genome.fa.s2.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  106  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35641906--35641961	24	2.3	24	84	0	76	42	30	23	3	1.71
35642191--35642274	29	3.0	27	84	10	114	48	26	0	25	1.51
35642168--35642260	29	2.9	34	78	15	106	45	29	1	24	1.60
35661048--35661079	7	4.7	7	92	7	57	59	0	0	40	0.97
35661037--35661079	13	3.3	13	87	9	61	55	0	0	44	0.99
35661477--35661519	20	2.3	18	84	8	50	37	4	2	55	1.33
35664340--35664752	194	2.2	190	85	4	537	27	23	19	29	1.98
35664817--35665648	44	18.7	44	73	8	330	27	21	18	32	1.97
35664996--35665376	133	2.9	132	85	1	492	26	21	18	33	1.96
35665042--35665658	178	3.5	178	84	2	758	26	22	18	32	1.97
35667864--35667911	10	4.8	11	75	19	52	0	29	0	70	0.87
35679034--35679172	41	3.4	41	89	3	201	25	22	12	39	1.89
35684227--35684363	41	3.4	40	86	3	193	25	22	12	39	1.89
35687622--35687797	41	4.3	41	86	1	246	25	17	24	32	1.97
35687622--35687797	81	2.2	82	86	3	257	25	17	24	32	1.97
35689176--35689340	87	1.9	87	91	2	267	55	7	1	35	1.35
35689259--35689398	70	2.0	71	93	6	241	52	7	1	38	1.40
35695152--35695206	28	2.0	28	92	0	92	20	27	18	34	1.95
35695730--35695783	24	2.2	24	83	0	63	42	22	20	14	1.88
35700129--35700168	20	2.0	21	90	5	64	60	2	0	37	1.11
35702415--35702455	19	2.1	20	86	13	59	31	9	2	56	1.45
35704320--35704596	137	2.0	137	100	0	554	24	21	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35706100--35706231	34	3.8	34	75	8	131	59	11	9	18	1.58
35706215--35706301	40	2.2	40	85	2	111	57	11	2	28	1.46
35711085--35711115	3	10.7	3	93	6	55	64	0	35	0	0.94
35712112--35712175	22	2.9	22	78	0	65	54	10	15	18	1.70
35713641--35713694	20	2.5	21	77	11	56	51	1	1	44	1.22
35714199--35714239	16	2.6	17	85	11	52	58	4	0	36	1.20
35715727--35715766	17	2.4	17	87	8	55	57	20	0	22	1.41
35717507--35717568	19	3.3	19	74	14	65	37	1	0	61	1.06
35717610--35717798	94	2.0	95	98	1	371	56	5	9	28	1.53
35723826--35723861	17	2.1	18	94	5	65	8	16	5	69	1.33
35724483--35724542	3	20.7	3	73	13	54	28	1	3	66	1.17
35724490--35724552	16	4.1	17	75	19	66	28	1	4	65	1.22
35724483--35724555	21	3.1	24	77	16	73	28	1	4	65	1.19
35727497--35727550	26	2.1	26	100	0	108	40	29	11	18	1.85
35731393--35731676	88	3.2	88	87	4	385	26	20	26	26	1.99
35731391--35731647	44	5.8	44	91	1	390	26	19	26	26	1.99
35731391--35731688	132	2.3	132	85	3	350	27	20	26	26	1.99
35733272--35733320	21	2.3	21	86	10	64	28	2	4	65	1.22
35733251--35733317	24	3.0	22	76	18	66	26	1	4	67	1.19
35733253--35733323	22	3.2	22	77	18	67	26	1	4	67	1.17
35738105--35738160	25	2.2	24	79	14	60	12	7	1	78	1.02
35739206--35739238	17	1.9	17	100	0	66	45	12	30	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35741694--35741748	25	2.2	25	93	0	92	23	27	3	45	1.69
35746667--35746716	21	2.4	21	79	0	55	38	20	38	4	1.71
35751726--35751780	27	2.1	26	90	10	85	40	3	3	52	1.36
35752839--35752911	21	3.2	22	73	9	67	60	0	0	39	0.97
35752858--35752903	17	2.6	19	77	22	55	56	0	0	43	0.99
35752843--35752903	12	5.2	12	76	13	65	57	0	0	42	0.98
35754726--35754784	25	2.3	27	82	8	77	20	6	5	67	1.33
35762366--35762473	41	2.7	41	83	1	119	30	19	20	29	1.97
35774751--35774776	3	8.7	3	100	0	52	65	0	34	0	0.93
35779433--35779457	12	2.1	12	100	0	50	8	16	0	76	1.02
35781955--35781996	16	2.8	16	89	7	61	40	4	0	54	1.21
35783922--35783997	37	2.1	37	94	0	134	27	27	15	28	1.96
35785391--35785432	2	21.0	2	100	0	84	0	50	0	50	1.00
35787929--35788027	40	2.6	36	81	10	110	39	4	7	49	1.49
35787973--35788042	16	4.7	16	69	16	60	34	1	10	54	1.43
35788082--35788127	22	2.1	22	84	8	58	58	4	2	34	1.30
