genome.fa.s2.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  104  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34911457--34911540	40	2.1	40	95	2	152	11	39	2	46	1.54
34913353--34913381	12	2.5	12	94	5	51	37	0	20	41	1.53
34920618--34920718	44	2.3	42	77	15	107	28	25	19	25	1.99
34927908--34928017	44	2.5	43	76	7	123	29	30	18	22	1.97
34940385--34940437	26	2.0	26	85	0	70	60	7	1	30	1.35
34940391--34940465	18	4.3	18	78	6	66	65	4	1	29	1.19
34942036--34942416	173	2.2	172	80	5	412	26	22	22	28	1.99
34942301--34942855	132	4.2	131	86	5	748	24	23	21	30	1.99
34942622--34942805	44	4.2	44	65	15	110	26	23	21	29	1.99
34942336--34942812	257	1.9	257	92	0	801	25	23	20	31	1.98
34944648--34944833	90	2.1	91	96	3	349	26	20	13	39	1.90
34947379--34947451	36	2.0	36	100	0	146	15	30	13	41	1.85
34949075--34949103	12	2.4	12	100	0	58	20	41	6	31	1.79
34951021--34951066	24	1.9	24	86	0	65	10	23	17	47	1.79
34955547--34955599	26	2.0	26	85	0	70	60	7	1	30	1.35
34955553--34955627	18	4.3	18	78	6	66	65	4	1	29	1.19
34956990--34957083	47	2.0	47	93	4	163	41	6	5	46	1.52
34958924--34958981	3	19.3	3	96	0	107	65	0	1	32	1.03
34960330--34960380	10	5.2	10	77	11	52	74	1	0	23	0.92
34960330--34960390	30	2.0	29	84	12	79	72	1	0	26	0.94
34961653--34961696	23	1.9	23	85	0	61	13	27	15	43	1.85
34966484--34966517	6	5.7	6	85	0	50	32	0	20	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34971514--34971586	38	1.9	38	97	0	137	41	17	12	28	1.86
34972618--34972697	34	2.4	34	95	0	142	43	32	11	12	1.78
34973328--34973357	16	1.9	16	93	6	53	50	20	0	30	1.49
34990137--34990161	12	2.1	12	100	0	50	36	16	32	16	1.90
34991836--34992058	91	2.4	92	83	4	281	37	21	9	30	1.86
34992082--34992151	30	2.6	25	80	15	77	65	0	1	32	1.01
34992092--34992152	27	2.1	30	85	8	83	67	0	0	32	0.91
34992092--34992152	29	2.1	30	81	9	72	67	0	0	32	0.91
34992082--34992151	10	7.6	9	74	16	63	65	0	1	32	1.01
34992122--34992158	16	2.3	16	90	0	56	72	0	0	27	0.84
34992182--34992220	20	1.9	21	84	5	53	28	2	5	64	1.28
34992229--34992423	89	2.2	89	82	3	234	35	8	16	38	1.80
34998845--34998869	13	1.9	13	100	0	50	20	16	8	56	1.65
34999359--34999426	29	2.3	29	97	0	127	36	22	11	29	1.89
35000520--35000548	15	1.9	15	100	0	58	62	24	6	6	1.45
35002796--35002900	52	2.0	52	92	0	174	36	25	7	30	1.84
35003515--35003551	16	2.3	16	100	0	74	21	24	10	43	1.84
35004893--35004933	21	2.0	21	90	0	64	24	2	24	48	1.63
35016513--35016543	2	15.5	2	100	0	62	51	0	0	48	1.00
35017164--35017203	18	2.2	18	86	0	53	27	0	2	70	1.01
35017234--35017277	3	15.0	3	90	4	72	65	2	0	31	1.05
35021375--35021409	3	11.7	3	93	0	61	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35023851--35023881	11	2.7	11	95	5	53	45	0	0	54	0.99
35037696--35037736	13	3.2	13	75	25	50	0	31	21	46	1.52
35040729--35040768	18	2.2	18	90	0	62	32	15	12	40	1.84
35041197--35041433	72	3.3	72	86	4	313	24	7	13	54	1.64
35041197--35041458	142	1.8	142	81	4	323	25	6	13	54	1.63
35043101--35043150	17	2.8	18	72	22	52	54	6	4	36	1.44
35047591--35047637	22	2.1	23	88	4	69	17	4	31	46	1.67
35047695--35047762	28	2.4	29	87	2	93	45	0	11	42	1.40
35047784--35047838	28	2.0	27	85	3	74	38	1	18	41	1.61
35047910--35048178	125	2.2	127	85	6	363	40	13	16	28	1.87
35049092--35049223	59	2.2	59	85	7	171	53	5	5	36	1.47
35051348--35051386	12	3.6	11	86	13	55	58	0	15	25	1.37
35051646--35051706	29	2.1	30	81	9	72	37	14	18	29	1.90
35056548--35056577	1	30.0	1	100	0	60	0	0	0	100	0.00
35056592--35056623	1	32.0	1	93	0	55	0	3	0	96	0.20
35061572--35061787	107	2.0	108	99	0	425	52	6	2	37	1.42
