genome.fa.s2.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  51  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16649668--16650006	132	2.6	132	90	2	520	26	20	24	28	1.99
16649997--16650186	44	4.3	44	75	1	182	28	14	25	31	1.95
16650005--16650169	89	1.9	88	83	1	213	30	13	26	29	1.94
16650003--16650258	133	1.9	133	83	1	334	28	15	25	30	1.96
16651937--16652009	3	24.3	3	91	5	121	31	1	1	65	1.09
16654735--16654776	16	2.6	17	77	11	52	38	0	0	61	0.96
16659226--16659349	49	2.5	49	89	0	185	22	13	31	32	1.93
16664913--16664990	31	2.5	31	87	0	102	35	14	10	39	1.80
16665559--16665583	2	12.5	2	100	0	50	48	0	0	52	1.00
16666597--16666646	25	2.0	25	84	7	66	32	0	4	64	1.12
16668749--16668798	25	2.0	25	84	7	66	32	0	4	64	1.12
16669527--16669568	18	2.3	18	84	12	50	69	9	0	21	1.17
16669618--16669677	29	2.1	29	93	0	102	53	13	10	23	1.69
16669680--16669738	30	2.0	30	89	0	91	59	10	3	27	1.46
16669670--16669894	112	2.0	113	96	0	416	56	10	8	24	1.62
16669792--16669850	30	2.0	30	89	0	91	57	8	3	30	1.45
16671277--16671323	23	2.0	24	87	4	69	27	6	2	63	1.30
16673977--16674020	21	2.1	21	95	0	79	56	9	29	4	1.50
16685975--16686286	156	2.0	156	84	1	401	31	18	8	41	1.81
16686964--16687151	51	3.7	51	82	2	252	31	27	17	24	1.97
16686963--16687147	102	1.8	102	100	0	370	31	26	17	24	1.97
16699582--16699853	138	2.0	138	97	0	517	28	6	22	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16701166--16701195	3	10.0	3	100	0	60	33	0	33	33	1.58
16728706--16728756	25	2.1	24	81	3	57	66	3	0	29	1.09
16728713--16728848	71	1.9	70	90	1	218	58	10	0	30	1.36
16737252--16737297	3	15.3	3	100	0	92	32	0	0	67	0.91
16739892--16739945	19	3.0	17	75	5	54	70	3	18	7	1.26
16748527--16748812	39	7.5	39	81	7	302	33	17	32	16	1.93
16748632--16748756	19	6.4	20	71	17	95	31	19	36	13	1.90
16748521--16748812	77	3.8	77	85	4	342	33	18	31	16	1.93
16754729--16754762	16	2.2	15	89	5	50	55	0	0	44	0.99
16755902--16756791	295	3.0	295	99	0	1762	29	19	17	34	1.94
16763690--16763737	10	4.6	10	82	10	51	64	2	0	33	1.05
16767030--16767118	47	1.9	46	93	2	151	30	12	28	29	1.93
16767512--16767575	26	2.5	26	84	0	74	40	12	10	35	1.78
16768581--16768655	25	3.0	25	90	0	123	36	14	12	37	1.83
16772621--16772677	25	2.3	25	84	3	71	28	24	22	24	2.00
16778063--16778136	26	2.9	26	84	6	89	36	8	18	36	1.81
16778075--16778136	26	2.4	26	86	2	90	35	8	20	35	1.83
16782423--16782451	15	1.9	15	100	0	58	62	6	10	20	1.50
16783900--16783941	18	2.3	18	100	0	84	50	26	0	23	1.50
16783874--16783974	51	2.0	51	84	3	132	49	16	5	27	1.69
16783918--16784027	33	3.3	33	83	3	159	46	14	7	31	1.72
16788092--16788183	45	2.1	44	83	2	112	35	28	5	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16788163--16788214	16	3.2	16	91	0	86	40	32	0	26	1.57
16800796--16800853	25	2.2	25	87	6	80	53	1	3	41	1.28
16800793--16800840	25	1.9	25	95	0	87	52	2	4	41	1.32
16811006--16811328	41	7.9	41	96	2	571	0	29	0	70	0.90
16811233--16811357	29	4.6	27	74	19	91	0	29	0	69	0.94
16811404--16811474	27	2.6	27	90	0	115	16	32	23	26	1.96
16813017--16813100	30	3.0	28	76	20	86	39	7	1	52	1.37
16813157--16813187	7	4.6	7	96	4	55	77	0	0	22	0.77
16813156--16813192	14	2.6	14	86	4	56	72	0	0	27	0.84
16815785--16815828	21	2.0	22	86	4	63	61	0	0	38	0.96
16826566--16826590	9	2.8	9	100	0	50	32	0	0	68	0.90
16826529--16826632	51	2.1	49	80	8	111	41	0	2	55	1.14
16829875--16829927	23	2.3	23	87	9	74	47	5	5	41	1.51
16830879--16830931	23	2.3	23	87	9	74	47	5	5	41	1.51
16832540--16832566	14	1.9	14	100	0	54	7	29	11	51	1.64
16832889--16833823	92	10.1	92	99	0	1834	40	6	4	48	1.48