35788749--35788790	21	2.0	21	100	0	84	23	9	28	38	1.86
35793325--35793377	19	3.0	17	76	10	61	35	18	7	37	1.80
35793296--35793353	22	2.6	22	78	7	64	43	17	5	34	1.71
35798431--35798488	22	2.6	22	81	7	64	44	17	1	36	1.59
35798460--35798512	19	3.0	17	73	10	52	33	20	9	35	1.85
35818794--35818877	41	2.0	41	97	0	159	55	8	9	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35829151--35829300	56	2.6	56	85	4	167	39	17	24	18	1.92
35829876--35829900	13	1.9	13	100	0	50	76	0	0	24	0.80
35833946--35834117	53	3.2	52	85	6	238	25	22	1	51	1.55
35834687--35834905	113	1.9	112	86	4	307	33	20	15	30	1.94
35834908--35835016	56	1.9	56	83	3	139	20	22	17	39	1.92
35836287--35836375	36	2.5	36	74	18	87	49	2	2	46	1.26
35843763--35843831	20	3.3	20	76	13	68	59	5	0	34	1.21
35846836--35846875	19	2.1	19	86	9	55	37	2	5	55	1.35
35857153--35857199	24	2.0	24	84	16	62	31	0	17	51	1.46
35857177--35857226	15	3.2	15	76	20	57	36	0	14	50	1.43
35857359--35857468	37	2.8	40	76	9	127	24	17	25	32	1.96
35859421--35859446	4	6.5	4	100	0	52	76	0	23	0	0.78
35866745--35866785	9	4.6	9	90	0	64	43	21	9	24	1.83
35866793--35866853	17	3.4	17	68	12	50	50	13	3	32	1.57
35866784--35866858	37	2.0	37	97	0	141	45	14	5	34	1.68
35866784--35866875	37	2.5	37	89	7	125	46	14	5	33	1.67
35866987--35867102	38	3.0	38	93	2	196	19	2	26	50	1.60
35866990--35867102	39	2.9	38	93	2	190	19	2	26	51	1.60
35867084--35867120	13	2.9	13	92	4	58	16	0	43	40	1.48
35867839--35867878	6	6.7	6	82	0	53	47	17	32	2	1.61
35874881--35874983	40	2.5	42	83	7	142	62	0	4	33	1.17
35874854--35874926	29	2.3	33	84	11	100	64	1	4	30	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35874903--35874966	30	2.1	29	83	11	76	62	0	3	34	1.11
35874893--35874955	10	6.4	10	76	18	53	68	0	1	30	0.99
35874882--35874989	41	2.7	40	83	8	139	60	0	4	35	1.18
35878140--35878243	52	2.0	52	90	3	165	22	25	26	25	2.00
35879267--35879338	32	2.2	32	85	4	92	41	11	8	38	1.71
35884177--35884224	21	2.3	21	82	7	62	29	4	20	45	1.70
35885689--35885728	20	2.0	20	95	0	71	32	20	7	40	1.80
35885930--35886005	39	2.0	39	89	2	118	32	22	17	27	1.96
35886161--35886207	24	2.0	24	84	16	62	51	17	0	31	1.46
35887219--35887286	24	2.8	24	84	6	66	39	20	22	17	1.92
35887236--35887286	24	2.1	24	92	0	84	37	17	25	19	1.94
35887835--35887878	21	2.1	21	87	8	63	47	15	0	36	1.46
35887844--35887885	21	2.0	21	85	0	57	42	19	2	35	1.64
35888397--35888442	22	2.0	24	87	8	69	32	21	0	45	1.52
35888537--35888561	7	3.6	7	100	0	50	72	0	0	28	0.86
35889737--35889835	31	3.3	29	83	8	101	25	14	13	47	1.80
35889737--35889810	29	2.5	29	86	8	96	22	13	14	48	1.79
35890378--35890446	29	2.3	29	85	5	84	47	15	14	21	1.81
35895398--35895473	31	2.4	32	80	10	86	43	6	14	35	1.71
35900701--35900741	20	2.0	20	95	0	73	9	17	36	36	1.82
35900885--35901123	116	2.1	116	100	0	478	50	2	25	21	1.61
35902767--35902822	22	2.5	23	77	8	62	23	33	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35909556--35909603	22	2.1	22	84	7	60	54	8	0	37	1.31
35916618--35916715	28	3.5	28	76	6	99	17	15	18	48	1.81
35921980--35922347	184	2.0	184	95	0	664	23	28	19	28	1.98
35925696--35925767	36	2.0	36	89	2	110	30	27	8	33	1.86
35927063--35927203	41	3.5	40	89	5	212	26	23	29	21	1.99
35929735--35929799	20	3.3	19	77	16	69	41	9	4	44	1.57
35932368--35932435	29	2.4	30	74	18	72	55	8	4	30	1.50
35937809--35937846	15	2.5	15	83	8	51	18	5	0	76	0.97
35938604--35938657	26	2.1	25	86	10	74	48	1	1	48	1.23
35940262--35940307	15	3.1	15	84	12	60	69	0	8	21	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145