
73
1.26
30235706--30235776
14
4.9
14
74
17
56
12
2
9
74
1.17
30235713--30235774
12
4.8
13
80
5
65
14
3
9
72
1.23
30235711--30235781
31
2.3
30
85
9
90
12
4
8
74
1.19
30239118--30239421
111
2.8
111
89
1
432
33
18
15
32
1.92
30239544--30239664
4
29.8
4
71
18
81
68
4
4
21
1.28
30239544--30239631
25
3.8
23
73
16
76
69
4
4
21
1.25
30239544--30239689
33
4.3
32
81
13
145
68
4
6
20
1.30
30240025--30240059
3
11.7
3
87
0
52
60
0
5
34
1.21
30240028--30240059
12
2.7
12
100
0
64
59
0
6
34
1.23
30241169--30241225
3
19.0
3
96
0
105
66
1
0
31
1.02
30241774--30241801
6
4.7
6
100
0
56
85
0
0
14
0.59
30242887--30242926
20
2.0
20
90
0
62
27
10
12
50
1.72
30242872--30242938
34
1.9
35
87
3
100
32
8
11
46
1.72
30247414--30247453
12
3.3
12
85
0
53
20
30
50
0
1.49
30247409--30247442
9
3.8
9
96
0
59
17
35
47
0
1.48
30250591--30250634
23
1.9
23
86
9
63
47
9
9
34
1.67
30250778--30250823
21
2.2
20
81
11
58
56
2
2
39
1.24
30260942--30261061
41
2.9
41
81
0
141
31
24
22
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30268550--30268733
101
1.8
102
87
5
275
25
15
27
32
1.96
30268546--30268732
51
3.7
49
72
11
162
25
15
27
31
1.96
30268550--30268753
102
2.0
101
81
8
236
26
15
26
31
1.96
30286591--30286671
3
27.0
3
97
0
153
65
0
1
33
1.01
30286697--30286754
6
9.2
6
80
10
53
72
3
5
18
1.18
30288388--30288450
27
2.3
27
83
0
72
36
9
25
28
1.87
30288658--30288704
10
4.6
10
78
10
51
25
0
4
70
1.05
30288664--30288701
19
2.1
18
85
9
51
26
0
5
68
1.11
30289284--30289317
12
2.8
12
90
0
50
0
11
5
82
0.83
30290259--30290332
29
2.6
29
84
4
96
25
20
33
20
1.97
30290403--30290458
28
2.0
28
83
10
71
46
0
16
37
1.47
30290662--30290829
86
2.0
85
84
3
221
42
8
19
29
1.81
30290662--30290829
85
2.0
86
84
3
223
42
8
19
29
1.81
30294018--30294193
59
3.0
58
84
3
208
50
10
6
32
1.62
30294554--30294589
18
2.0
18
94
0
63
41
5
27
25
1.77
30301756--30301790
11
3.1
11
87
4
52
68
0
20
11
1.20
30307310--30307338
11
2.6
11
100
0
58
6
27
37
27
1.82
30309258--30309303
5
9.0
5
97
2
83
41
0
0
58
0.98
30312065--30312239
87
2.0
87
96
0
323
27
17
22
32
1.97
30318691--30318722
15
2.2
14
94
5
55
84
0
12
3
0.74
30319887--30319911
13
1.9
13
100
0
50
56
12
0
32
1.36
30322581--30322657
14
5.8
14
83
6
90
31
5
23
40
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30322581--30322638
27
2.1
28
87
3
82
29
6
22
41
1.80
30323673--30323697
11
2.3
11
100
0
50
72
0
12
16
1.13
30323698--30323732
18
1.9
18
100
0
70
68
20
0
11
1.20
30350484--30350523
21
1.9
21
89
0
62
42
10
27
20
1.83
30352816--30352989
84
2.1
84
100
0
348
25
9
27
37
1.87
30353818--30353971
25
6.2
25
73
6
132
24
13
25
37
1.92
30353843--30353961
50
2.4
50
89
0
184
22
15
24
36
1.94
30353815--30353954
75
1.9
75
83
5
185
23
14
24
37
1.92
30358703--30358755
26
2.0
26
82
7
63
45
18
0
35
1.50
30361218--30361275
19
3.1
19
94
0
98
20
6
17
55
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145