35066932--35067019	43	2.1	40	76	15	97	28	28	26	17	1.97
35066964--35067409	129	3.5	129	83	4	506	25	30	19	24	1.98
35066942--35067343	43	9.3	43	89	3	526	27	31	18	22	1.97
35067007--35067385	43	8.8	41	83	6	184	25	31	18	24	1.97
35067485--35067576	21	4.4	21	80	0	103	5	40	16	38	1.71
35067538--35067717	66	2.7	65	85	5	227	12	27	20	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35084035--35084095	21	3.0	20	80	7	77	36	26	22	14	1.93
35084529--35084760	118	2.0	114	94	3	401	37	17	0	45	1.52
35099849--35100163	27	11.7	27	81	2	222	33	16	20	29	1.94
35099852--35100151	54	5.6	54	78	3	280	34	16	19	29	1.94
35099849--35100098	81	3.1	81	77	3	261	34	16	20	29	1.94
35102817--35102881	31	2.1	32	85	8	89	16	4	20	58	1.56
35103390--35103705	27	11.7	27	81	2	294	36	17	18	27	1.93
35103390--35103705	81	3.9	81	82	1	346	36	17	18	27	1.93
35106018--35106247	124	1.9	123	88	0	352	34	16	15	33	1.91
35107943--35107999	19	3.0	18	82	7	60	40	1	10	47	1.48
35108919--35108973	22	2.5	22	81	0	65	20	25	14	40	1.90
35109740--35109782	18	2.3	19	84	4	52	53	13	4	27	1.60
35113588--35113662	25	3.0	25	96	0	132	33	37	14	14	1.87
35118758--35120254	749	2.0	747	96	0	2791	29	15	18	36	1.91
35131198--35131296	35	2.8	35	76	13	103	41	1	4	53	1.26
35133151--35133185	16	2.3	15	90	5	52	68	0	28	2	1.04
35137543--35137625	43	1.9	43	92	0	139	21	14	24	39	1.91
35138770--35138823	20	2.8	19	85	2	72	33	22	0	44	1.53
35140884--35140934	24	2.1	24	85	0	66	31	11	11	45	1.77
35141598--35141784	35	5.4	35	76	3	137	22	21	18	37	1.94
35149056--35149110	17	3.3	15	82	14	56	54	3	3	38	1.36
35151406--35151465	24	2.5	24	89	2	86	25	11	20	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35156693--35156731	13	3.2	12	86	10	53	56	0	0	43	0.99
35164373--35164437	29	2.2	29	97	0	121	10	12	4	72	1.26
35165291--35165342	25	2.1	25	92	7	88	25	26	9	38	1.86
35167745--35167789	14	3.1	14	80	3	54	42	17	8	31	1.80
35170993--35171025	15	2.3	15	94	5	59	51	3	0	45	1.16
35171034--35171073	16	2.5	16	87	0	53	42	0	0	57	0.98
35171372--35171578	103	2.0	103	97	0	387	32	11	25	30	1.90
35173570--35173615	9	5.1	9	94	0	83	30	10	13	45	1.77
35174437--35174505	28	2.6	26	80	11	77	1	24	2	71	1.09
35176416--35176468	23	2.3	23	93	0	97	20	20	26	32	1.98
35183997--35184039	22	2.0	22	90	0	68	16	20	25	37	1.93
35184075--35184497	43	9.8	43	90	3	611	25	31	18	23	1.98
35184888--35184980	42	2.2	42	84	3	116	7	44	13	34	1.73
35184888--35184999	21	5.3	21	78	4	91	7	42	15	34	1.74
35184971--35185115	66	2.2	66	87	4	204	13	28	17	40	1.88
35189181--35189216	16	2.2	16	95	0	63	33	0	19	47	1.50
35189190--35189296	53	2.0	54	94	1	189	31	1	18	47	1.59
35189220--35189289	20	3.2	20	74	18	68	31	1	17	50	1.55
35193635--35193703	36	1.9	36	90	0	111	26	15	14	43	1.85
35194308--35194348	21	2.0	20	85	4	55	39	41	0	19	1.52
35195246--35195338	41	2.3	42	79	3	100	33	26	20	19	1.96
35196349--35196417	21	3.2	21	77	10	68	72	0	24	2	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35196356--35196407	20	2.5	20	81	9	61	71	0	25	3	1.03
35196972--35197107	68	2.1	65	84	9	172	34	13	7	44	1.72
35203144--35203183	16	2.5	16	83	0	53	40	35	2	22	1.68
35203726--35203770	3	15.0	3	100	0	90	33	0	0	66	0.92
35203921--35203954	4	9.0	4	87	12	54	52	0	0	47	1.00
35204237--35204306	9	7.6	9	84	6	95	24	8	31	35	1.85
35210591--35210620	7	4.3	7	100	0	60	56	0	0	43	0.99
35214825--35215010	50	3.7	50	82	5	198	28	22	29	20	1.98
35227168--35227212	22	2.0	22	82	0	54	51	2	15	31	1.56
35229097--35229133	19	1.9	18	89	10	56	51	8	2	37	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145