16840195--16840263	21	3.3	21	83	0	84	37	20	40	1	1.61
16840252--16840287	12	3.0	12	91	0	54	44	16	36	2	1.63
16840451--16840953	42	12.0	42	98	0	943	24	17	23	34	1.96
16841047--16841089	22	2.0	22	90	0	68	48	27	13	9	1.73
16841247--16841303	18	3.1	18	73	9	51	24	14	14	47	1.80
16858428--16858597	85	2.0	85	89	0	259	31	22	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16860918--16860947	12	2.5	12	94	0	51	23	20	13	43	1.86
16863321--16863351	16	1.9	16	93	0	53	35	6	12	45	1.68
16866502--16866549	25	1.9	25	83	8	62	18	4	14	62	1.47
16870927--16871055	63	2.0	63	94	2	224	34	14	13	37	1.85
16875138--16875171	17	2.1	17	88	5	52	41	5	8	44	1.60
16878088--16878135	24	2.0	24	83	0	60	54	14	0	31	1.41
16880808--16880834	14	1.9	14	100	0	54	59	0	0	40	0.98
16881256--16881311	20	2.9	20	94	5	98	14	17	19	48	1.81
16882805--16882887	35	2.3	36	79	4	96	45	30	13	10	1.77
16891229--16891333	20	5.3	19	71	6	84	33	16	34	16	1.91
16891209--16891388	79	2.2	81	87	1	247	32	16	31	20	1.94
16891209--16891391	40	4.6	41	88	3	248	32	16	31	20	1.94
16891459--16891503	22	2.0	22	100	0	90	44	13	8	33	1.75
16894160--16894271	34	3.3	33	80	5	107	33	9	14	41	1.78
16897212--16897247	12	3.0	12	95	0	63	33	27	5	33	1.80
16900566--16900599	12	2.9	12	86	4	52	32	0	0	67	0.91
16900719--16900787	30	2.3	30	97	0	129	62	8	0	28	1.25
16904256--16904283	3	9.3	3	100	0	56	0	32	0	67	0.91
16904380--16904405	4	6.5	4	100	0	52	26	0	0	73	0.84
16908707--16908774	33	2.1	33	100	0	136	48	11	26	13	1.76
16915099--16915172	29	2.3	30	80	19	80	60	4	2	32	1.29
16915123--16915193	29	2.5	28	76	21	67	67	4	4	23	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16915968--16916221	124	2.1	123	93	0	436	29	16	22	31	1.96
16921860--16921891	16	2.1	16	94	5	57	56	3	0	40	1.15
16925284--16925566	141	2.0	142	97	2	543	42	9	5	42	1.60
16926134--16926160	4	6.8	4	100	0	54	25	0	25	48	1.52
16927419--16927564	76	1.9	76	94	2	258	36	17	19	27	1.94
16932063--16932136	20	3.8	19	76	16	80	37	14	5	41	1.69
16932066--16932143	39	2.0	41	92	5	133	37	14	5	43	1.67
16932063--16932148	20	4.4	19	76	16	77	37	13	6	41	1.72
16940905--16940947	19	2.3	19	87	0	59	39	2	4	53	1.34
16942383--16942446	25	2.8	22	77	13	74	39	18	20	21	1.93
16942396--16942454	25	2.4	25	88	0	91	40	16	20	22	1.91
16947758--16947823	25	2.6	25	88	9	89	19	16	6	57	1.60
16948885--16948931	12	3.9	12	81	15	53	85	2	10	2	0.78
16948886--16948933	7	6.7	7	81	11	53	85	2	10	2	0.77
16948883--16948999	13	8.8	13	71	18	55	80	3	10	5	1.00
16948881--16948974	20	4.7	20	75	7	75	79	4	7	8	1.04
16949826--16949940	61	1.9	59	85	7	160	50	15	15	18	1.78
16951546--16951645	44	2.3	44	82	3	121	25	21	22	32	1.98
16951747--16952009	44	6.0	44	69	14	168	30	17	25	27	1.97
16951257--16952014	175	4.3	175	87	2	1110	30	18	25	25	1.98
16960041--16960074	17	2.0	17	94	0	59	32	29	5	32	1.81
16968974--16969039	28	2.4	27	78	12	71	24	4	4	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974236--16974278	16	2.6	16	81	7	50	72	0	20	6	1.08
16975084--16975168	44	1.9	44	97	0	161	41	14	14	30	1.85
16977788--16977992	102	2.0	102	99	0	401	35	12	18	33	1.89
16982009--16982154	41	3.6	40	77	12	138	28	28	19	23	1.99
16982009--16982174	82	2.0	83	81	10	198	28	26	18	25	1.98
16990298--16990360	30	2.1	30	96	0	117	26	28	3	41	1.71
16990327--16990367	21	2.0	21	85	0	55	24	24	2	48	1.63
16991795--16991858	30	2.1	30	85	5	85	37	1	25	35	1.65
16992248--16992359	50	2.3	46	74	11	116	24	23	31	21	1.98
16992264--16992367	50	2.1	50	85	0	136	25	24	29	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145